Wall clock time and date at job start Sun Mar 7 2021 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86297 * 110.00173 * 2 1 4 4 C 1.87380 * 109.94793 * 121.22057 * 2 1 3 5 5 C 1.53707 * 107.28613 * 164.90577 * 4 2 1 6 6 C 1.52526 * 109.63880 * 300.87386 * 5 4 2 7 7 N 1.46507 * 109.04145 * 197.55257 * 6 5 4 8 8 C 1.34774 * 119.99975 * 155.00011 * 7 6 5 9 9 O 1.21287 * 120.00070 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.99994 * 179.97438 * 8 7 6 11 11 O 1.42899 * 109.47561 * 180.02562 * 10 8 7 12 12 C 1.35894 * 117.00434 * 180.02562 * 11 10 8 13 13 C 1.38709 * 120.05744 * 359.97438 * 12 11 10 14 14 C 1.38159 * 119.94698 * 180.02562 * 13 12 11 15 15 C 1.38241 * 120.05581 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.94735 * 179.97438 * 15 14 13 17 17 O 1.42895 * 109.47147 * 245.00352 * 16 15 14 18 18 Si 1.86299 * 109.46748 * 4.99994 * 16 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 18 16 15 20 20 H 1.48505 * 109.47505 * 299.99883 * 18 16 15 21 21 H 1.48503 * 109.47188 * 60.00070 * 18 16 15 22 22 C 1.38293 * 120.11270 * 0.27563 * 15 14 13 23 23 C 1.38126 * 120.05159 * 359.45046 * 22 15 14 24 24 N 1.48002 * 120.02520 * 180.29946 * 23 22 15 25 25 O 1.21798 * 120.00044 * 0.24677 * 24 23 22 26 26 O 1.21801 * 119.99648 * 180.25377 * 24 23 22 27 27 C 1.52519 * 111.65797 * 76.99234 * 6 5 4 28 28 C 1.53719 * 109.63754 * 283.00954 * 27 6 5 29 29 H 1.09000 * 109.47003 * 298.77820 * 1 2 3 30 30 H 1.08998 * 109.47340 * 58.78384 * 1 2 3 31 31 H 1.08998 * 109.46997 * 178.78058 * 1 2 3 32 32 H 1.09003 * 109.47142 * 181.22005 * 3 2 1 33 33 H 1.09004 * 109.47151 * 301.21660 * 3 2 1 34 34 H 1.08997 * 109.47294 * 61.21563 * 3 2 1 35 35 H 1.08993 * 109.89597 * 45.45499 * 4 2 1 36 36 H 1.09012 * 109.88930 * 284.34811 * 4 2 1 37 37 H 1.09002 * 109.44563 * 180.82190 * 5 4 2 38 38 H 1.08999 * 109.44238 * 60.92271 * 5 4 2 39 39 H 1.09004 * 109.04193 * 316.49804 * 6 5 4 40 40 H 0.96996 * 119.99778 * 334.99235 * 7 6 5 41 41 H 1.08998 * 109.47376 * 59.99560 * 10 8 7 42 42 H 1.09005 * 109.46967 * 300.00150 * 10 8 7 43 43 H 1.08008 * 120.02343 * 359.97438 * 13 12 11 44 44 H 1.08008 * 119.97393 * 179.97438 * 14 13 12 45 45 H 1.09000 * 109.47318 * 124.99465 * 16 15 14 46 46 H 0.96700 * 113.99916 * 179.97438 * 17 16 15 47 47 H 1.08002 * 119.97160 * 179.70751 * 22 15 14 48 48 H 1.09000 * 109.44657 * 43.05827 * 27 6 5 49 49 H 1.08995 * 109.44303 * 162.96103 * 27 6 5 50 50 H 1.09000 * 109.89450 * 299.67636 * 28 27 6 51 51 H 1.09001 * 109.89206 * 178.57444 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5002 1.7506 0.0000 4 6 2.5022 -0.9130 1.5063 5 6 3.9901 -1.2118 1.2619 6 6 4.1431 -2.0547 0.0000 7 7 5.4685 -2.6790 0.0000 8 6 5.6761 -3.8196 -0.6873 9 8 4.7656 -4.3294 -1.3055 10 6 7.0395 -4.4615 -0.6877 11 8 7.0066 -5.6493 -1.4814 12 6 8.1641 -6.3536 -1.5862 13 6 9.3081 -5.9105 -0.9390 14 6 10.4837 -6.6280 -1.0476 15 6 10.5204 -7.7871 -1.8001 16 6 11.8043 -8.5676 -1.9173 17 8 12.2535 -8.5448 -3.2736 18 14 13.1001 -7.7996 -0.8210 19 1 14.3651 -8.5690 -0.9360 20 1 13.3348 -6.3947 -1.2412 21 1 12.6333 -7.8233 0.5886 22 6 9.3826 -8.2284 -2.4506 23 6 8.2034 -7.5176 -2.3405 24 7 6.9843 -7.9940 -3.0316 25 8 7.0196 -9.0155 -3.6939 26 8 5.9459 -7.3643 -2.9380 27 6 3.9901 -1.2118 -1.2619 28 6 2.5022 -0.9130 -1.5063 29 1 -0.3633 0.4947 0.9007 30 1 -0.3634 0.5326 -0.8788 31 1 -0.3633 -1.0274 -0.0219 32 1 3.5900 1.7406 -0.0219 33 1 2.1240 2.2742 -0.8789 34 1 2.1595 2.2613 0.9007 35 1 1.9530 -1.8455 1.6356 36 1 2.3900 -0.2893 2.3933 37 1 4.3953 -1.7574 2.1141 38 1 4.5331 -0.2746 1.1403 39 1 3.3825 -2.8355 -0.0006 40 1 6.1965 -2.2714 0.4946 41 1 7.3223 -4.7146 0.3341 42 1 7.7682 -3.7663 -1.1047 43 1 9.2799 -5.0047 -0.3513 44 1 11.3748 -6.2831 -0.5441 45 1 11.6321 -9.5987 -1.6087 46 1 13.0774 -9.0284 -3.4233 47 1 9.4151 -9.1317 -3.0417 48 1 4.5332 -0.2746 -1.1403 49 1 4.3953 -1.7574 -2.1140 50 1 1.9529 -1.8455 -1.6356 51 1 2.3900 -0.2894 -2.3933 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:17:29 Heat of formation + Delta-G solvation = -117.935182 kcal Electronic energy + Delta-G solvation = -33057.785811 eV Core-core repulsion = 28470.573978 eV Total energy + Delta-G solvation = -4587.211833 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 382.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.31207 -41.80954 -40.88869 -39.47659 -37.86333 -37.59991 -37.34837 -34.15586 -33.50643 -32.35433 -31.99883 -30.07587 -29.10941 -28.32836 -27.84246 -26.78203 -26.09491 -24.07744 -23.48435 -22.75414 -21.58123 -21.54113 -20.46132 -19.80317 -19.18202 -18.69467 -18.57060 -18.34213 -17.60079 -17.46316 -17.09508 -16.48151 -16.14244 -15.93819 -15.76728 -15.67599 -15.26007 -15.01797 -14.62505 -14.37957 -14.10431 -13.93538 -13.86093 -13.76617 -13.71072 -13.35739 -13.29769 -13.16361 -13.14919 -13.05369 -12.92301 -12.71760 -12.67562 -12.49640 -12.36359 -12.28262 -12.16017 -12.13082 -11.98126 -11.81292 -11.73470 -11.04783 -10.86477 -10.71871 -10.41464 -10.40377 -10.29858 -10.01146 -9.79439 -1.33090 -0.26416 0.13324 0.32730 1.13472 1.20918 1.46073 1.48200 1.56300 1.85539 1.92922 1.97264 1.99670 2.05666 2.33869 2.69848 3.06671 3.19967 3.31820 3.58198 3.58628 3.66023 3.78556 3.86266 3.95221 3.96281 4.08794 4.21893 4.22925 4.32632 4.39591 4.49485 4.54805 4.58604 4.67411 4.79653 4.81100 4.81484 4.84937 4.88077 4.89714 4.92384 5.05150 5.17195 5.17585 5.25660 5.28477 5.37515 5.48909 5.51638 5.60324 5.70738 5.73692 6.42086 6.47781 6.77438 7.18119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.061 2.939 3 C -0.451 4.451 4 C -0.410 4.410 5 C -0.110 4.110 6 C 0.136 3.864 7 N -0.706 5.706 8 C 0.505 3.495 9 O -0.565 6.565 10 C 0.024 3.976 11 O -0.290 6.290 12 C 0.192 3.808 13 C -0.190 4.190 14 C -0.020 4.020 15 C -0.114 4.114 16 C -0.090 4.090 17 O -0.566 6.566 18 Si 0.982 3.018 19 H -0.258 1.258 20 H -0.252 1.252 21 H -0.242 1.242 22 C 0.001 3.999 23 C -0.104 4.104 24 N 0.035 4.965 25 O -0.192 6.192 26 O -0.179 6.179 27 C -0.116 4.116 28 C -0.427 4.427 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.422 0.578 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.204 0.796 44 H 0.174 0.826 45 H 0.099 0.901 46 H 0.402 0.598 47 H 0.159 0.841 48 H 0.089 0.911 49 H 0.035 0.965 50 H 0.056 0.944 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.683 7.112 9.831 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.253 2.747 3 C -0.559 4.559 4 C -0.496 4.496 5 C -0.148 4.148 6 C 0.032 3.968 7 N -0.360 5.360 8 C 0.291 3.709 9 O -0.442 6.442 10 C -0.053 4.053 11 O -0.200 6.200 12 C 0.142 3.858 13 C -0.208 4.208 14 C -0.038 4.038 15 C -0.115 4.115 16 C -0.199 4.199 17 O -0.376 6.376 18 Si 0.803 3.197 19 H -0.182 1.182 20 H -0.176 1.176 21 H -0.165 1.165 22 C -0.018 4.018 23 C -0.189 4.189 24 N 0.545 4.455 25 O -0.402 6.402 26 O -0.391 6.391 27 C -0.154 4.154 28 C -0.510 4.510 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.260 0.740 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.221 0.779 44 H 0.191 0.809 45 H 0.117 0.883 46 H 0.253 0.747 47 H 0.177 0.823 48 H 0.108 0.892 49 H 0.054 0.946 50 H 0.075 0.925 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.455 7.631 10.055 16.390 hybrid contribution -0.472 -1.077 -0.991 1.538 sum 9.983 6.554 9.063 14.992 Atomic orbital electron populations 1.26337 1.22632 1.04050 1.04461 0.78618 0.64892 0.66276 0.64937 1.26138 1.06895 1.18255 1.04601 1.26268 0.99581 1.08431 1.15364 1.21458 0.97679 1.00498 0.95160 1.21087 0.84056 0.95449 0.96183 1.45806 1.14214 1.24329 1.51668 1.20509 0.89873 0.81390 0.79170 1.90846 1.45951 1.63874 1.43543 1.23136 0.96682 0.86236 0.99275 1.86473 1.29586 1.37322 1.66657 1.18930 0.87458 0.88139 0.91272 1.21724 0.89704 1.04963 1.04415 1.21687 0.98964 0.90588 0.92557 1.19527 0.94188 0.97616 1.00203 1.24976 0.98736 1.04487 0.91695 1.86462 1.47135 1.78760 1.25252 0.85243 0.76659 0.80085 0.77731 1.18227 1.17600 1.16485 1.20890 0.88140 0.98495 0.94245 1.20864 0.86881 1.01281 1.09864 1.43845 1.03064 0.99577 0.98973 1.94486 1.91936 1.14273 1.39549 1.94689 1.20302 1.56502 1.67585 1.21564 0.97134 1.00210 0.96536 1.26598 0.99941 1.07954 1.16554 0.90769 0.91610 0.91969 0.90366 0.91598 0.90646 0.91143 0.88614 0.90178 0.88664 0.92036 0.73957 0.83843 0.84138 0.77903 0.80882 0.88340 0.74679 0.82332 0.89250 0.94633 0.92476 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.79 8.65 113.37 0.98 1.77 16 2 Si 1.06 -5.97 11.59 68.60 0.80 -5.17 16 3 C -0.45 2.65 8.65 113.37 0.98 3.63 16 4 C -0.41 2.44 4.98 72.22 0.36 2.80 16 5 C -0.11 0.80 5.05 30.68 0.15 0.95 16 6 C 0.14 -0.16 2.03 44.67 0.09 -0.07 16 7 N -0.71 3.11 5.05 -444.03 -2.24 0.87 16 8 C 0.51 1.66 7.66 87.66 0.67 2.34 16 9 O -0.56 -9.71 16.17 15.99 0.26 -9.45 16 10 C 0.02 -0.12 5.22 71.23 0.37 0.26 16 11 O -0.29 -2.01 7.68 -63.34 -0.49 -2.50 16 12 C 0.19 0.64 6.67 22.51 0.15 0.79 16 13 C -0.19 1.34 9.04 22.36 0.20 1.54 16 14 C -0.02 0.14 8.66 22.25 0.19 0.34 16 15 C -0.11 0.28 5.39 -19.85 -0.11 0.17 16 16 C -0.09 0.59 2.79 71.24 0.20 0.78 16 17 O -0.57 2.18 12.81 -148.98 -1.91 0.28 16 18 Si 0.98 -8.97 25.13 68.60 1.72 -7.25 16 19 H -0.26 1.90 7.11 99.48 0.71 2.61 16 20 H -0.25 1.97 7.04 99.48 0.70 2.67 16 21 H -0.24 2.34 7.11 99.48 0.71 3.04 16 22 C 0.00 0.01 9.18 22.26 0.20 0.21 16 23 C -0.10 -0.95 6.87 36.48 0.25 -0.70 16 24 N 0.03 0.63 4.45 -46.24 -0.21 0.42 16 25 O -0.19 -3.69 18.45 18.89 0.35 -3.35 16 26 O -0.18 -4.17 17.24 25.61 0.44 -3.73 16 27 C -0.12 -0.05 5.18 30.68 0.16 0.11 16 28 C -0.43 -0.28 4.98 72.22 0.36 0.08 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 31 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 32 H 0.08 -0.57 7.96 -2.39 -0.02 -0.59 16 33 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 35 H 0.07 -0.25 7.99 -2.39 -0.02 -0.27 16 36 H 0.10 -0.79 7.99 -2.38 -0.02 -0.80 16 37 H 0.08 -0.68 8.13 -2.39 -0.02 -0.70 16 38 H 0.09 -1.09 7.69 -2.39 -0.02 -1.11 16 39 H 0.06 0.34 7.34 -2.38 -0.02 0.32 16 40 H 0.42 -5.77 8.58 -92.71 -0.80 -6.57 16 41 H 0.14 -1.99 7.66 -2.39 -0.02 -2.01 16 42 H 0.14 -1.87 7.66 -2.38 -0.02 -1.88 16 43 H 0.20 -3.50 6.30 -2.91 -0.02 -3.51 16 44 H 0.17 -2.28 4.86 -2.91 -0.01 -2.29 16 45 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16 46 H 0.40 -5.04 8.74 -74.06 -0.65 -5.69 16 47 H 0.16 0.61 7.61 -2.91 -0.02 0.59 16 48 H 0.09 -0.43 7.69 -2.39 -0.02 -0.45 16 49 H 0.03 0.25 7.92 -2.39 -0.02 0.23 16 50 H 0.06 0.28 7.99 -2.39 -0.02 0.26 16 51 H 0.07 0.05 7.99 -2.39 -0.02 0.03 16 Total: 0.00 -37.32 418.73 4.23 -33.10 By element: Atomic # 1 Polarization: -18.51 SS G_CDS: 0.28 Total: -18.24 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.22 Total: 15.01 kcal Atomic # 7 Polarization: 3.74 SS G_CDS: -2.45 Total: 1.29 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.35 Total: -18.75 kcal Atomic # 14 Polarization: -14.94 SS G_CDS: 2.52 Total: -12.42 kcal Total: -37.32 4.23 -33.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.836 kcal (2) G-P(sol) polarization free energy of solvation -37.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds