Wall clock time and date at job start Sun Mar 7 2021 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 110.00399 * 2 1 4 4 C 1.87378 * 109.94724 * 121.22120 * 2 1 3 5 5 C 1.53717 * 107.28614 * 164.90376 * 4 2 1 6 6 C 1.52530 * 109.63925 * 300.87550 * 5 4 2 7 7 N 1.46499 * 109.04247 * 197.54761 * 6 5 4 8 8 C 1.34777 * 119.99865 * 155.00203 * 7 6 5 9 9 O 1.21276 * 119.99716 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99807 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.47032 * 179.97438 * 10 8 7 12 12 O 1.42895 * 109.47495 * 179.97438 * 11 10 8 13 13 C 1.35896 * 117.00545 * 179.97438 * 12 11 10 14 14 C 1.38713 * 120.05453 * 359.72824 * 13 12 11 15 15 C 1.38164 * 119.94630 * 179.72411 * 14 13 12 16 16 C 1.38246 * 120.05212 * 0.57180 * 15 14 13 17 17 C 1.38291 * 120.11234 * 359.67874 * 16 15 14 18 18 C 1.50699 * 119.97213 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47109 * 245.01925 * 18 17 16 20 20 Si 1.86297 * 109.47174 * 5.02027 * 18 17 16 21 21 H 1.48500 * 109.47091 * 300.00260 * 20 18 17 22 22 H 1.48497 * 109.47150 * 60.00210 * 20 18 17 23 23 H 1.48501 * 109.47167 * 180.02562 * 20 18 17 24 24 C 1.38116 * 120.05539 * 0.04520 * 17 16 15 25 25 C 1.52527 * 111.65466 * 76.98704 * 6 5 4 26 26 C 1.53710 * 109.64203 * 283.00799 * 25 6 5 27 27 H 1.09004 * 109.46836 * 298.77900 * 1 2 3 28 28 H 1.08994 * 109.46834 * 58.77950 * 1 2 3 29 29 H 1.08997 * 109.46829 * 178.77878 * 1 2 3 30 30 H 1.08994 * 109.47077 * 181.21701 * 3 2 1 31 31 H 1.08998 * 109.47050 * 301.22393 * 3 2 1 32 32 H 1.09005 * 109.46593 * 61.22028 * 3 2 1 33 33 H 1.09001 * 109.89466 * 45.46045 * 4 2 1 34 34 H 1.08997 * 109.89592 * 284.34451 * 4 2 1 35 35 H 1.09002 * 109.44430 * 60.92050 * 5 4 2 36 36 H 1.09002 * 109.44501 * 180.82233 * 5 4 2 37 37 H 1.08996 * 109.04432 * 316.42964 * 6 5 4 38 38 H 0.97000 * 120.00106 * 335.00242 * 7 6 5 39 39 H 1.09000 * 109.46528 * 299.99153 * 10 8 7 40 40 H 1.08990 * 109.47443 * 59.99442 * 10 8 7 41 41 H 1.09007 * 109.47128 * 299.99701 * 11 10 8 42 42 H 1.09004 * 109.47351 * 59.99638 * 11 10 8 43 43 H 1.08006 * 120.02544 * 359.97438 * 14 13 12 44 44 H 1.07992 * 119.97485 * 180.27085 * 15 14 13 45 45 H 1.08004 * 119.94529 * 179.70470 * 16 15 14 46 46 H 1.09001 * 109.47177 * 125.02192 * 18 17 16 47 47 H 0.96700 * 114.00036 * 179.97438 * 19 18 17 48 48 H 1.08004 * 120.03223 * 180.02562 * 24 17 16 49 49 H 1.09003 * 109.43856 * 162.95659 * 25 6 5 50 50 H 1.09003 * 109.41374 * 43.04810 * 25 6 5 51 51 H 1.08994 * 109.89679 * 299.68606 * 26 25 6 52 52 H 1.09000 * 109.89380 * 178.56965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5023 -0.9130 1.5063 5 6 3.9901 -1.2119 1.2619 6 6 4.1432 -2.0547 -0.0001 7 7 5.4685 -2.6790 -0.0002 8 6 5.6761 -3.8196 -0.6876 9 8 4.7656 -4.3293 -1.3056 10 6 7.0393 -4.4621 -0.6871 11 6 7.0037 -5.7343 -1.5362 12 8 8.2964 -6.3433 -1.5363 13 6 8.4373 -7.4921 -2.2486 14 6 7.3523 -8.0253 -2.9287 15 6 7.4994 -9.1902 -3.6569 16 6 8.7239 -9.8307 -3.6983 17 6 9.8058 -9.3040 -3.0169 18 6 11.1392 -10.0045 -3.0647 19 8 11.4784 -10.4729 -1.7579 20 14 11.0398 -11.4498 -4.2360 21 1 9.9989 -12.3983 -3.7646 22 1 10.6874 -10.9631 -5.5940 23 1 12.3536 -12.1405 -4.2826 24 6 9.6653 -8.1366 -2.2922 25 6 3.9901 -1.2117 -1.2620 26 6 2.5022 -0.9129 -1.5064 27 1 -0.3633 0.4948 0.9008 28 1 -0.3633 0.5326 -0.8788 29 1 -0.3633 -1.0274 -0.0219 30 1 3.5900 1.7406 -0.0218 31 1 2.1240 2.2743 -0.8788 32 1 2.1596 2.2612 0.9008 33 1 1.9530 -1.8456 1.6355 34 1 2.3901 -0.2895 2.3932 35 1 4.5333 -0.2747 1.1402 36 1 4.3954 -1.7575 2.1140 37 1 3.3834 -2.8362 -0.0002 38 1 6.1966 -2.2715 0.4945 39 1 7.7685 -3.7672 -1.1036 40 1 7.3213 -4.7154 0.3347 41 1 6.2745 -6.4291 -1.1193 42 1 6.7216 -5.4814 -2.5582 43 1 6.3942 -7.5280 -2.8924 44 1 6.6561 -9.6034 -4.1901 45 1 8.8357 -10.7438 -4.2642 46 1 11.9032 -9.3083 -3.4108 47 1 12.3265 -10.9353 -1.7137 48 1 10.5106 -7.7254 -1.7605 49 1 4.3953 -1.7574 -2.1142 50 1 4.5331 -0.2746 -1.1397 51 1 1.9530 -1.8454 -1.6356 52 1 2.3900 -0.2893 -2.3933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:11:10 Heat of formation + Delta-G solvation = -135.761521 kcal Electronic energy + Delta-G solvation = -28055.509143 eV Core-core repulsion = 24143.003118 eV Total energy + Delta-G solvation = -3912.506025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.32735 -40.84210 -39.01793 -37.93565 -37.26445 -34.13770 -33.01748 -32.49239 -32.12487 -30.73822 -29.32946 -28.50614 -27.26699 -26.67192 -24.81948 -23.58255 -23.56775 -21.91033 -21.54296 -21.18540 -19.06985 -18.46995 -17.83923 -17.50399 -17.40045 -17.22884 -16.80888 -16.22762 -15.89929 -15.78007 -15.59835 -15.18306 -14.85962 -14.69608 -14.41916 -14.29650 -14.17952 -14.06126 -13.92265 -13.80764 -13.47449 -13.40907 -13.37852 -13.30783 -13.17577 -13.05773 -12.90965 -12.85508 -12.58033 -12.32503 -12.22478 -12.05024 -11.84640 -11.83842 -11.74087 -11.57470 -10.98496 -10.86307 -10.54221 -10.36944 -10.33741 -10.03492 -9.79177 -9.12877 0.32129 0.52135 1.14507 1.45638 1.52227 1.58622 1.67528 1.72832 1.80578 1.85027 1.92767 2.50496 2.56653 2.74605 3.43585 3.55533 3.67663 3.82450 3.86233 3.93218 3.96139 4.02990 4.13355 4.13900 4.27658 4.29226 4.32679 4.36154 4.42658 4.51790 4.57023 4.63980 4.66946 4.67226 4.69620 4.70951 4.71730 4.73155 4.78628 4.82530 5.02583 5.08071 5.14210 5.22348 5.27523 5.36413 5.37249 5.43191 5.48383 5.50061 5.54392 5.56463 5.77933 6.40627 6.47860 6.58777 7.16184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 0.990 3.010 3 C -0.445 4.445 4 C -0.403 4.403 5 C -0.116 4.116 6 C 0.135 3.865 7 N -0.726 5.726 8 C 0.520 3.480 9 O -0.537 6.537 10 C -0.142 4.142 11 C 0.075 3.925 12 O -0.316 6.316 13 C 0.132 3.868 14 C -0.203 4.203 15 C -0.072 4.072 16 C -0.161 4.161 17 C -0.038 4.038 18 C -0.083 4.083 19 O -0.543 6.543 20 Si 0.950 3.050 21 H -0.247 1.247 22 H -0.249 1.249 23 H -0.257 1.257 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.404 4.404 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.402 0.598 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.122 0.878 46 H 0.078 0.922 47 H 0.380 0.620 48 H 0.134 0.866 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 3.084 1.170 3.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.187 2.813 3 C -0.553 4.553 4 C -0.489 4.489 5 C -0.154 4.154 6 C 0.031 3.969 7 N -0.378 5.378 8 C 0.306 3.694 9 O -0.414 6.414 10 C -0.182 4.182 11 C -0.001 4.001 12 O -0.230 6.230 13 C 0.087 3.913 14 C -0.221 4.221 15 C -0.090 4.090 16 C -0.179 4.179 17 C -0.039 4.039 18 C -0.193 4.193 19 O -0.349 6.349 20 Si 0.773 3.227 21 H -0.171 1.171 22 H -0.173 1.173 23 H -0.182 1.182 24 C -0.140 4.140 25 C -0.155 4.155 26 C -0.490 4.490 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.236 0.764 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.096 0.904 47 H 0.228 0.772 48 H 0.152 0.848 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.097 0.903 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.492 2.395 0.415 2.480 hybrid contribution 0.716 0.343 0.346 0.866 sum 1.208 2.739 0.762 3.089 Atomic orbital electron populations 1.26070 1.20459 1.04561 1.04455 0.79669 0.67117 0.67337 0.67197 1.26087 1.06265 1.18473 1.04482 1.26209 0.99410 1.08537 1.14755 1.21460 0.97476 0.99897 0.96543 1.21086 0.84732 0.95991 0.95051 1.46118 1.13564 1.25705 1.52391 1.20287 0.89879 0.80550 0.78696 1.90748 1.44826 1.63099 1.42686 1.21480 0.95851 0.97374 1.03509 1.22413 0.83147 0.93649 1.00891 1.85966 1.33354 1.36253 1.67434 1.18926 0.94194 0.86132 0.92048 1.21379 0.98816 0.99427 1.02500 1.20875 0.97084 0.94108 0.96964 1.20913 0.93191 1.00935 1.02881 1.19008 0.93711 0.94224 0.96916 1.24769 0.96193 1.05502 0.92851 1.86521 1.43122 1.77737 1.27532 0.85687 0.81108 0.77742 0.78170 1.17096 1.17270 1.18155 1.20201 0.95973 0.95806 1.02032 1.21558 0.96807 0.99626 0.97485 1.26240 0.99923 1.08369 1.14451 0.91217 0.91188 0.91136 0.91261 0.91195 0.91216 0.90276 0.90091 0.91094 0.91114 0.89144 0.76385 0.87505 0.87495 0.90930 0.90945 0.84934 0.85174 0.86052 0.90392 0.77221 0.84792 0.91455 0.91676 0.90328 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.66 8.65 101.05 0.87 1.53 16 2 Si 0.99 -2.79 11.59 -169.99 -1.97 -4.77 16 3 C -0.45 0.91 8.65 101.05 0.87 1.78 16 4 C -0.40 0.93 4.98 37.53 0.19 1.12 16 5 C -0.12 0.27 5.05 -26.60 -0.13 0.13 16 6 C 0.14 -0.09 2.03 -68.41 -0.14 -0.23 16 7 N -0.73 0.97 5.05 -54.28 -0.27 0.69 16 8 C 0.52 0.44 7.58 -10.98 -0.08 0.36 16 9 O -0.54 -2.57 15.65 5.56 0.09 -2.48 16 10 C -0.14 0.16 6.07 -27.88 -0.17 -0.01 16 11 C 0.07 0.08 4.03 37.16 0.15 0.23 16 12 O -0.32 -0.84 10.14 -19.41 -0.20 -1.04 16 13 C 0.13 0.43 6.69 -39.21 -0.26 0.17 16 14 C -0.20 -0.50 9.04 -39.43 -0.36 -0.86 16 15 C -0.07 -0.14 10.04 -39.61 -0.40 -0.54 16 16 C -0.16 -0.37 8.67 -39.56 -0.34 -0.71 16 17 C -0.04 -0.10 5.38 -104.65 -0.56 -0.66 16 18 C -0.08 -0.03 2.79 36.00 0.10 0.07 16 19 O -0.54 -0.47 12.81 -35.23 -0.45 -0.92 16 20 Si 0.95 -0.11 25.14 -169.99 -4.27 -4.38 16 21 H -0.25 -0.32 7.04 56.52 0.40 0.08 16 22 H -0.25 -0.12 7.11 56.52 0.40 0.29 16 23 H -0.26 0.05 7.11 56.52 0.40 0.45 16 24 C -0.12 -0.38 9.62 -39.43 -0.38 -0.76 16 25 C -0.12 0.05 5.18 -26.60 -0.14 -0.09 16 26 C -0.40 0.39 4.98 37.53 0.19 0.57 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.08 -0.15 7.99 -51.93 -0.41 -0.56 16 34 H 0.08 -0.22 7.99 -51.93 -0.41 -0.63 16 35 H 0.07 -0.24 7.69 -51.93 -0.40 -0.64 16 36 H 0.07 -0.16 8.13 -51.93 -0.42 -0.59 16 37 H 0.09 0.11 7.34 -51.93 -0.38 -0.27 16 38 H 0.40 -1.65 8.58 -40.82 -0.35 -2.00 16 39 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 40 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 41 H 0.07 0.11 7.61 -51.92 -0.39 -0.29 16 42 H 0.07 0.10 7.63 -51.93 -0.40 -0.30 16 43 H 0.13 0.18 6.30 -52.48 -0.33 -0.15 16 44 H 0.13 -0.04 8.06 -52.49 -0.42 -0.46 16 45 H 0.12 0.10 4.86 -52.48 -0.25 -0.15 16 46 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 47 H 0.38 -1.42 8.74 45.56 0.40 -1.02 16 48 H 0.13 0.32 8.06 -52.48 -0.42 -0.10 16 49 H 0.07 0.11 7.92 -51.93 -0.41 -0.30 16 50 H 0.06 -0.11 7.69 -51.93 -0.40 -0.51 16 51 H 0.08 0.00 7.99 -51.93 -0.41 -0.42 16 52 H 0.08 -0.08 7.99 -51.93 -0.41 -0.50 16 LS Contribution 413.66 15.07 6.23 6.23 Total: 0.00 -7.89 413.66 -9.83 -17.72 By element: Atomic # 1 Polarization: -4.79 SS G_CDS: -8.39 Total: -13.17 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.59 Total: 2.12 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.27 Total: 0.69 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.56 Total: -4.44 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: -6.24 Total: -9.14 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -7.89 -9.83 -17.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.045 kcal (2) G-P(sol) polarization free energy of solvation -7.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds