Wall clock time and date at job start Sun Mar 7 2021 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86297 * 110.00053 * 2 1 4 4 C 1.87375 * 109.94609 * 121.21958 * 2 1 3 5 5 C 1.53719 * 107.28457 * 164.90447 * 4 2 1 6 6 C 1.52521 * 109.64010 * 300.87620 * 5 4 2 7 7 N 1.46495 * 109.04396 * 197.54613 * 6 5 4 8 8 C 1.34782 * 120.00246 * 154.99643 * 7 6 5 9 9 O 1.21283 * 119.99901 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00106 * 180.02562 * 8 7 6 11 11 O 1.42903 * 109.47218 * 180.02562 * 10 8 7 12 12 C 1.35897 * 117.00214 * 179.97438 * 11 10 8 13 13 C 1.38709 * 120.05637 * 359.95484 * 12 11 10 14 14 C 1.38172 * 119.94642 * 179.97438 * 13 12 11 15 15 C 1.38245 * 120.05216 * 0.02562 * 14 13 12 16 16 C 1.38287 * 120.11339 * 0.02562 * 15 14 13 17 17 C 1.38125 * 120.05453 * 359.95334 * 16 15 14 18 18 C 1.50699 * 120.02390 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47124 * 105.00291 * 18 17 16 20 20 Si 1.86302 * 109.47415 * 344.99961 * 18 17 16 21 21 H 1.48499 * 109.47007 * 59.99977 * 20 18 17 22 22 H 1.48500 * 109.46966 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46711 * 300.00285 * 20 18 17 24 24 C 1.52526 * 111.65821 * 76.98983 * 6 5 4 25 25 C 1.53712 * 109.64134 * 283.00917 * 24 6 5 26 26 H 1.08997 * 109.47475 * 298.78229 * 1 2 3 27 27 H 1.09003 * 109.46807 * 58.78454 * 1 2 3 28 28 H 1.09004 * 109.47121 * 178.77315 * 1 2 3 29 29 H 1.08997 * 109.47417 * 181.21622 * 3 2 1 30 30 H 1.09004 * 109.47595 * 301.21937 * 3 2 1 31 31 H 1.09000 * 109.47300 * 61.21811 * 3 2 1 32 32 H 1.08997 * 109.89453 * 45.46420 * 4 2 1 33 33 H 1.08995 * 109.89316 * 284.34927 * 4 2 1 34 34 H 1.08990 * 109.44453 * 180.82629 * 5 4 2 35 35 H 1.09003 * 109.43911 * 60.92550 * 5 4 2 36 36 H 1.08998 * 109.04461 * 316.49991 * 6 5 4 37 37 H 0.96999 * 119.99996 * 335.00350 * 7 6 5 38 38 H 1.08997 * 109.47633 * 60.00409 * 10 8 7 39 39 H 1.09008 * 109.47230 * 300.00084 * 10 8 7 40 40 H 1.08002 * 120.02844 * 0.04164 * 13 12 11 41 41 H 1.08002 * 119.97211 * 180.29545 * 14 13 12 42 42 H 1.07997 * 119.93859 * 179.97438 * 15 14 13 43 43 H 1.07998 * 119.97069 * 179.97438 * 16 15 14 44 44 H 1.09005 * 109.46839 * 225.00112 * 18 17 16 45 45 H 0.96697 * 114.00132 * 59.99807 * 19 18 17 46 46 H 1.09001 * 109.44281 * 43.06096 * 24 6 5 47 47 H 1.08998 * 109.44685 * 162.95727 * 24 6 5 48 48 H 1.08999 * 109.89536 * 299.68292 * 25 24 6 49 49 H 1.08999 * 109.89559 * 178.56896 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5002 1.7506 0.0000 4 6 2.5022 -0.9129 1.5063 5 6 3.9901 -1.2118 1.2619 6 6 4.1432 -2.0546 0.0000 7 7 5.4685 -2.6789 -0.0001 8 6 5.6761 -3.8195 -0.6874 9 8 4.7659 -4.3289 -1.3062 10 6 7.0393 -4.4619 -0.6870 11 8 7.0064 -5.6497 -1.4809 12 6 8.1639 -6.3539 -1.5859 13 6 9.3080 -5.9104 -0.9390 14 6 10.4836 -6.6285 -1.0469 15 6 10.5202 -7.7877 -1.7993 16 6 9.3812 -8.2314 -2.4460 17 6 8.2035 -7.5174 -2.3409 18 6 6.9626 -8.0018 -3.0455 19 8 6.0664 -8.5752 -2.0916 20 14 7.4286 -9.2873 -4.3108 21 1 8.0916 -10.4307 -3.6338 22 1 6.2058 -9.7641 -5.0055 23 1 8.3600 -8.6912 -5.3020 24 6 3.9901 -1.2117 -1.2620 25 6 2.5023 -0.9129 -1.5064 26 1 -0.3634 0.4948 0.9007 27 1 -0.3633 0.5326 -0.8789 28 1 -0.3633 -1.0275 -0.0220 29 1 3.5899 1.7407 -0.0218 30 1 2.1240 2.2743 -0.8789 31 1 2.1595 2.2613 0.9007 32 1 1.9530 -1.8455 1.6355 33 1 2.3899 -0.2894 2.3932 34 1 4.3953 -1.7575 2.1139 35 1 4.5332 -0.2745 1.1403 36 1 3.3826 -2.8354 -0.0007 37 1 6.1965 -2.2714 0.4946 38 1 7.3213 -4.7153 0.3349 39 1 7.7686 -3.7670 -1.1035 40 1 9.2797 -5.0052 -0.3506 41 1 11.3734 -6.2862 -0.5395 42 1 11.4401 -8.3473 -1.8827 43 1 9.4125 -9.1371 -3.0334 44 1 6.4759 -7.1625 -3.5424 45 1 5.7812 -7.9612 -1.4012 46 1 4.5332 -0.2745 -1.1403 47 1 4.3954 -1.7573 -2.1141 48 1 1.9530 -1.8454 -1.6357 49 1 2.3901 -0.2893 -2.3933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:10:29 Heat of formation + Delta-G solvation = -125.601860 kcal Electronic energy + Delta-G solvation = -27180.197970 eV Core-core repulsion = 23423.670120 eV Total energy + Delta-G solvation = -3756.527850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69141 -40.79651 -38.70752 -37.72047 -37.47743 -34.12889 -32.75038 -32.01280 -31.28817 -29.67590 -29.06456 -28.33573 -26.68067 -26.29050 -23.66194 -23.45420 -22.61658 -21.55242 -21.47337 -19.46153 -18.37725 -18.28811 -17.48026 -17.40664 -16.91994 -16.73532 -16.15782 -15.84456 -15.68646 -15.49024 -15.20894 -15.01917 -14.90078 -14.38321 -14.02686 -13.92779 -13.83368 -13.74176 -13.46960 -13.35590 -13.30040 -13.15706 -13.06040 -12.95057 -12.74922 -12.64046 -12.50992 -12.27800 -12.16017 -12.11085 -11.85185 -11.74921 -11.22053 -11.08427 -10.99350 -10.72577 -10.42279 -10.30996 -10.02158 -9.97701 -9.26143 0.20632 0.36333 1.15720 1.42836 1.44934 1.46816 1.48789 1.84792 1.91336 1.97194 2.04330 2.57356 2.67395 2.69378 3.51345 3.60902 3.76684 3.80522 3.92054 3.97126 4.01810 4.09490 4.10958 4.21320 4.26078 4.29674 4.38425 4.48454 4.53843 4.63304 4.66105 4.79251 4.81047 4.83969 4.86595 4.88587 4.91099 4.92829 5.16531 5.23028 5.24273 5.26757 5.35311 5.36378 5.47787 5.49504 5.50685 5.59872 5.69334 5.70989 6.23414 6.47545 6.53310 7.14602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.060 2.940 3 C -0.452 4.452 4 C -0.411 4.411 5 C -0.112 4.112 6 C 0.137 3.863 7 N -0.708 5.708 8 C 0.510 3.490 9 O -0.569 6.569 10 C 0.038 3.962 11 O -0.316 6.316 12 C 0.124 3.876 13 C -0.206 4.206 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.100 4.100 17 C -0.163 4.163 18 C -0.094 4.094 19 O -0.552 6.552 20 Si 1.041 2.959 21 H -0.253 1.253 22 H -0.278 1.278 23 H -0.237 1.237 24 C -0.116 4.116 25 C -0.424 4.424 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.420 0.580 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.136 0.864 44 H 0.067 0.933 45 H 0.372 0.628 46 H 0.087 0.913 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 6.837 5.063 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.252 2.748 3 C -0.560 4.560 4 C -0.497 4.497 5 C -0.150 4.150 6 C 0.033 3.967 7 N -0.362 5.362 8 C 0.296 3.704 9 O -0.447 6.447 10 C -0.040 4.040 11 O -0.229 6.229 12 C 0.079 3.921 13 C -0.224 4.224 14 C -0.095 4.095 15 C -0.172 4.172 16 C -0.117 4.117 17 C -0.164 4.164 18 C -0.201 4.201 19 O -0.359 6.359 20 Si 0.861 3.139 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.160 1.160 24 C -0.154 4.154 25 C -0.508 4.508 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.153 0.847 44 H 0.085 0.915 45 H 0.221 0.779 46 H 0.105 0.895 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.949 5.301 3.556 8.077 hybrid contribution -0.230 0.898 0.712 1.168 sum 4.719 6.199 4.268 8.883 Atomic orbital electron populations 1.26324 1.22479 1.04121 1.04474 0.78631 0.64974 0.66214 0.65007 1.26157 1.06840 1.18431 1.04593 1.26282 0.99466 1.08491 1.15430 1.21466 0.97760 1.00469 0.95264 1.21085 0.84008 0.95487 0.96127 1.45863 1.14208 1.24496 1.51628 1.20537 0.89843 0.81175 0.78827 1.90769 1.45986 1.64114 1.43866 1.22730 0.95631 0.86964 0.98661 1.86075 1.31614 1.37222 1.67966 1.18954 0.85590 0.91384 0.96161 1.21613 0.92465 1.03831 1.04478 1.21408 0.98105 0.93686 0.96253 1.21405 0.98772 0.98071 0.98912 1.21175 0.92186 0.99057 0.99330 1.19743 0.97175 0.95966 1.03546 1.25397 0.89327 1.07139 0.98214 1.86613 1.64937 1.41868 1.42465 0.84142 0.78921 0.76073 0.74733 1.17721 1.20315 1.16006 1.21562 0.97203 1.00153 0.96514 1.26558 0.99791 1.08021 1.16429 0.90833 0.91545 0.91847 0.90488 0.91538 0.90729 0.91021 0.88759 0.90372 0.88859 0.91768 0.74203 0.85784 0.85994 0.82261 0.82614 0.83372 0.84681 0.91502 0.77937 0.89487 0.94457 0.92219 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.10 8.65 113.37 0.98 2.08 16 2 Si 1.06 -6.42 11.59 68.60 0.80 -5.63 16 3 C -0.45 2.67 8.65 113.37 0.98 3.66 16 4 C -0.41 2.48 4.98 72.22 0.36 2.84 16 5 C -0.11 0.77 5.05 30.68 0.15 0.93 16 6 C 0.14 -0.20 2.03 44.68 0.09 -0.11 16 7 N -0.71 2.75 5.05 -444.05 -2.24 0.51 16 8 C 0.51 1.49 7.66 87.65 0.67 2.16 16 9 O -0.57 -8.22 16.17 16.00 0.26 -7.96 16 10 C 0.04 -0.12 5.22 71.23 0.37 0.25 16 11 O -0.32 -1.69 8.58 -73.35 -0.63 -2.32 16 12 C 0.12 0.51 6.62 22.51 0.15 0.66 16 13 C -0.21 0.35 9.04 22.37 0.20 0.55 16 14 C -0.08 0.19 10.04 22.26 0.22 0.42 16 15 C -0.15 0.03 10.04 22.28 0.22 0.25 16 16 C -0.10 -0.37 8.66 22.25 0.19 -0.18 16 17 C -0.16 -1.05 5.28 -19.77 -0.10 -1.16 16 18 C -0.09 -0.77 2.33 71.24 0.17 -0.60 16 19 O -0.55 -6.05 12.65 -148.98 -1.89 -7.93 16 20 Si 1.04 5.61 25.75 68.60 1.77 7.38 16 21 H -0.25 -1.30 6.73 99.48 0.67 -0.63 16 22 H -0.28 -2.37 7.11 99.48 0.71 -1.66 16 23 H -0.24 -0.73 7.11 99.48 0.71 -0.02 16 24 C -0.12 0.02 5.18 30.68 0.16 0.18 16 25 C -0.42 0.18 4.98 72.22 0.36 0.54 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 28 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 30 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 31 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.07 -0.28 7.99 -2.39 -0.02 -0.30 16 33 H 0.09 -0.75 7.99 -2.39 -0.02 -0.77 16 34 H 0.08 -0.60 8.13 -2.39 -0.02 -0.62 16 35 H 0.09 -1.01 7.69 -2.39 -0.02 -1.02 16 36 H 0.06 0.29 7.34 -2.39 -0.02 0.27 16 37 H 0.42 -5.01 8.58 -92.71 -0.80 -5.81 16 38 H 0.12 -1.16 7.66 -2.39 -0.02 -1.18 16 39 H 0.12 -1.10 7.66 -2.38 -0.02 -1.12 16 40 H 0.16 -1.38 6.30 -2.91 -0.02 -1.40 16 41 H 0.16 -1.28 8.06 -2.91 -0.02 -1.31 16 42 H 0.15 -0.70 8.06 -2.91 -0.02 -0.73 16 43 H 0.14 0.23 4.89 -2.91 -0.01 0.22 16 44 H 0.07 0.61 7.83 -2.38 -0.02 0.59 16 45 H 0.37 3.16 8.61 -74.06 -0.64 2.52 16 46 H 0.09 -0.42 7.69 -2.39 -0.02 -0.44 16 47 H 0.04 0.22 7.92 -2.39 -0.02 0.20 16 48 H 0.06 0.19 7.99 -2.39 -0.02 0.17 16 49 H 0.08 -0.04 7.99 -2.39 -0.02 -0.06 16 Total: 0.00 -21.91 391.31 3.48 -18.43 By element: Atomic # 1 Polarization: -15.18 SS G_CDS: 0.23 Total: -14.95 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.18 Total: 12.48 kcal Atomic # 7 Polarization: 2.75 SS G_CDS: -2.24 Total: 0.51 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -2.26 Total: -18.22 kcal Atomic # 14 Polarization: -0.81 SS G_CDS: 2.56 Total: 1.75 kcal Total: -21.91 3.48 -18.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.169 kcal (2) G-P(sol) polarization free energy of solvation -21.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds