Wall clock time and date at job start Sun Mar 7 2021 06:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86304 * 109.99817 * 2 1 4 4 C 1.87376 * 109.94963 * 121.21752 * 2 1 3 5 5 C 1.53717 * 107.28042 * 73.84248 * 4 2 1 6 6 C 1.52530 * 109.63925 * 59.12799 * 5 4 2 7 7 N 1.46501 * 109.04160 * 162.44805 * 6 5 4 8 8 C 1.34778 * 119.99925 * 205.00222 * 7 6 5 9 9 O 1.21282 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00151 * 180.02562 * 8 7 6 11 11 O 1.42900 * 109.47255 * 179.97438 * 10 8 7 12 12 C 1.35899 * 116.99906 * 179.97438 * 11 10 8 13 13 C 1.38707 * 120.05667 * 359.72405 * 12 11 10 14 14 C 1.38164 * 119.94414 * 179.72029 * 13 12 11 15 15 C 1.38246 * 120.05245 * 0.57607 * 14 13 12 16 16 C 1.38289 * 120.11287 * 359.67822 * 15 14 13 17 17 C 1.50696 * 119.96936 * 180.02562 * 16 15 14 18 18 O 1.42907 * 109.47130 * 245.02015 * 17 16 15 19 19 Si 1.86299 * 109.47641 * 5.02128 * 17 16 15 20 20 H 1.48501 * 109.46866 * 59.99791 * 19 17 16 21 21 H 1.48500 * 109.47264 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47197 * 300.00057 * 19 17 16 23 23 C 1.38115 * 120.05590 * 0.04247 * 16 15 14 24 24 C 1.52515 * 111.65345 * 283.00760 * 6 5 4 25 25 C 1.53713 * 109.64262 * 76.99149 * 24 6 5 26 26 H 1.09007 * 109.46803 * 298.77947 * 1 2 3 27 27 H 1.09002 * 109.47189 * 58.78054 * 1 2 3 28 28 H 1.08998 * 109.46865 * 178.78063 * 1 2 3 29 29 H 1.09010 * 109.46818 * 181.21939 * 3 2 1 30 30 H 1.08998 * 109.47379 * 301.21582 * 3 2 1 31 31 H 1.08997 * 109.47083 * 61.22333 * 3 2 1 32 32 H 1.08997 * 109.89284 * 314.40525 * 4 2 1 33 33 H 1.09001 * 109.89757 * 193.28537 * 4 2 1 34 34 H 1.09002 * 109.44430 * 179.17299 * 5 4 2 35 35 H 1.09002 * 109.44501 * 299.07483 * 5 4 2 36 36 H 1.09000 * 109.04142 * 43.56908 * 6 5 4 37 37 H 0.96997 * 119.99964 * 24.99633 * 7 6 5 38 38 H 1.09001 * 109.46522 * 299.99739 * 10 8 7 39 39 H 1.09004 * 109.47314 * 59.99290 * 10 8 7 40 40 H 1.08001 * 120.03236 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.97954 * 180.27558 * 14 13 12 42 42 H 1.08008 * 119.94182 * 179.70063 * 15 14 13 43 43 H 1.09003 * 109.47269 * 125.02731 * 17 16 15 44 44 H 0.96699 * 113.99838 * 60.00717 * 18 17 16 45 45 H 1.07996 * 120.02954 * 179.97438 * 23 16 15 46 46 H 1.08997 * 109.44838 * 316.93794 * 24 6 5 47 47 H 1.09000 * 109.41698 * 197.02631 * 24 6 5 48 48 H 1.09002 * 109.89622 * 181.42539 * 25 24 6 49 49 H 1.09001 * 109.89163 * 60.31757 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5002 1.7507 0.0000 4 6 2.5023 -0.9129 1.5063 5 6 2.2742 -2.4132 1.2619 6 6 3.0139 -2.8453 -0.0001 7 7 3.1473 -4.3043 -0.0001 8 6 4.1481 -4.8895 -0.6874 9 8 4.9380 -4.2083 -1.3062 10 6 4.2849 -6.3902 -0.6879 11 8 5.4124 -6.7655 -1.4816 12 6 5.6784 -8.0941 -1.5865 13 6 4.8743 -9.0171 -0.9342 14 6 5.1433 -10.3676 -1.0472 15 6 6.2200 -10.7985 -1.7997 16 6 7.0263 -9.8800 -2.4467 17 6 8.1987 -10.3533 -3.2666 18 8 9.4136 -9.8978 -2.6679 19 14 8.1991 -12.2151 -3.3329 20 1 6.9365 -12.6885 -3.9551 21 1 9.3548 -12.6815 -4.1404 22 1 8.3065 -12.7595 -1.9555 23 6 6.7581 -8.5292 -2.3416 24 6 2.2742 -2.4132 -1.2619 25 6 2.5022 -0.9129 -1.5063 26 1 -0.3633 0.4948 0.9008 27 1 -0.3634 0.5327 -0.8789 28 1 -0.3633 -1.0274 -0.0219 29 1 3.5900 1.7407 -0.0219 30 1 2.1240 2.2743 -0.8788 31 1 2.1596 2.2613 0.9007 32 1 1.9547 -0.5942 2.3932 33 1 3.5666 -0.7158 1.6355 34 1 2.6484 -2.9807 2.1139 35 1 1.2077 -2.6030 1.1403 36 1 4.0082 -2.3986 -0.0001 37 1 2.5153 -4.8490 0.4946 38 1 4.4261 -6.7425 0.3339 39 1 3.3825 -6.8373 -1.1049 40 1 4.0362 -8.6808 -0.3420 41 1 4.5150 -11.0870 -0.5432 42 1 6.4315 -11.8544 -1.8828 43 1 8.1199 -9.9537 -4.2777 44 1 9.5503 -10.2154 -1.7648 45 1 7.3883 -7.8122 -2.8467 46 1 1.2078 -2.6030 -1.1403 47 1 2.6488 -2.9806 -2.1139 48 1 1.9547 -0.5941 -2.3933 49 1 3.5664 -0.7157 -1.6356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:18:20 Heat of formation + Delta-G solvation = -127.211496 kcal Electronic energy + Delta-G solvation = -26483.478872 eV Core-core repulsion = 22726.881223 eV Total energy + Delta-G solvation = -3756.597649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55701 -40.71738 -39.08724 -37.79521 -37.15792 -34.09854 -32.49146 -32.13291 -31.65459 -29.63727 -29.15586 -28.50266 -26.91065 -26.19579 -23.70964 -23.59812 -22.63275 -21.57520 -21.36986 -19.32223 -18.49083 -17.90029 -17.44144 -17.27891 -17.09808 -16.74793 -16.21360 -16.13452 -15.62899 -15.49248 -15.02583 -14.98065 -14.95180 -14.45007 -14.12773 -14.06942 -13.95483 -13.90261 -13.55588 -13.44083 -13.39601 -13.30860 -13.16766 -13.07636 -12.99786 -12.60969 -12.56484 -12.25549 -12.20885 -12.11463 -11.96024 -11.85254 -11.54446 -10.93421 -10.84433 -10.54165 -10.46247 -10.35100 -10.06148 -9.93883 -9.27102 0.19024 0.39092 1.12511 1.43102 1.46455 1.52350 1.52779 1.67731 1.80183 1.84132 1.91266 2.53139 2.58844 2.65818 3.44851 3.49805 3.64141 3.67021 3.76810 3.86530 3.87903 3.98955 3.99793 4.11738 4.16204 4.28921 4.36213 4.42060 4.53890 4.55062 4.65057 4.67125 4.67995 4.70796 4.72332 4.73484 4.81443 4.96150 5.01270 5.13516 5.21540 5.22535 5.26478 5.33652 5.37124 5.41089 5.42276 5.50399 5.53263 5.64309 6.25836 6.41025 6.55555 7.13426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.445 4.445 2 Si 0.991 3.009 3 C -0.448 4.448 4 C -0.403 4.403 5 C -0.115 4.115 6 C 0.138 3.862 7 N -0.726 5.726 8 C 0.515 3.485 9 O -0.510 6.510 10 C 0.040 3.960 11 O -0.288 6.288 12 C 0.129 3.871 13 C -0.206 4.206 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.080 4.080 17 C -0.083 4.083 18 O -0.536 6.536 19 Si 0.956 3.044 20 H -0.250 1.250 21 H -0.254 1.254 22 H -0.252 1.252 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.404 4.404 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.377 0.623 45 H 0.138 0.862 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -1.705 3.928 6.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.188 2.812 3 C -0.556 4.556 4 C -0.489 4.489 5 C -0.153 4.153 6 C 0.034 3.966 7 N -0.379 5.379 8 C 0.299 3.701 9 O -0.383 6.383 10 C -0.039 4.039 11 O -0.200 6.200 12 C 0.084 3.916 13 C -0.225 4.225 14 C -0.090 4.090 15 C -0.181 4.181 16 C -0.080 4.080 17 C -0.194 4.194 18 O -0.341 6.341 19 Si 0.778 3.222 20 H -0.174 1.174 21 H -0.178 1.178 22 H -0.176 1.176 23 C -0.136 4.136 24 C -0.156 4.156 25 C -0.490 4.490 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.235 0.765 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.224 0.776 45 H 0.156 0.844 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.436 -1.652 2.765 5.482 hybrid contribution -0.739 -0.202 0.972 1.238 sum -5.175 -1.854 3.737 6.647 Atomic orbital electron populations 1.26089 1.20350 1.04378 1.04484 0.79657 0.67431 0.67001 0.67154 1.26073 1.06455 1.18587 1.04449 1.26209 1.06720 1.01209 1.14785 1.21459 1.00519 0.96900 0.96443 1.21101 1.01446 0.78867 0.95166 1.45981 1.31023 1.08231 1.52672 1.20020 0.81323 0.89106 0.79638 1.90790 1.41593 1.64752 1.41185 1.22485 0.90281 0.93933 0.97200 1.86178 1.46077 1.20790 1.66942 1.19058 0.94812 0.82099 0.95633 1.21291 1.02363 0.93966 1.04897 1.20881 0.96318 0.94966 0.96855 1.20991 0.97327 0.99141 1.00644 1.20120 0.96986 0.92996 0.97943 1.25060 0.83284 1.11928 0.99088 1.86543 1.37759 1.76405 1.33383 0.85602 0.81303 0.73824 0.81441 1.17357 1.17788 1.17553 1.20278 0.96856 0.95438 1.01056 1.21563 1.00070 0.96460 0.97468 1.26247 1.06688 1.01596 1.14485 0.91223 0.91187 0.91277 0.91114 0.91181 0.91229 0.90055 0.90218 0.91097 0.91051 0.89022 0.76503 0.88823 0.88812 0.85242 0.85196 0.85936 0.86195 0.77614 0.84420 0.91623 0.91389 0.90388 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.95 8.65 101.05 0.87 1.83 16 2 Si 0.99 -2.84 11.59 -169.99 -1.97 -4.81 16 3 C -0.45 0.64 8.65 101.05 0.87 1.52 16 4 C -0.40 0.99 4.98 37.53 0.19 1.18 16 5 C -0.12 0.30 5.05 -26.60 -0.13 0.16 16 6 C 0.14 -0.09 2.03 -68.42 -0.14 -0.23 16 7 N -0.73 1.01 5.05 -54.28 -0.27 0.74 16 8 C 0.51 0.89 7.66 -10.99 -0.08 0.80 16 9 O -0.51 -3.43 16.17 -14.35 -0.23 -3.66 16 10 C 0.04 -0.02 5.22 36.00 0.19 0.17 16 11 O -0.29 -0.96 9.67 -39.33 -0.38 -1.34 16 12 C 0.13 0.29 6.69 -39.22 -0.26 0.03 16 13 C -0.21 -0.01 9.04 -39.44 -0.36 -0.36 16 14 C -0.07 0.02 10.04 -39.61 -0.40 -0.38 16 15 C -0.16 -0.06 8.67 -39.56 -0.34 -0.40 16 16 C -0.08 -0.09 5.35 -104.65 -0.56 -0.65 16 17 C -0.08 -0.01 2.80 36.00 0.10 0.09 16 18 O -0.54 -0.53 12.83 -35.23 -0.45 -0.98 16 19 Si 0.96 -0.48 25.14 -169.99 -4.27 -4.76 16 20 H -0.25 0.00 7.11 56.52 0.40 0.40 16 21 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 22 H -0.25 0.13 7.04 56.52 0.40 0.53 16 23 C -0.12 -0.29 9.62 -39.43 -0.38 -0.67 16 24 C -0.12 0.04 5.18 -26.61 -0.14 -0.10 16 25 C -0.40 0.34 4.98 37.53 0.19 0.53 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 30 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.08 -0.23 7.99 -51.93 -0.41 -0.65 16 33 H 0.08 -0.15 7.99 -51.93 -0.41 -0.57 16 34 H 0.07 -0.19 8.13 -51.93 -0.42 -0.61 16 35 H 0.07 -0.27 7.69 -51.93 -0.40 -0.67 16 36 H 0.09 0.13 7.34 -51.93 -0.38 -0.25 16 37 H 0.40 -1.90 8.58 -40.82 -0.35 -2.25 16 38 H 0.09 -0.29 7.65 -51.93 -0.40 -0.69 16 39 H 0.09 -0.29 7.68 -51.93 -0.40 -0.69 16 40 H 0.13 -0.34 6.30 -52.49 -0.33 -0.67 16 41 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 42 H 0.12 -0.12 4.86 -52.48 -0.26 -0.38 16 43 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 44 H 0.38 -0.88 8.70 45.56 0.40 -0.48 16 45 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 46 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 47 H 0.07 0.14 7.92 -51.93 -0.41 -0.27 16 48 H 0.08 -0.07 7.99 -51.93 -0.41 -0.49 16 49 H 0.08 0.01 7.99 -51.93 -0.41 -0.40 16 LS Contribution 392.67 15.07 5.92 5.92 Total: 0.00 -8.74 392.67 -9.60 -18.34 By element: Atomic # 1 Polarization: -5.42 SS G_CDS: -7.55 Total: -12.97 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.38 Total: 3.52 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -0.27 Total: 0.74 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -1.06 Total: -5.98 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: -6.24 Total: -9.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -8.74 -9.60 -18.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.872 kcal (2) G-P(sol) polarization free energy of solvation -8.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds