Wall clock time and date at job start Sun Mar 7 2021 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37641 * 125.67537 * 2 1 4 4 C 1.46670 * 126.22652 * 359.97438 * 3 2 1 5 5 O 1.21700 * 120.00047 * 354.38108 * 4 3 2 6 6 N 1.34782 * 120.00152 * 174.66126 * 4 3 2 7 7 C 1.46497 * 119.99860 * 184.64425 * 6 4 3 8 8 C 1.52519 * 109.04567 * 277.14854 * 7 6 4 9 9 C 1.53716 * 109.64294 * 162.45215 * 8 7 6 10 10 Si 1.87382 * 107.28185 * 59.12684 * 9 8 7 11 11 C 1.86301 * 109.94365 * 195.09599 * 10 9 8 12 12 C 1.86303 * 110.01894 * 73.88456 * 10 9 8 13 13 C 1.87383 * 107.00602 * 314.46756 * 10 9 8 14 14 C 1.52522 * 109.03955 * 154.99772 * 7 6 4 15 15 C 1.37886 * 107.54556 * 179.73637 * 3 2 1 16 16 C 1.39872 * 107.09461 * 0.23607 * 15 3 2 17 17 Br 1.89104 * 126.07324 * 179.97438 * 16 15 3 18 18 C 1.35502 * 107.85302 * 0.02562 * 16 15 3 19 19 C 1.50698 * 125.57065 * 179.97438 * 18 16 15 20 20 O 1.42905 * 109.47257 * 304.52444 * 19 18 16 21 21 Si 1.86302 * 109.47138 * 64.52571 * 19 18 16 22 22 H 1.48501 * 109.46969 * 54.87900 * 21 19 18 23 23 H 1.48504 * 109.47196 * 174.87815 * 21 19 18 24 24 H 1.48496 * 109.47103 * 294.87836 * 21 19 18 25 25 H 1.09001 * 109.47544 * 94.63957 * 1 2 3 26 26 H 1.09000 * 109.47143 * 214.64486 * 1 2 3 27 27 H 1.09004 * 109.47066 * 334.64450 * 1 2 3 28 28 H 0.97003 * 119.99523 * 4.64256 * 6 4 3 29 29 H 1.08999 * 109.03033 * 36.03896 * 7 6 4 30 30 H 1.09002 * 109.44127 * 282.50448 * 8 7 6 31 31 H 1.09003 * 109.44484 * 42.39899 * 8 7 6 32 32 H 1.08995 * 109.89284 * 299.67868 * 9 8 7 33 33 H 1.09005 * 109.88977 * 178.56643 * 9 8 7 34 34 H 1.09006 * 109.47038 * 177.56170 * 11 10 9 35 35 H 1.09000 * 109.46869 * 297.56447 * 11 10 9 36 36 H 1.09004 * 109.47176 * 57.56213 * 11 10 9 37 37 H 1.08996 * 109.46943 * 302.39299 * 12 10 9 38 38 H 1.09003 * 109.46647 * 62.39403 * 12 10 9 39 39 H 1.08995 * 109.46986 * 182.39397 * 12 10 9 40 40 H 1.08993 * 109.89308 * 286.08883 * 13 10 9 41 41 H 1.09002 * 109.95288 * 165.00841 * 13 10 9 42 42 H 1.08994 * 109.44678 * 317.60327 * 14 7 6 43 43 H 1.09002 * 109.44795 * 77.50133 * 14 7 6 44 44 H 1.08010 * 126.45037 * 180.26345 * 15 3 2 45 45 H 1.09001 * 109.46922 * 184.52351 * 19 18 16 46 46 H 0.96702 * 113.99418 * 60.00295 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1181 0.0000 4 6 1.8121 2.5122 -0.0005 5 8 0.6261 2.7648 -0.1042 6 7 2.7073 3.5139 0.1081 7 6 2.2462 4.9006 0.2101 8 6 1.9599 5.4341 -1.1898 9 6 1.0802 6.6910 -1.0939 10 14 2.0164 7.9487 -0.0678 11 6 0.8638 9.3055 0.4812 12 6 3.4166 8.6690 -1.0635 13 6 2.6941 7.0424 1.4257 14 6 3.3119 5.7284 0.9209 15 6 3.5781 0.6891 0.0060 16 6 3.5528 -0.7094 0.0042 17 35 5.0609 -1.8503 0.0097 18 6 2.2558 -1.1015 -0.0034 19 6 1.7713 -2.5285 -0.0083 20 8 2.3472 -3.2232 -1.1164 21 14 2.2786 -3.3620 1.5787 22 1 1.7840 -2.5703 2.7337 23 1 1.6965 -4.7273 1.6288 24 1 3.7596 -3.4528 1.6388 25 1 -0.3634 -0.0831 -1.0243 26 1 -0.3633 -0.8454 0.5842 27 1 -0.3633 0.9287 0.4401 28 1 3.6570 3.3165 0.1189 29 1 1.3266 4.9273 0.7946 30 1 2.8997 5.6856 -1.6814 31 1 1.4405 4.6711 -1.7697 32 1 0.1352 6.4462 -0.6091 33 1 0.8941 7.0904 -2.0909 34 1 1.4059 10.0094 1.1129 35 1 0.4744 9.8273 -0.3930 36 1 0.0368 8.8738 1.0450 37 1 4.0745 7.8670 -1.3982 38 1 3.0139 9.1941 -1.9297 39 1 3.9806 9.3673 -0.4451 40 1 1.8876 6.8278 2.1267 41 1 3.4579 7.6481 1.9134 42 1 3.7055 5.1643 1.7663 43 1 4.1214 5.9517 0.2259 44 1 4.4583 1.3150 0.0117 45 1 0.6849 -2.5430 -0.0952 46 1 3.3138 -3.2501 -1.1044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16807780_5000100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:23:08 Heat of formation + Delta-G solvation = -61.543882 kcal Electronic energy + Delta-G solvation = -26197.465142 eV Core-core repulsion = 22485.379474 eV Total energy + Delta-G solvation = -3712.085669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 388.073 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.89090 -40.68244 -38.08827 -37.73304 -34.81923 -33.92080 -32.09353 -31.99766 -30.99979 -29.18517 -28.32247 -27.66588 -27.39805 -25.83301 -23.55761 -23.24306 -21.64737 -21.34889 -20.49132 -19.05621 -18.32663 -17.39166 -17.24247 -16.72179 -16.16780 -16.04217 -15.83733 -15.47018 -14.99613 -14.97780 -14.68131 -14.41358 -14.27948 -14.00361 -13.89814 -13.88710 -13.72388 -13.35512 -13.29298 -13.23846 -13.14574 -13.03384 -12.92313 -12.79361 -12.70688 -12.49518 -12.25823 -12.12737 -11.78515 -11.74132 -11.26314 -10.91919 -10.80039 -10.71219 -10.41160 -10.33549 -10.02612 -9.83232 -9.30033 0.12119 0.49732 0.82340 1.13997 1.40326 1.45180 1.56713 1.86704 1.90208 1.98992 2.04708 2.13963 2.28355 2.70446 3.15983 3.42183 3.54375 3.68947 3.78369 3.87498 4.06461 4.19209 4.22050 4.31622 4.38640 4.40130 4.55041 4.59838 4.60590 4.70609 4.81676 4.82939 4.85702 4.87122 4.89264 4.91705 5.18873 5.23742 5.26728 5.29179 5.37218 5.49632 5.51688 5.56664 5.62147 5.71262 5.78084 6.30321 6.41654 7.05728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.394 5.394 3 C -0.054 4.054 4 C 0.588 3.412 5 O -0.574 6.574 6 N -0.702 5.702 7 C 0.141 3.859 8 C -0.116 4.116 9 C -0.421 4.421 10 Si 1.060 2.940 11 C -0.466 4.466 12 C -0.455 4.455 13 C -0.409 4.409 14 C -0.114 4.114 15 C -0.098 4.098 16 C -0.193 4.193 17 Br -0.012 7.012 18 C 0.050 3.950 19 C -0.068 4.068 20 O -0.539 6.539 21 Si 0.953 3.047 22 H -0.258 1.258 23 H -0.246 1.246 24 H -0.216 1.216 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.416 0.584 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.182 0.818 45 H 0.136 0.864 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 2.113 1.899 4.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.068 5.068 3 C -0.168 4.168 4 C 0.376 3.624 5 O -0.456 6.456 6 N -0.353 5.353 7 C 0.037 3.963 8 C -0.154 4.154 9 C -0.505 4.505 10 Si 1.252 2.748 11 C -0.572 4.572 12 C -0.563 4.563 13 C -0.495 4.495 14 C -0.152 4.152 15 C -0.125 4.125 16 C -0.278 4.278 17 Br 0.072 6.928 18 C -0.072 4.072 19 C -0.177 4.177 20 O -0.347 6.347 21 Si 0.771 3.229 22 H -0.182 1.182 23 H -0.170 1.170 24 H -0.138 1.138 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.118 0.882 28 H 0.254 0.746 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.199 0.801 45 H 0.154 0.846 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.976 1.436 2.434 3.448 hybrid contribution 0.020 0.407 -0.551 0.685 sum 1.995 1.844 1.883 3.306 Atomic orbital electron populations 1.22578 0.74270 1.06558 1.05216 1.43949 1.07814 1.03926 1.51074 1.20174 0.90365 0.87807 1.18502 1.17003 0.85562 0.83762 0.76047 1.90796 1.17681 1.85113 1.51988 1.45740 1.10222 1.05840 1.73469 1.21134 0.98969 0.79281 0.96896 1.21558 1.00578 0.97315 0.95996 1.26522 1.05804 1.07965 1.10169 0.78630 0.65686 0.64739 0.65782 1.26301 1.11137 1.13919 1.05870 1.26192 1.13827 1.07123 1.09128 1.26286 1.06421 1.02978 1.13837 1.21484 0.97177 0.95816 1.00726 1.21497 0.95568 0.92844 1.02565 1.20864 0.91205 0.95209 1.20527 1.96646 1.36119 1.61952 1.98085 1.21106 0.89773 0.90487 1.05820 1.24895 1.03652 0.86887 1.02309 1.86530 1.26702 1.75437 1.46017 0.85577 0.84156 0.79856 0.73334 1.18219 1.16961 1.13769 0.89390 0.87023 0.88223 0.74648 0.91068 0.89907 0.94234 0.91754 0.90602 0.90904 0.91527 0.91645 0.90692 0.91548 0.90808 0.90740 0.88851 0.90504 0.89102 0.80094 0.84624 0.76843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.02 10.15 127.77 1.30 1.32 16 2 N -0.39 -1.54 3.16 -519.62 -1.64 -3.19 16 3 C -0.05 -0.22 6.88 40.35 0.28 0.05 16 4 C 0.59 3.21 7.53 86.44 0.65 3.86 16 5 O -0.57 -6.81 14.10 -4.35 -0.06 -6.87 16 6 N -0.70 0.57 5.03 -448.02 -2.25 -1.68 16 7 C 0.14 -0.13 2.01 44.67 0.09 -0.04 16 8 C -0.12 -0.02 5.15 30.68 0.16 0.14 16 9 C -0.42 0.45 4.98 72.22 0.36 0.81 16 10 Si 1.06 -6.61 11.60 68.60 0.80 -5.82 16 11 C -0.47 1.40 8.65 113.37 0.98 2.38 16 12 C -0.46 2.44 8.65 113.37 0.98 3.42 16 13 C -0.41 2.46 4.98 72.22 0.36 2.82 16 14 C -0.11 0.68 5.05 30.68 0.15 0.83 16 15 C -0.10 -0.08 10.34 22.58 0.23 0.15 16 16 C -0.19 -0.50 6.08 22.03 0.13 -0.37 16 17 Br -0.01 -0.01 28.87 -20.37 -0.59 -0.60 16 18 C 0.05 0.16 5.32 41.34 0.22 0.38 16 19 C -0.07 -0.04 2.80 71.24 0.20 0.16 16 20 O -0.54 -1.75 12.88 -148.98 -1.92 -3.67 16 21 Si 0.95 -0.18 26.76 68.60 1.84 1.65 16 22 H -0.26 -0.44 7.11 99.48 0.71 0.27 16 23 H -0.25 -0.24 7.11 99.48 0.71 0.47 16 24 H -0.22 0.09 5.74 99.48 0.57 0.66 16 25 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.11 -0.60 7.30 -2.39 -0.02 -0.62 16 27 H 0.10 0.34 6.19 -2.39 -0.01 0.33 16 28 H 0.42 -2.77 7.48 -92.71 -0.69 -3.47 16 29 H 0.07 0.24 7.42 -2.39 -0.02 0.22 16 30 H 0.08 -0.30 7.69 -2.39 -0.02 -0.31 16 31 H 0.04 0.24 7.69 -2.39 -0.02 0.23 16 32 H 0.06 0.10 7.99 -2.39 -0.02 0.08 16 33 H 0.08 -0.08 7.99 -2.38 -0.02 -0.10 16 34 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 35 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.06 -0.13 7.96 -2.38 -0.02 -0.15 16 37 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 40 H 0.07 -0.34 7.99 -2.39 -0.02 -0.36 16 41 H 0.09 -0.72 7.99 -2.39 -0.02 -0.74 16 42 H 0.08 -0.48 8.13 -2.39 -0.02 -0.50 16 43 H 0.09 -0.84 7.69 -2.39 -0.02 -0.86 16 44 H 0.18 -1.00 7.45 -2.91 -0.02 -1.02 16 45 H 0.14 -0.43 6.67 -2.39 -0.02 -0.44 16 46 H 0.38 0.19 6.17 -74.06 -0.46 -0.26 16 Total: 0.00 -15.28 378.68 2.72 -12.55 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: 0.46 Total: -8.30 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.10 Total: 15.92 kcal Atomic # 7 Polarization: -0.97 SS G_CDS: -3.90 Total: -4.87 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.98 Total: -10.54 kcal Atomic # 14 Polarization: -6.79 SS G_CDS: 2.63 Total: -4.16 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.59 Total: -0.60 kcal Total: -15.28 2.72 -12.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_5000100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.992 kcal (2) G-P(sol) polarization free energy of solvation -15.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds