Wall clock time and date at job start Sun Mar 7 2021 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86304 * 109.99817 * 2 1 4 4 C 1.87376 * 109.94963 * 121.21752 * 2 1 3 5 5 C 1.53717 * 107.28042 * 73.84248 * 4 2 1 6 6 C 1.52530 * 109.63925 * 59.12799 * 5 4 2 7 7 N 1.46501 * 109.04160 * 162.44805 * 6 5 4 8 8 C 1.34778 * 119.99925 * 205.00222 * 7 6 5 9 9 O 1.21282 * 119.99724 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00151 * 180.02562 * 8 7 6 11 11 O 1.42900 * 109.47255 * 179.97438 * 10 8 7 12 12 C 1.35899 * 116.99906 * 179.97438 * 11 10 8 13 13 C 1.38707 * 120.05667 * 359.72405 * 12 11 10 14 14 C 1.38164 * 119.94414 * 179.72029 * 13 12 11 15 15 C 1.38246 * 120.05245 * 0.57607 * 14 13 12 16 16 C 1.38289 * 120.11287 * 359.67822 * 15 14 13 17 17 C 1.50696 * 119.96936 * 180.02562 * 16 15 14 18 18 O 1.42907 * 109.47130 * 245.02015 * 17 16 15 19 19 Si 1.86299 * 109.47641 * 5.02128 * 17 16 15 20 20 H 1.48501 * 109.46866 * 59.99791 * 19 17 16 21 21 H 1.48500 * 109.47264 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47197 * 300.00057 * 19 17 16 23 23 C 1.38115 * 120.05590 * 0.04247 * 16 15 14 24 24 C 1.52515 * 111.65345 * 283.00760 * 6 5 4 25 25 C 1.53713 * 109.64262 * 76.99149 * 24 6 5 26 26 H 1.09007 * 109.46803 * 298.77947 * 1 2 3 27 27 H 1.09002 * 109.47189 * 58.78054 * 1 2 3 28 28 H 1.08998 * 109.46865 * 178.78063 * 1 2 3 29 29 H 1.09010 * 109.46818 * 181.21939 * 3 2 1 30 30 H 1.08998 * 109.47379 * 301.21582 * 3 2 1 31 31 H 1.08997 * 109.47083 * 61.22333 * 3 2 1 32 32 H 1.08997 * 109.89284 * 314.40525 * 4 2 1 33 33 H 1.09001 * 109.89757 * 193.28537 * 4 2 1 34 34 H 1.09002 * 109.44430 * 179.17299 * 5 4 2 35 35 H 1.09002 * 109.44501 * 299.07483 * 5 4 2 36 36 H 1.09000 * 109.04142 * 43.56908 * 6 5 4 37 37 H 0.96997 * 119.99964 * 24.99633 * 7 6 5 38 38 H 1.09001 * 109.46522 * 299.99739 * 10 8 7 39 39 H 1.09004 * 109.47314 * 59.99290 * 10 8 7 40 40 H 1.08001 * 120.03236 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.97954 * 180.27558 * 14 13 12 42 42 H 1.08008 * 119.94182 * 179.70063 * 15 14 13 43 43 H 1.09003 * 109.47269 * 125.02731 * 17 16 15 44 44 H 0.96699 * 113.99838 * 60.00717 * 18 17 16 45 45 H 1.07996 * 120.02954 * 179.97438 * 23 16 15 46 46 H 1.08997 * 109.44838 * 316.93794 * 24 6 5 47 47 H 1.09000 * 109.41698 * 197.02631 * 24 6 5 48 48 H 1.09002 * 109.89622 * 181.42539 * 25 24 6 49 49 H 1.09001 * 109.89163 * 60.31757 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5002 1.7507 0.0000 4 6 2.5023 -0.9129 1.5063 5 6 2.2742 -2.4132 1.2619 6 6 3.0139 -2.8453 -0.0001 7 7 3.1473 -4.3043 -0.0001 8 6 4.1481 -4.8895 -0.6874 9 8 4.9380 -4.2083 -1.3062 10 6 4.2849 -6.3902 -0.6879 11 8 5.4124 -6.7655 -1.4816 12 6 5.6784 -8.0941 -1.5865 13 6 4.8743 -9.0171 -0.9342 14 6 5.1433 -10.3676 -1.0472 15 6 6.2200 -10.7985 -1.7997 16 6 7.0263 -9.8800 -2.4467 17 6 8.1987 -10.3533 -3.2666 18 8 9.4136 -9.8978 -2.6679 19 14 8.1991 -12.2151 -3.3329 20 1 6.9365 -12.6885 -3.9551 21 1 9.3548 -12.6815 -4.1404 22 1 8.3065 -12.7595 -1.9555 23 6 6.7581 -8.5292 -2.3416 24 6 2.2742 -2.4132 -1.2619 25 6 2.5022 -0.9129 -1.5063 26 1 -0.3633 0.4948 0.9008 27 1 -0.3634 0.5327 -0.8789 28 1 -0.3633 -1.0274 -0.0219 29 1 3.5900 1.7407 -0.0219 30 1 2.1240 2.2743 -0.8788 31 1 2.1596 2.2613 0.9007 32 1 1.9547 -0.5942 2.3932 33 1 3.5666 -0.7158 1.6355 34 1 2.6484 -2.9807 2.1139 35 1 1.2077 -2.6030 1.1403 36 1 4.0082 -2.3986 -0.0001 37 1 2.5153 -4.8490 0.4946 38 1 4.4261 -6.7425 0.3339 39 1 3.3825 -6.8373 -1.1049 40 1 4.0362 -8.6808 -0.3420 41 1 4.5150 -11.0870 -0.5432 42 1 6.4315 -11.8544 -1.8828 43 1 8.1199 -9.9537 -4.2777 44 1 9.5503 -10.2154 -1.7648 45 1 7.3883 -7.8122 -2.8467 46 1 1.2078 -2.6030 -1.1403 47 1 2.6488 -2.9806 -2.1139 48 1 1.9547 -0.5941 -2.3933 49 1 3.5664 -0.7157 -1.6356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:18:19 Heat of formation + Delta-G solvation = -123.870916 kcal Electronic energy + Delta-G solvation = -26483.334014 eV Core-core repulsion = 22726.881223 eV Total energy + Delta-G solvation = -3756.452791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61414 -40.77978 -39.11943 -37.84728 -37.20192 -34.14503 -32.49209 -32.01476 -31.66409 -29.59753 -29.04224 -28.33139 -26.90667 -26.13946 -23.72300 -23.51225 -22.63885 -21.56832 -21.37822 -19.33988 -18.51901 -17.91931 -17.45586 -17.32812 -17.11569 -16.73968 -16.20254 -16.08740 -15.66963 -15.53388 -15.01849 -14.99003 -14.95398 -14.42602 -14.06097 -14.03629 -13.90903 -13.75077 -13.49371 -13.36000 -13.30115 -13.15346 -13.06744 -13.01701 -12.92742 -12.60509 -12.51192 -12.20309 -12.14756 -12.07451 -11.96558 -11.75401 -11.54940 -11.04651 -10.72349 -10.47426 -10.42185 -10.32067 -10.02845 -9.95038 -9.31296 0.18406 0.35627 1.14510 1.42833 1.47238 1.48651 1.54507 1.84720 1.91891 1.97629 2.04829 2.58660 2.64470 2.69487 3.49488 3.54566 3.68226 3.76077 3.83619 3.97534 4.00532 4.07254 4.09917 4.19959 4.20887 4.35786 4.38190 4.53480 4.54032 4.64642 4.66148 4.79311 4.81405 4.83990 4.86091 4.89107 4.91586 4.96314 5.16101 5.21443 5.23923 5.26578 5.33026 5.35519 5.41403 5.47570 5.50554 5.59988 5.66651 5.70801 6.26317 6.47678 6.67845 7.13615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.062 2.938 3 C -0.468 4.468 4 C -0.411 4.411 5 C -0.112 4.112 6 C 0.136 3.864 7 N -0.707 5.707 8 C 0.509 3.491 9 O -0.573 6.573 10 C 0.038 3.962 11 O -0.323 6.323 12 C 0.114 3.886 13 C -0.203 4.203 14 C -0.071 4.071 15 C -0.171 4.171 16 C -0.083 4.083 17 C -0.091 4.091 18 O -0.555 6.555 19 Si 0.997 3.003 20 H -0.253 1.253 21 H -0.278 1.278 22 H -0.244 1.244 23 C -0.145 4.145 24 C -0.116 4.116 25 C -0.426 4.426 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.389 0.611 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.036 0.964 48 H 0.075 0.925 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -3.208 6.066 10.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.253 2.747 3 C -0.574 4.574 4 C -0.497 4.497 5 C -0.149 4.149 6 C 0.032 3.968 7 N -0.361 5.361 8 C 0.295 3.705 9 O -0.452 6.452 10 C -0.040 4.040 11 O -0.236 6.236 12 C 0.069 3.931 13 C -0.221 4.221 14 C -0.089 4.089 15 C -0.188 4.188 16 C -0.084 4.084 17 C -0.201 4.201 18 O -0.362 6.362 19 Si 0.820 3.180 20 H -0.177 1.177 21 H -0.203 1.203 22 H -0.168 1.168 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.509 4.509 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.259 0.741 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.238 0.762 45 H 0.135 0.865 46 H 0.107 0.893 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.979 -3.162 4.929 9.110 hybrid contribution 0.062 0.316 0.274 0.422 sum -6.917 -2.846 5.203 9.112 Atomic orbital electron populations 1.26151 1.20263 1.04947 1.04617 0.78610 0.66521 0.64663 0.64884 1.26321 1.06153 1.20399 1.04496 1.26288 1.06469 1.01446 1.15497 1.21469 1.01501 0.96776 0.95174 1.21107 1.00323 0.79127 0.96257 1.45858 1.30401 1.08259 1.51572 1.20591 0.80921 0.90175 0.78793 1.90764 1.44086 1.66253 1.44053 1.22741 0.90468 0.92060 0.98722 1.86130 1.47759 1.21662 1.68048 1.19229 0.95346 0.82173 0.96369 1.21613 1.02505 0.93698 1.04277 1.21291 0.96058 0.95422 0.96116 1.21246 0.97446 0.99659 1.00492 1.20211 0.97421 0.92569 0.98195 1.25266 0.82804 1.13076 0.98915 1.86502 1.38206 1.76992 1.34501 0.85014 0.79839 0.72066 0.81070 1.17695 1.20338 1.16769 1.20320 0.97742 0.95949 1.02426 1.21564 1.01193 0.96245 0.96458 1.26577 1.05632 1.02136 1.16548 0.90682 0.91523 0.90479 0.91884 0.91530 0.90792 0.88677 0.91076 0.90357 0.88764 0.91905 0.74102 0.85693 0.85764 0.82166 0.82240 0.84499 0.86457 0.76166 0.86506 0.89349 0.94551 0.90577 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.62 8.65 113.37 0.98 3.60 16 2 Si 1.06 -6.16 11.59 68.60 0.80 -5.37 16 3 C -0.47 1.02 8.65 113.37 0.98 2.00 16 4 C -0.41 2.35 4.98 72.22 0.36 2.71 16 5 C -0.11 0.72 5.05 30.68 0.15 0.88 16 6 C 0.14 -0.09 2.03 44.67 0.09 0.00 16 7 N -0.71 2.01 5.05 -444.04 -2.24 -0.23 16 8 C 0.51 2.39 7.66 87.66 0.67 3.06 16 9 O -0.57 -9.68 16.17 16.00 0.26 -9.42 16 10 C 0.04 -0.06 5.22 71.24 0.37 0.32 16 11 O -0.32 -2.66 9.67 -73.38 -0.71 -3.37 16 12 C 0.11 0.61 6.69 22.51 0.15 0.76 16 13 C -0.20 0.29 9.04 22.36 0.20 0.50 16 14 C -0.07 0.18 10.04 22.25 0.22 0.41 16 15 C -0.17 0.03 8.67 22.28 0.19 0.22 16 16 C -0.08 -0.27 5.35 -19.88 -0.11 -0.37 16 17 C -0.09 -0.14 2.80 71.23 0.20 0.06 16 18 O -0.55 -1.98 12.83 -148.98 -1.91 -3.89 16 19 Si 1.00 -1.04 25.14 68.60 1.72 0.69 16 20 H -0.25 0.16 7.11 99.48 0.71 0.86 16 21 H -0.28 -0.77 7.11 99.48 0.71 -0.07 16 22 H -0.24 0.57 7.04 99.48 0.70 1.27 16 23 C -0.15 -1.05 9.62 22.36 0.22 -0.84 16 24 C -0.12 -0.06 5.18 30.67 0.16 0.10 16 25 C -0.43 -0.05 4.98 72.22 0.36 0.31 16 26 H 0.07 -0.47 7.96 -2.38 -0.02 -0.49 16 27 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 28 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 29 H 0.06 -0.04 7.96 -2.38 -0.02 -0.06 16 30 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 31 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 32 H 0.09 -0.74 7.99 -2.39 -0.02 -0.76 16 33 H 0.07 -0.25 7.99 -2.39 -0.02 -0.27 16 34 H 0.08 -0.57 8.13 -2.39 -0.02 -0.59 16 35 H 0.09 -0.99 7.69 -2.39 -0.02 -1.01 16 36 H 0.06 0.35 7.34 -2.39 -0.02 0.33 16 37 H 0.42 -4.75 8.58 -92.71 -0.80 -5.54 16 38 H 0.13 -1.02 7.65 -2.39 -0.02 -1.04 16 39 H 0.12 -1.00 7.68 -2.39 -0.02 -1.02 16 40 H 0.16 -1.37 6.30 -2.91 -0.02 -1.39 16 41 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 42 H 0.14 -0.49 4.86 -2.91 -0.01 -0.50 16 43 H 0.12 0.13 7.96 -2.39 -0.02 0.11 16 44 H 0.39 -1.36 8.70 -74.06 -0.64 -2.00 16 45 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.09 -0.39 7.69 -2.39 -0.02 -0.41 16 47 H 0.04 0.25 7.92 -2.39 -0.02 0.23 16 48 H 0.08 -0.01 7.99 -2.39 -0.02 -0.03 16 49 H 0.06 0.23 7.99 -2.39 -0.02 0.21 16 Total: 0.00 -24.94 392.67 3.38 -21.56 By element: Atomic # 1 Polarization: -13.93 SS G_CDS: 0.26 Total: -13.68 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 5.21 Total: 13.71 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: -2.24 Total: -0.23 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -2.36 Total: -16.68 kcal Atomic # 14 Polarization: -7.20 SS G_CDS: 2.52 Total: -4.68 kcal Total: -24.94 3.38 -21.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.309 kcal (2) G-P(sol) polarization free energy of solvation -24.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds