Wall clock time and date at job start Sun Mar 7 2021 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86308 * 1 3 3 C 1.86296 * 110.00315 * 2 1 4 4 C 1.87376 * 109.94395 * 121.22277 * 2 1 3 5 5 C 1.53715 * 107.28451 * 164.90400 * 4 2 1 6 6 C 1.52523 * 109.64041 * 300.87210 * 5 4 2 7 7 N 1.46499 * 109.04541 * 197.55226 * 6 5 4 8 8 C 1.34777 * 120.00199 * 155.00215 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 N 1.46491 * 109.46957 * 179.72354 * 10 8 7 12 12 C 1.36837 * 125.06218 * 265.02370 * 11 10 8 13 13 C 1.34236 * 109.93878 * 179.97438 * 12 11 10 14 14 C 1.50701 * 126.50124 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.47168 * 104.97293 * 14 13 12 16 16 Si 1.86306 * 109.46996 * 344.97511 * 14 13 12 17 17 H 1.48500 * 109.46895 * 59.99992 * 16 14 13 18 18 H 1.48497 * 109.47171 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46978 * 300.00156 * 16 14 13 20 20 C 1.46491 * 107.00070 * 359.97438 * 13 12 11 21 21 C 1.39590 * 134.03844 * 180.02562 * 20 13 12 22 22 C 1.36663 * 119.76365 * 179.97438 * 21 20 13 23 23 C 1.38792 * 120.53125 * 359.97438 * 22 21 20 24 24 C 1.37792 * 120.65995 * 0.02562 * 23 22 21 25 25 C 1.37689 * 125.06676 * 84.71591 * 11 10 8 26 26 C 1.52526 * 111.65510 * 76.98597 * 6 5 4 27 27 C 1.53710 * 109.64247 * 283.01051 * 26 6 5 28 28 H 1.08998 * 109.47113 * 298.78293 * 1 2 3 29 29 H 1.08999 * 109.46468 * 58.77874 * 1 2 3 30 30 H 1.08995 * 109.47040 * 178.78118 * 1 2 3 31 31 H 1.08994 * 109.47129 * 181.21778 * 3 2 1 32 32 H 1.08999 * 109.47217 * 301.21921 * 3 2 1 33 33 H 1.09002 * 109.46842 * 61.22092 * 3 2 1 34 34 H 1.08997 * 109.90024 * 45.45487 * 4 2 1 35 35 H 1.09011 * 109.89441 * 284.34608 * 4 2 1 36 36 H 1.08999 * 109.44436 * 180.82188 * 5 4 2 37 37 H 1.08996 * 109.44081 * 60.92193 * 5 4 2 38 38 H 1.09005 * 109.04615 * 316.50359 * 6 5 4 39 39 H 0.97000 * 119.99484 * 334.99312 * 7 6 5 40 40 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 41 41 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 42 42 H 1.07997 * 125.03075 * 359.96169 * 12 11 10 43 43 H 1.08998 * 109.47031 * 224.97783 * 14 13 12 44 44 H 0.96697 * 114.00051 * 300.00309 * 15 14 13 45 45 H 1.07997 * 120.12048 * 0.02562 * 21 20 13 46 46 H 1.07999 * 119.73669 * 180.02562 * 22 21 20 47 47 H 1.07997 * 119.66705 * 180.02562 * 23 22 21 48 48 H 1.07998 * 120.10843 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.43979 * 43.06508 * 26 6 5 50 50 H 1.09003 * 109.44103 * 162.95712 * 26 6 5 51 51 H 1.08993 * 109.89681 * 299.68206 * 27 26 6 52 52 H 1.09001 * 109.89231 * 178.57047 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5003 1.7506 0.0000 4 6 2.5022 -0.9130 1.5063 5 6 3.9901 -1.2119 1.2619 6 6 4.1432 -2.0548 0.0000 7 7 5.4684 -2.6792 0.0000 8 6 5.6760 -3.8198 -0.6874 9 8 4.7655 -4.3295 -1.3056 10 6 7.0378 -4.4654 -0.6823 11 7 7.0024 -5.6861 -1.4913 12 6 6.7940 -6.9472 -1.0027 13 6 6.8214 -7.8375 -2.0070 14 6 6.6340 -9.3281 -1.8888 15 8 5.3333 -9.6836 -2.3618 16 14 6.8062 -9.8361 -0.1046 17 1 5.7765 -9.1416 0.7094 18 1 6.6221 -11.3051 0.0118 19 1 8.1579 -9.4666 0.3870 20 6 7.0668 -7.0852 -3.2398 21 6 7.1989 -7.4403 -4.5832 22 6 7.4305 -6.4735 -5.5209 23 6 7.5350 -5.1406 -5.1484 24 6 7.4078 -4.7680 -3.8280 25 6 7.1679 -5.7349 -2.8573 26 6 3.9901 -1.2118 -1.2619 27 6 2.5022 -0.9130 -1.5063 28 1 -0.3633 0.4948 0.9007 29 1 -0.3632 0.5327 -0.8789 30 1 -0.3633 -1.0274 -0.0219 31 1 3.5900 1.7405 -0.0218 32 1 2.1241 2.2742 -0.8788 33 1 2.1597 2.2612 0.9008 34 1 1.9530 -1.8456 1.6356 35 1 2.3900 -0.2895 2.3933 36 1 4.3953 -1.7576 2.1140 37 1 4.5332 -0.2747 1.1403 38 1 3.3825 -2.8355 -0.0008 39 1 6.1965 -2.2716 0.4946 40 1 7.7693 -3.7737 -1.1000 41 1 7.3173 -4.7156 0.3410 42 1 6.6318 -7.1902 0.0370 43 1 7.3898 -9.8378 -2.4862 44 1 4.6099 -9.2656 -1.8750 45 1 7.1176 -8.4753 -4.8807 46 1 7.5323 -6.7487 -6.5603 47 1 7.7177 -4.3880 -5.9011 48 1 7.4910 -3.7283 -3.5480 49 1 4.5332 -0.2747 -1.1403 50 1 4.3953 -1.7575 -2.1141 51 1 1.9530 -1.8455 -1.6356 52 1 2.3900 -0.2894 -2.3933 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16807780_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:32:29 Heat of formation + Delta-G solvation = -51.507097 kcal Electronic energy + Delta-G solvation = -30433.793168 eV Core-core repulsion = 26521.744689 eV Total energy + Delta-G solvation = -3912.048479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.45972 -40.85896 -38.19002 -37.88522 -37.35817 -34.33624 -33.72028 -32.17252 -31.32498 -30.11060 -29.44235 -28.97266 -28.53405 -26.71506 -25.39636 -23.65743 -23.58345 -22.60077 -21.62504 -21.54077 -20.55256 -18.61065 -18.40825 -17.78633 -17.37281 -16.89811 -16.44368 -16.32653 -16.06126 -15.94555 -15.60439 -15.35311 -15.18453 -14.69673 -14.61185 -14.46060 -14.34423 -14.18504 -14.08021 -13.94099 -13.64799 -13.51825 -13.45969 -13.35320 -13.31038 -13.18204 -13.08680 -12.63495 -12.57885 -12.42061 -12.28833 -12.26741 -12.08662 -11.89891 -11.81855 -11.58656 -11.08713 -10.90595 -10.60319 -10.39564 -10.38066 -10.18641 -10.10385 -8.99825 -8.50249 0.30061 0.82568 1.24767 1.42575 1.44564 1.48053 1.58113 1.64077 1.74612 1.76345 1.80261 1.97850 2.16542 2.51543 3.14494 3.47501 3.50860 3.63715 3.68482 3.77482 3.83447 3.87359 3.93945 4.07398 4.11577 4.24804 4.33883 4.37938 4.39851 4.51123 4.62082 4.63752 4.64480 4.67418 4.69326 4.70190 4.74993 4.76820 4.83077 4.93005 4.97048 5.01871 5.09473 5.17087 5.22300 5.28394 5.33116 5.37942 5.47317 5.49795 5.67212 5.83549 5.89178 5.92805 6.19509 6.35169 6.40323 6.76962 7.06200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 0.991 3.009 3 C -0.445 4.445 4 C -0.403 4.403 5 C -0.115 4.115 6 C 0.137 3.863 7 N -0.727 5.727 8 C 0.490 3.510 9 O -0.511 6.511 10 C 0.090 3.910 11 N -0.465 5.465 12 C 0.059 3.941 13 C -0.196 4.196 14 C -0.042 4.042 15 O -0.540 6.540 16 Si 0.945 3.055 17 H -0.254 1.254 18 H -0.251 1.251 19 H -0.250 1.250 20 C -0.085 4.085 21 C -0.064 4.064 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.128 4.128 25 C 0.110 3.890 26 C -0.116 4.116 27 C -0.404 4.404 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.400 0.600 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.165 0.835 43 H 0.113 0.887 44 H 0.375 0.625 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.114 0.886 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 4.761 4.476 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.187 2.813 3 C -0.553 4.553 4 C -0.489 4.489 5 C -0.153 4.153 6 C 0.033 3.967 7 N -0.379 5.379 8 C 0.273 3.727 9 O -0.385 6.385 10 C -0.036 4.036 11 N -0.148 5.148 12 C -0.065 4.065 13 C -0.204 4.204 14 C -0.154 4.154 15 O -0.345 6.345 16 Si 0.767 3.233 17 H -0.178 1.178 18 H -0.174 1.174 19 H -0.174 1.174 20 C -0.089 4.089 21 C -0.082 4.082 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.149 4.149 25 C 0.005 3.995 26 C -0.154 4.154 27 C -0.490 4.490 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.235 0.765 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.182 0.818 43 H 0.131 0.869 44 H 0.221 0.779 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.132 0.868 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.976 4.023 4.681 6.481 hybrid contribution 0.005 0.927 0.258 0.962 sum 1.980 4.950 4.939 7.268 Atomic orbital electron populations 1.26071 1.20434 1.04582 1.04482 0.79669 0.67175 0.67336 0.67132 1.26083 1.06234 1.18452 1.04517 1.26207 0.99354 1.08551 1.14793 1.21452 0.97540 0.99861 0.96437 1.21081 0.84530 0.95959 0.95107 1.46125 1.13666 1.25666 1.52469 1.20992 0.90827 0.81150 0.79686 1.90813 1.43873 1.62519 1.41304 1.21607 0.96259 0.87284 0.98463 1.43190 1.61694 1.05015 1.04947 1.21540 1.03456 0.82789 0.98748 1.20631 1.12553 0.95399 0.91789 1.24251 0.88159 0.91498 1.11470 1.86501 1.14243 1.71619 1.62116 0.85835 0.81260 0.81369 0.74809 1.17804 1.17404 1.17382 1.18913 1.05284 0.91407 0.93300 1.20315 0.97640 0.99723 0.90572 1.20672 1.03544 0.92831 0.99492 1.20821 0.99597 0.96415 0.94727 1.19945 1.05932 0.97170 0.91822 1.18167 1.03133 0.95474 0.82712 1.21545 0.96890 0.99553 0.97415 1.26242 0.99857 1.08389 1.14494 0.91205 0.91154 0.91133 0.91281 0.91161 0.91198 0.90285 0.90051 0.91168 0.91074 0.89209 0.76539 0.86448 0.86083 0.81804 0.86876 0.77851 0.85781 0.85924 0.85776 0.86822 0.91686 0.91531 0.90354 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.66 8.65 101.05 0.87 1.54 16 2 Si 0.99 -2.91 11.59 -169.99 -1.97 -4.88 16 3 C -0.45 0.99 8.65 101.05 0.87 1.86 16 4 C -0.40 1.06 4.98 37.53 0.19 1.24 16 5 C -0.12 0.33 5.05 -26.60 -0.13 0.19 16 6 C 0.14 -0.15 2.03 -68.42 -0.14 -0.29 16 7 N -0.73 1.56 5.05 -54.28 -0.27 1.28 16 8 C 0.49 0.26 7.65 -10.98 -0.08 0.18 16 9 O -0.51 -2.82 16.09 5.55 0.09 -2.73 16 10 C 0.09 -0.17 6.48 -5.20 -0.03 -0.20 16 11 N -0.47 -0.87 2.27 -115.72 -0.26 -1.13 16 12 C 0.06 0.10 9.89 -16.73 -0.17 -0.06 16 13 C -0.20 -0.56 5.57 -102.71 -0.57 -1.13 16 14 C -0.04 -0.06 3.06 36.01 0.11 0.05 16 15 O -0.54 -1.36 12.88 -35.23 -0.45 -1.81 16 16 Si 0.94 0.04 26.08 -169.99 -4.43 -4.39 16 17 H -0.25 0.02 7.03 56.52 0.40 0.41 16 18 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 19 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 20 C -0.08 -0.38 6.35 -105.14 -0.67 -1.05 16 21 C -0.06 -0.24 10.05 -39.65 -0.40 -0.64 16 22 C -0.15 -0.41 9.97 -39.95 -0.40 -0.81 16 23 C -0.10 -0.24 10.01 -39.54 -0.40 -0.64 16 24 C -0.13 -0.38 10.00 -39.43 -0.39 -0.77 16 25 C 0.11 0.42 6.80 -83.99 -0.57 -0.15 16 26 C -0.12 0.07 5.18 -26.60 -0.14 -0.07 16 27 C -0.40 0.37 4.98 37.53 0.19 0.55 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 34 H 0.08 -0.16 7.99 -51.93 -0.41 -0.58 16 35 H 0.08 -0.24 7.99 -51.92 -0.41 -0.66 16 36 H 0.07 -0.21 8.13 -51.93 -0.42 -0.63 16 37 H 0.07 -0.28 7.69 -51.93 -0.40 -0.68 16 38 H 0.09 0.10 7.34 -51.93 -0.38 -0.28 16 39 H 0.40 -2.14 8.58 -40.82 -0.35 -2.49 16 40 H 0.12 -0.47 8.14 -51.93 -0.42 -0.89 16 41 H 0.12 -0.61 8.12 -51.93 -0.42 -1.03 16 42 H 0.16 -0.16 6.29 -52.49 -0.33 -0.49 16 43 H 0.11 0.08 7.96 -51.93 -0.41 -0.33 16 44 H 0.37 -0.08 8.70 45.56 0.40 0.32 16 45 H 0.12 0.33 8.06 -52.49 -0.42 -0.09 16 46 H 0.12 0.10 8.06 -52.49 -0.42 -0.32 16 47 H 0.12 0.04 8.06 -52.49 -0.42 -0.39 16 48 H 0.11 0.12 8.06 -52.49 -0.42 -0.30 16 49 H 0.06 -0.13 7.69 -51.93 -0.40 -0.53 16 50 H 0.07 0.13 7.92 -51.93 -0.41 -0.29 16 51 H 0.08 0.02 7.99 -51.93 -0.41 -0.40 16 52 H 0.08 -0.07 7.99 -51.93 -0.41 -0.49 16 LS Contribution 419.11 15.07 6.32 6.32 Total: 0.00 -9.49 419.11 -11.04 -20.53 By element: Atomic # 1 Polarization: -4.79 SS G_CDS: -8.19 Total: -12.98 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.86 Total: -0.19 kcal Atomic # 7 Polarization: 0.68 SS G_CDS: -0.54 Total: 0.15 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.36 Total: -4.55 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: -6.40 Total: -9.27 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -9.49 -11.04 -20.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16807780_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.982 kcal (2) G-P(sol) polarization free energy of solvation -9.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds