Wall clock time and date at job start Sun Mar 7 2021 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86296 * 109.99970 * 2 1 4 4 C 1.87383 * 109.94654 * 121.21774 * 2 1 3 5 5 C 1.53717 * 107.28076 * 164.90256 * 4 2 1 6 6 C 1.52519 * 109.64497 * 300.88002 * 5 4 2 7 7 N 1.46500 * 109.04373 * 197.54995 * 6 5 4 8 8 C 1.34779 * 120.00169 * 154.99418 * 7 6 5 9 9 O 1.21282 * 119.99922 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00037 * 180.02562 * 8 7 6 11 11 O 1.42905 * 109.46972 * 180.02562 * 10 8 7 12 12 C 1.35896 * 117.00039 * 180.02562 * 11 10 8 13 13 C 1.38738 * 120.05353 * 359.72616 * 12 11 10 14 14 C 1.38148 * 119.94048 * 179.74738 * 13 12 11 15 15 C 1.38261 * 120.05800 * 0.50500 * 14 13 12 16 16 C 1.50703 * 119.94589 * 179.75166 * 15 14 13 17 17 O 1.42902 * 109.46840 * 245.01936 * 16 15 14 18 18 Si 1.86294 * 109.47009 * 5.01633 * 16 15 14 19 19 H 1.48499 * 109.47378 * 60.00493 * 18 16 15 20 20 H 1.48497 * 109.47077 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47291 * 300.00372 * 18 16 15 22 22 C 1.38262 * 120.11048 * 359.76434 * 15 14 13 23 23 C 1.38145 * 120.05942 * 359.97438 * 22 15 14 24 24 C 1.52523 * 111.66129 * 76.98891 * 6 5 4 25 25 C 1.53720 * 109.63962 * 283.01248 * 24 6 5 26 26 H 1.08998 * 109.47119 * 298.77389 * 1 2 3 27 27 H 1.09000 * 109.47202 * 58.78333 * 1 2 3 28 28 H 1.09005 * 109.47009 * 178.78225 * 1 2 3 29 29 H 1.09000 * 109.47571 * 181.21788 * 3 2 1 30 30 H 1.09003 * 109.47363 * 301.22300 * 3 2 1 31 31 H 1.08999 * 109.47224 * 61.21832 * 3 2 1 32 32 H 1.09004 * 109.89222 * 45.46474 * 4 2 1 33 33 H 1.08991 * 109.89586 * 284.34782 * 4 2 1 34 34 H 1.08998 * 109.44313 * 180.81895 * 5 4 2 35 35 H 1.09003 * 109.44326 * 60.92757 * 5 4 2 36 36 H 1.09009 * 109.04219 * 316.49785 * 6 5 4 37 37 H 0.96996 * 119.99986 * 335.00015 * 7 6 5 38 38 H 1.09000 * 109.47247 * 60.00371 * 10 8 7 39 39 H 1.09001 * 109.47358 * 299.99798 * 10 8 7 40 40 H 1.07995 * 120.02746 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.97067 * 180.22662 * 14 13 12 42 42 H 1.08995 * 109.47668 * 125.02330 * 16 15 14 43 43 H 0.96699 * 113.99859 * 59.99468 * 17 16 15 44 44 H 1.08009 * 119.97583 * 179.97438 * 22 15 14 45 45 H 1.08000 * 120.03441 * 179.97438 * 23 22 15 46 46 H 1.08999 * 109.43834 * 43.05661 * 24 6 5 47 47 H 1.08998 * 109.44457 * 162.96027 * 24 6 5 48 48 H 1.08998 * 109.89468 * 299.67850 * 25 24 6 49 49 H 1.08999 * 109.89168 * 178.56779 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5002 1.7506 0.0000 4 6 2.5023 -0.9129 1.5064 5 6 3.9901 -1.2118 1.2619 6 6 4.1432 -2.0546 -0.0001 7 7 5.4686 -2.6788 -0.0001 8 6 5.6762 -3.8195 -0.6874 9 8 4.7660 -4.3288 -1.3062 10 6 7.0394 -4.4619 -0.6869 11 8 7.0065 -5.6497 -1.4809 12 6 8.1637 -6.3545 -1.5850 13 6 9.3089 -5.9089 -0.9410 14 6 10.4828 -6.6300 -1.0441 15 6 10.5196 -7.7892 -1.7968 16 6 11.8029 -8.5708 -1.9122 17 8 12.2543 -8.5478 -3.2678 18 14 13.0976 -7.8046 -0.8135 19 1 12.6285 -7.8285 0.5953 20 1 14.3623 -8.5744 -0.9276 21 1 13.3342 -6.3997 -1.2326 22 6 9.3810 -8.2323 -2.4442 23 6 8.2033 -7.5178 -2.3398 24 6 3.9902 -1.2117 -1.2620 25 6 2.5022 -0.9129 -1.5064 26 1 -0.3633 0.4947 0.9008 27 1 -0.3633 0.5326 -0.8789 28 1 -0.3633 -1.0275 -0.0218 29 1 3.5899 1.7407 -0.0218 30 1 2.1239 2.2743 -0.8788 31 1 2.1595 2.2613 0.9007 32 1 1.9530 -1.8456 1.6356 33 1 2.3901 -0.2894 2.3933 34 1 4.3954 -1.7573 2.1140 35 1 4.5333 -0.2746 1.1402 36 1 3.3826 -2.8354 -0.0007 37 1 6.1966 -2.2713 0.4946 38 1 7.3213 -4.7153 0.3350 39 1 7.7687 -3.7671 -1.1034 40 1 9.2818 -5.0012 -0.3566 41 1 11.3737 -6.2856 -0.5400 42 1 11.6292 -9.6019 -1.6046 43 1 12.4292 -7.6601 -3.6091 44 1 9.4123 -9.1379 -3.0320 45 1 7.3143 -7.8641 -2.8460 46 1 4.5332 -0.2745 -1.1403 47 1 4.3954 -1.7573 -2.1141 48 1 1.9530 -1.8454 -1.6357 49 1 2.3900 -0.2893 -2.3933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:10:41 Heat of formation + Delta-G solvation = -123.885122 kcal Electronic energy + Delta-G solvation = -26411.050007 eV Core-core repulsion = 22654.596600 eV Total energy + Delta-G solvation = -3756.453407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61421 -40.77308 -39.14164 -37.84641 -37.08451 -34.14319 -32.39405 -32.01240 -31.75034 -29.84776 -29.08748 -28.33236 -26.56168 -25.95454 -24.02261 -23.49540 -22.42404 -21.56837 -21.49122 -19.54625 -18.50262 -18.10297 -17.46747 -17.25677 -16.98554 -16.46072 -16.15060 -15.93811 -15.65015 -15.59378 -15.14664 -14.98150 -14.92114 -14.45482 -14.04039 -13.92574 -13.80187 -13.73671 -13.59044 -13.46755 -13.35484 -13.29930 -13.15338 -13.05810 -12.94487 -12.51154 -12.26373 -12.18046 -12.14707 -12.08726 -12.03801 -11.75222 -11.56048 -11.04531 -10.72344 -10.42193 -10.36769 -10.31771 -10.06392 -10.02494 -9.25422 0.24881 0.28397 1.21041 1.43020 1.47557 1.47765 1.54593 1.84993 1.94415 1.97674 2.04746 2.58619 2.63412 2.69571 3.50025 3.58570 3.70401 3.77370 3.82180 3.92898 3.99166 4.01192 4.10019 4.21047 4.26836 4.38387 4.41069 4.53809 4.57172 4.65412 4.71011 4.79490 4.81458 4.84132 4.86332 4.88902 4.91382 4.94441 5.13770 5.16461 5.22385 5.24093 5.26740 5.35756 5.47809 5.47945 5.50686 5.60177 5.68346 5.70784 6.24508 6.47328 6.73551 7.13570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.062 2.938 3 C -0.452 4.452 4 C -0.411 4.411 5 C -0.112 4.112 6 C 0.136 3.864 7 N -0.707 5.707 8 C 0.510 3.490 9 O -0.572 6.572 10 C 0.036 3.964 11 O -0.320 6.320 12 C 0.119 3.881 13 C -0.202 4.202 14 C -0.089 4.089 15 C -0.160 4.160 16 C -0.078 4.078 17 O -0.555 6.555 18 Si 0.984 3.016 19 H -0.255 1.255 20 H -0.279 1.279 21 H -0.247 1.247 22 C -0.055 4.055 23 C -0.166 4.166 24 C -0.116 4.116 25 C -0.425 4.425 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.161 0.839 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.388 0.612 44 H 0.140 0.860 45 H 0.128 0.872 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.059 0.941 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 6.354 5.377 9.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.253 2.747 3 C -0.560 4.560 4 C -0.497 4.497 5 C -0.149 4.149 6 C 0.032 3.968 7 N -0.361 5.361 8 C 0.296 3.704 9 O -0.451 6.451 10 C -0.041 4.041 11 O -0.233 6.233 12 C 0.074 3.926 13 C -0.220 4.220 14 C -0.107 4.107 15 C -0.161 4.161 16 C -0.188 4.188 17 O -0.362 6.362 18 Si 0.808 3.192 19 H -0.179 1.179 20 H -0.205 1.205 21 H -0.171 1.171 22 C -0.073 4.073 23 C -0.184 4.184 24 C -0.155 4.155 25 C -0.508 4.508 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.259 0.741 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.179 0.821 41 H 0.159 0.841 42 H 0.139 0.861 43 H 0.237 0.763 44 H 0.158 0.842 45 H 0.146 0.854 46 H 0.106 0.894 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.244 5.675 5.435 8.502 hybrid contribution -0.288 0.187 -0.484 0.594 sum 2.956 5.863 4.951 8.223 Atomic orbital electron populations 1.26321 1.22451 1.04117 1.04481 0.78604 0.64967 0.66164 0.64917 1.26158 1.06837 1.18438 1.04597 1.26288 0.99429 1.08495 1.15482 1.21465 0.97806 1.00464 0.95201 1.21104 0.83974 0.95498 0.96227 1.45862 1.14260 1.24425 1.51573 1.20571 0.89875 0.81182 0.78795 1.90762 1.46092 1.64200 1.44033 1.22754 0.95620 0.87019 0.98746 1.86133 1.31967 1.37300 1.67919 1.19232 0.85085 0.92143 0.96113 1.21456 0.92097 1.03628 1.04824 1.21091 0.98256 0.93940 0.97365 1.20380 0.96864 0.97540 1.01314 1.25023 0.97607 1.05618 0.90600 1.86489 1.88022 1.34910 1.26822 0.85205 0.76619 0.79313 0.78033 1.17886 1.20472 1.17055 1.20955 0.90530 0.99057 0.96785 1.20668 0.99927 0.95190 1.02649 1.21567 0.97263 1.00164 0.96471 1.26569 0.99749 1.08030 1.16501 0.90824 0.91533 0.91856 0.90497 0.91532 0.90723 0.91044 0.88726 0.90380 0.88807 0.91834 0.74124 0.85711 0.85759 0.82140 0.84130 0.86148 0.76271 0.84180 0.85423 0.89404 0.94484 0.92243 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.15 8.65 113.37 0.98 2.13 16 2 Si 1.06 -6.46 11.59 68.60 0.80 -5.66 16 3 C -0.45 2.69 8.65 113.37 0.98 3.67 16 4 C -0.41 2.46 4.98 72.22 0.36 2.82 16 5 C -0.11 0.75 5.05 30.68 0.15 0.91 16 6 C 0.14 -0.15 2.03 44.67 0.09 -0.06 16 7 N -0.71 2.32 5.05 -444.03 -2.24 0.08 16 8 C 0.51 2.05 7.66 87.66 0.67 2.72 16 9 O -0.57 -9.16 16.17 16.00 0.26 -8.90 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.30 16 11 O -0.32 -2.27 9.67 -73.35 -0.71 -2.98 16 12 C 0.12 0.53 6.69 22.51 0.15 0.68 16 13 C -0.20 0.23 9.04 22.37 0.20 0.43 16 14 C -0.09 0.10 8.66 22.25 0.19 0.30 16 15 C -0.16 -0.09 5.35 -19.85 -0.11 -0.20 16 16 C -0.08 0.11 2.80 71.24 0.20 0.30 16 17 O -0.56 -0.27 12.83 -148.98 -1.91 -2.18 16 18 Si 0.98 -2.55 25.13 68.60 1.72 -0.82 16 19 H -0.25 0.50 7.11 99.48 0.71 1.20 16 20 H -0.28 -0.44 7.11 99.48 0.71 0.26 16 21 H -0.25 0.89 7.04 99.48 0.70 1.59 16 22 C -0.06 -0.15 9.68 22.25 0.22 0.06 16 23 C -0.17 -0.88 9.99 22.37 0.22 -0.66 16 24 C -0.12 -0.01 5.18 30.68 0.16 0.15 16 25 C -0.43 0.13 4.98 72.22 0.36 0.49 16 26 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 27 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 28 H 0.06 -0.06 7.96 -2.38 -0.02 -0.08 16 29 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 32 H 0.07 -0.28 7.99 -2.39 -0.02 -0.30 16 33 H 0.09 -0.76 7.99 -2.39 -0.02 -0.78 16 34 H 0.08 -0.59 8.13 -2.39 -0.02 -0.61 16 35 H 0.09 -1.00 7.69 -2.39 -0.02 -1.02 16 36 H 0.06 0.31 7.34 -2.38 -0.02 0.30 16 37 H 0.42 -4.87 8.58 -92.71 -0.80 -5.67 16 38 H 0.13 -1.07 7.67 -2.39 -0.02 -1.09 16 39 H 0.12 -1.06 7.65 -2.39 -0.02 -1.08 16 40 H 0.16 -1.31 6.30 -2.91 -0.02 -1.33 16 41 H 0.14 -0.72 4.86 -2.91 -0.01 -0.73 16 42 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 43 H 0.39 -2.31 8.70 -74.06 -0.64 -2.96 16 44 H 0.14 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 46 H 0.09 -0.42 7.69 -2.39 -0.02 -0.43 16 47 H 0.04 0.23 7.92 -2.39 -0.02 0.21 16 48 H 0.06 0.20 7.99 -2.39 -0.02 0.18 16 49 H 0.08 -0.04 7.99 -2.39 -0.02 -0.06 16 Total: 0.00 -23.49 392.66 3.38 -20.11 By element: Atomic # 1 Polarization: -13.95 SS G_CDS: 0.26 Total: -13.69 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 5.21 Total: 14.04 kcal Atomic # 7 Polarization: 2.32 SS G_CDS: -2.24 Total: 0.08 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -2.36 Total: -14.06 kcal Atomic # 14 Polarization: -9.01 SS G_CDS: 2.52 Total: -6.49 kcal Total: -23.49 3.38 -20.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.771 kcal (2) G-P(sol) polarization free energy of solvation -23.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds