Wall clock time and date at job start Sun Mar 7 2021 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 110.00399 * 2 1 4 4 C 1.87378 * 109.94724 * 121.22120 * 2 1 3 5 5 C 1.53717 * 107.28614 * 164.90376 * 4 2 1 6 6 C 1.52530 * 109.63925 * 300.87550 * 5 4 2 7 7 N 1.46499 * 109.04247 * 197.54761 * 6 5 4 8 8 C 1.34777 * 119.99865 * 155.00203 * 7 6 5 9 9 O 1.21276 * 119.99716 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99807 * 180.02562 * 8 7 6 11 11 C 1.52998 * 109.47032 * 179.97438 * 10 8 7 12 12 O 1.42895 * 109.47495 * 179.97438 * 11 10 8 13 13 C 1.35896 * 117.00545 * 179.97438 * 12 11 10 14 14 C 1.38713 * 120.05453 * 359.72824 * 13 12 11 15 15 C 1.38164 * 119.94630 * 179.72411 * 14 13 12 16 16 C 1.38246 * 120.05212 * 0.57180 * 15 14 13 17 17 C 1.38291 * 120.11234 * 359.67874 * 16 15 14 18 18 C 1.50699 * 119.97213 * 180.02562 * 17 16 15 19 19 O 1.42901 * 109.47109 * 245.01925 * 18 17 16 20 20 Si 1.86297 * 109.47174 * 5.02027 * 18 17 16 21 21 H 1.48500 * 109.47091 * 300.00260 * 20 18 17 22 22 H 1.48497 * 109.47150 * 60.00210 * 20 18 17 23 23 H 1.48501 * 109.47167 * 180.02562 * 20 18 17 24 24 C 1.38116 * 120.05539 * 0.04520 * 17 16 15 25 25 C 1.52527 * 111.65466 * 76.98704 * 6 5 4 26 26 C 1.53710 * 109.64203 * 283.00799 * 25 6 5 27 27 H 1.09004 * 109.46836 * 298.77900 * 1 2 3 28 28 H 1.08994 * 109.46834 * 58.77950 * 1 2 3 29 29 H 1.08997 * 109.46829 * 178.77878 * 1 2 3 30 30 H 1.08994 * 109.47077 * 181.21701 * 3 2 1 31 31 H 1.08998 * 109.47050 * 301.22393 * 3 2 1 32 32 H 1.09005 * 109.46593 * 61.22028 * 3 2 1 33 33 H 1.09001 * 109.89466 * 45.46045 * 4 2 1 34 34 H 1.08997 * 109.89592 * 284.34451 * 4 2 1 35 35 H 1.09002 * 109.44430 * 60.92050 * 5 4 2 36 36 H 1.09002 * 109.44501 * 180.82233 * 5 4 2 37 37 H 1.08996 * 109.04432 * 316.42964 * 6 5 4 38 38 H 0.97000 * 120.00106 * 335.00242 * 7 6 5 39 39 H 1.09000 * 109.46528 * 299.99153 * 10 8 7 40 40 H 1.08990 * 109.47443 * 59.99442 * 10 8 7 41 41 H 1.09007 * 109.47128 * 299.99701 * 11 10 8 42 42 H 1.09004 * 109.47351 * 59.99638 * 11 10 8 43 43 H 1.08006 * 120.02544 * 359.97438 * 14 13 12 44 44 H 1.07992 * 119.97485 * 180.27085 * 15 14 13 45 45 H 1.08004 * 119.94529 * 179.70470 * 16 15 14 46 46 H 1.09001 * 109.47177 * 125.02192 * 18 17 16 47 47 H 0.96700 * 114.00036 * 179.97438 * 19 18 17 48 48 H 1.08004 * 120.03223 * 180.02562 * 24 17 16 49 49 H 1.09003 * 109.43856 * 162.95659 * 25 6 5 50 50 H 1.09003 * 109.41374 * 43.04810 * 25 6 5 51 51 H 1.08994 * 109.89679 * 299.68606 * 26 25 6 52 52 H 1.09000 * 109.89380 * 178.56965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5023 -0.9130 1.5063 5 6 3.9901 -1.2119 1.2619 6 6 4.1432 -2.0547 -0.0001 7 7 5.4685 -2.6790 -0.0002 8 6 5.6761 -3.8196 -0.6876 9 8 4.7656 -4.3293 -1.3056 10 6 7.0393 -4.4621 -0.6871 11 6 7.0037 -5.7343 -1.5362 12 8 8.2964 -6.3433 -1.5363 13 6 8.4373 -7.4921 -2.2486 14 6 7.3523 -8.0253 -2.9287 15 6 7.4994 -9.1902 -3.6569 16 6 8.7239 -9.8307 -3.6983 17 6 9.8058 -9.3040 -3.0169 18 6 11.1392 -10.0045 -3.0647 19 8 11.4784 -10.4729 -1.7579 20 14 11.0398 -11.4498 -4.2360 21 1 9.9989 -12.3983 -3.7646 22 1 10.6874 -10.9631 -5.5940 23 1 12.3536 -12.1405 -4.2826 24 6 9.6653 -8.1366 -2.2922 25 6 3.9901 -1.2117 -1.2620 26 6 2.5022 -0.9129 -1.5064 27 1 -0.3633 0.4948 0.9008 28 1 -0.3633 0.5326 -0.8788 29 1 -0.3633 -1.0274 -0.0219 30 1 3.5900 1.7406 -0.0218 31 1 2.1240 2.2743 -0.8788 32 1 2.1596 2.2612 0.9008 33 1 1.9530 -1.8456 1.6355 34 1 2.3901 -0.2895 2.3932 35 1 4.5333 -0.2747 1.1402 36 1 4.3954 -1.7575 2.1140 37 1 3.3834 -2.8362 -0.0002 38 1 6.1966 -2.2715 0.4945 39 1 7.7685 -3.7672 -1.1036 40 1 7.3213 -4.7154 0.3347 41 1 6.2745 -6.4291 -1.1193 42 1 6.7216 -5.4814 -2.5582 43 1 6.3942 -7.5280 -2.8924 44 1 6.6561 -9.6034 -4.1901 45 1 8.8357 -10.7438 -4.2642 46 1 11.9032 -9.3083 -3.4108 47 1 12.3265 -10.9353 -1.7137 48 1 10.5106 -7.7254 -1.7605 49 1 4.3953 -1.7574 -2.1142 50 1 4.5331 -0.2746 -1.1397 51 1 1.9530 -1.8454 -1.6356 52 1 2.3900 -0.2893 -2.3933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:11:08 Heat of formation + Delta-G solvation = -131.313696 kcal Electronic energy + Delta-G solvation = -28055.316271 eV Core-core repulsion = 24143.003118 eV Total energy + Delta-G solvation = -3912.313153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44417 -40.93257 -39.11516 -37.94303 -37.31138 -34.18130 -33.03948 -32.61270 -32.00883 -30.86206 -29.18339 -28.33816 -27.29638 -26.68463 -24.83898 -23.71765 -23.48178 -22.00176 -21.52074 -21.20238 -19.17614 -18.47337 -17.91225 -17.53239 -17.48288 -17.31481 -16.90997 -16.19696 -15.94746 -15.84401 -15.64122 -15.10936 -14.90493 -14.75357 -14.53921 -14.32122 -14.16181 -13.94791 -13.86671 -13.72198 -13.45532 -13.36414 -13.30217 -13.15847 -13.06264 -13.01706 -12.95739 -12.85667 -12.49229 -12.37688 -12.13858 -12.11223 -11.89370 -11.83678 -11.74138 -11.65314 -11.07823 -10.72564 -10.42013 -10.37544 -10.27839 -9.99907 -9.93041 -9.30814 0.16281 0.34414 1.14965 1.47252 1.52414 1.52848 1.69715 1.84936 1.91821 1.97912 2.03927 2.49390 2.60177 2.69328 3.43898 3.54995 3.75243 3.80077 3.84236 3.86501 3.95869 4.03052 4.09070 4.21090 4.22363 4.23242 4.34633 4.38889 4.47546 4.54488 4.60284 4.65813 4.67568 4.75185 4.80413 4.81582 4.84287 4.87526 4.88185 4.90502 4.94716 5.17056 5.20549 5.24602 5.27194 5.32570 5.39803 5.40700 5.47757 5.52539 5.60738 5.64968 5.69946 6.29622 6.49113 6.81963 7.18274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.059 2.941 3 C -0.454 4.454 4 C -0.411 4.411 5 C -0.113 4.113 6 C 0.135 3.865 7 N -0.714 5.714 8 C 0.517 3.483 9 O -0.584 6.584 10 C -0.133 4.133 11 C 0.074 3.926 12 O -0.321 6.321 13 C 0.118 3.882 14 C -0.212 4.212 15 C -0.077 4.077 16 C -0.173 4.173 17 C -0.049 4.049 18 C -0.085 4.085 19 O -0.562 6.562 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.258 1.258 23 H -0.252 1.252 24 C -0.135 4.135 25 C -0.116 4.116 26 C -0.423 4.423 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.418 0.582 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.137 0.863 44 H 0.150 0.850 45 H 0.133 0.867 46 H 0.098 0.902 47 H 0.399 0.601 48 H 0.137 0.863 49 H 0.039 0.961 50 H 0.084 0.916 51 H 0.061 0.939 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 4.061 2.053 5.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.251 2.749 3 C -0.561 4.561 4 C -0.497 4.497 5 C -0.151 4.151 6 C 0.030 3.970 7 N -0.365 5.365 8 C 0.304 3.696 9 O -0.464 6.464 10 C -0.172 4.172 11 C -0.002 4.002 12 O -0.235 6.235 13 C 0.073 3.927 14 C -0.231 4.231 15 C -0.095 4.095 16 C -0.191 4.191 17 C -0.049 4.049 18 C -0.195 4.195 19 O -0.372 6.372 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.182 1.182 23 H -0.176 1.176 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.507 4.507 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.256 0.744 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.155 0.845 44 H 0.168 0.832 45 H 0.150 0.850 46 H 0.116 0.884 47 H 0.250 0.750 48 H 0.155 0.845 49 H 0.058 0.942 50 H 0.102 0.898 51 H 0.080 0.920 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.681 3.384 1.308 3.999 hybrid contribution 0.324 0.016 0.049 0.328 sum 2.005 3.401 1.357 4.174 Atomic orbital electron populations 1.26300 1.22266 1.04184 1.04491 0.78635 0.65082 0.66127 0.65032 1.26171 1.06763 1.18602 1.04585 1.26302 0.99411 1.08510 1.15508 1.21469 0.97773 1.00413 0.95433 1.21081 0.84364 0.95548 0.95982 1.46036 1.13967 1.24951 1.51589 1.20645 0.90068 0.80769 0.78091 1.90731 1.46389 1.64487 1.44805 1.21445 0.94962 0.96502 1.04304 1.22437 0.82437 0.94347 1.00930 1.85946 1.33976 1.36161 1.67400 1.19139 0.94621 0.86513 0.92461 1.21525 0.98969 0.99853 1.02760 1.21175 0.97781 0.93825 0.96705 1.21164 0.93366 1.01435 1.03146 1.19359 0.94903 0.94180 0.96489 1.24854 0.95679 1.06098 0.92861 1.86470 1.44731 1.78179 1.27780 0.85204 0.80350 0.76544 0.77074 1.19554 1.18192 1.17605 1.20356 0.96099 0.96310 1.02636 1.21557 0.97195 1.00076 0.96574 1.26530 0.99747 1.08082 1.16298 0.90880 0.91465 0.91743 0.90644 0.91467 0.90793 0.90978 0.88947 0.89146 0.90659 0.91614 0.74445 0.85478 0.85565 0.91878 0.91741 0.84481 0.83232 0.84995 0.88427 0.75033 0.84486 0.94172 0.89792 0.91990 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.17 8.65 113.37 0.98 2.15 16 2 Si 1.06 -6.16 11.59 68.60 0.80 -5.36 16 3 C -0.45 2.42 8.65 113.37 0.98 3.40 16 4 C -0.41 2.19 4.98 72.22 0.36 2.55 16 5 C -0.11 0.64 5.05 30.68 0.15 0.79 16 6 C 0.13 -0.11 2.03 44.68 0.09 -0.02 16 7 N -0.71 1.87 5.05 -444.03 -2.24 -0.38 16 8 C 0.52 1.36 7.58 87.66 0.66 2.03 16 9 O -0.58 -6.95 15.65 -3.02 -0.05 -7.00 16 10 C -0.13 0.30 6.07 29.85 0.18 0.48 16 11 C 0.07 0.25 4.03 71.98 0.29 0.54 16 12 O -0.32 -2.02 10.14 -92.38 -0.94 -2.95 16 13 C 0.12 0.92 6.69 22.51 0.15 1.07 16 14 C -0.21 -1.35 9.04 22.37 0.20 -1.15 16 15 C -0.08 -0.36 10.04 22.25 0.22 -0.13 16 16 C -0.17 -0.90 8.67 22.28 0.19 -0.70 16 17 C -0.05 -0.28 5.38 -19.88 -0.11 -0.39 16 18 C -0.09 -0.05 2.79 71.24 0.20 0.15 16 19 O -0.56 -0.82 12.81 -148.98 -1.91 -2.73 16 20 Si 0.98 -0.46 25.14 68.60 1.72 1.26 16 21 H -0.27 -0.86 7.04 99.48 0.70 -0.16 16 22 H -0.26 -0.20 7.11 99.48 0.71 0.51 16 23 H -0.25 0.36 7.11 99.48 0.71 1.07 16 24 C -0.14 -0.98 9.62 22.36 0.22 -0.76 16 25 C -0.12 0.00 5.18 30.68 0.16 0.16 16 26 C -0.42 0.27 4.98 72.22 0.36 0.63 16 27 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 28 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 30 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 33 H 0.07 -0.25 7.99 -2.39 -0.02 -0.27 16 34 H 0.09 -0.65 7.99 -2.39 -0.02 -0.67 16 35 H 0.09 -0.83 7.69 -2.39 -0.02 -0.84 16 36 H 0.07 -0.45 8.13 -2.39 -0.02 -0.47 16 37 H 0.07 0.29 7.34 -2.39 -0.02 0.27 16 38 H 0.42 -3.92 8.58 -92.71 -0.80 -4.72 16 39 H 0.13 -0.79 8.14 -2.39 -0.02 -0.80 16 40 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.06 0.32 7.61 -2.38 -0.02 0.30 16 42 H 0.06 0.30 7.63 -2.39 -0.02 0.28 16 43 H 0.14 0.63 6.30 -2.91 -0.02 0.61 16 44 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 45 H 0.13 0.29 4.86 -2.91 -0.01 0.27 16 46 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 47 H 0.40 -3.25 8.74 -74.06 -0.65 -3.89 16 48 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 49 H 0.04 0.22 7.92 -2.39 -0.02 0.20 16 50 H 0.08 -0.34 7.69 -2.39 -0.02 -0.36 16 51 H 0.06 0.15 7.99 -2.39 -0.02 0.14 16 52 H 0.08 -0.07 7.99 -2.39 -0.02 -0.08 16 Total: 0.00 -20.10 413.66 2.90 -17.20 By element: Atomic # 1 Polarization: -11.06 SS G_CDS: 0.21 Total: -10.84 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.30 Total: 10.81 kcal Atomic # 7 Polarization: 1.87 SS G_CDS: -2.24 Total: -0.38 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -2.89 Total: -12.68 kcal Atomic # 14 Polarization: -6.62 SS G_CDS: 2.52 Total: -4.10 kcal Total: -20.10 2.90 -17.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.116 kcal (2) G-P(sol) polarization free energy of solvation -20.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds