Wall clock time and date at job start Sun Mar 7 2021 10:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99948 * 2 1 4 4 O 1.20830 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00117 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47135 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.47315 * 54.99648 * 6 5 3 8 8 C 1.53005 * 109.47289 * 174.99720 * 6 5 3 9 9 C 1.52999 * 109.47100 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47317 * 300.00005 * 9 8 6 11 11 H 1.09004 * 109.47145 * 300.00142 * 10 9 8 12 12 C 1.52999 * 109.46942 * 180.02562 * 10 9 8 13 13 N 1.46500 * 109.47120 * 175.00101 * 12 10 9 14 14 C 1.34771 * 120.00252 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00056 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47030 * 180.02562 * 16 14 13 18 18 C 1.34855 * 125.88781 * 274.99714 * 17 16 14 19 19 C 1.40891 * 107.41598 * 180.02562 * 18 17 16 20 20 C 1.34854 * 107.41757 * 0.02562 * 19 18 17 21 21 C 1.50706 * 125.88900 * 180.02562 * 20 19 18 22 22 O 1.42899 * 109.46918 * 119.97621 * 21 20 19 23 23 Si 1.86300 * 109.46985 * 359.97438 * 21 20 19 24 24 N 1.36335 * 108.22050 * 359.97438 * 20 19 18 25 25 C 1.53002 * 109.47214 * 60.00282 * 10 9 8 26 26 C 1.53001 * 109.46942 * 294.99612 * 6 5 3 27 27 H 1.08998 * 109.47282 * 300.00000 * 1 2 3 28 28 H 1.09004 * 109.47000 * 59.99933 * 1 2 3 29 29 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47536 * 59.99916 * 5 3 2 31 31 H 1.09005 * 109.46865 * 299.99748 * 5 3 2 32 32 H 1.09004 * 109.47001 * 59.99736 * 8 6 5 33 33 H 1.08993 * 109.46862 * 299.99883 * 8 6 5 34 34 H 1.09004 * 109.46558 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.47129 * 60.00157 * 9 8 6 36 36 H 1.09000 * 109.46917 * 55.00288 * 12 10 9 37 37 H 1.08994 * 109.47267 * 294.99891 * 12 10 9 38 38 H 0.97004 * 120.00018 * 359.97438 * 13 12 10 39 39 H 1.08992 * 109.47358 * 59.99934 * 16 14 13 40 40 H 1.09007 * 109.47321 * 299.99775 * 16 14 13 41 41 H 1.08003 * 126.29002 * 0.03575 * 18 17 16 42 42 H 1.07999 * 126.29269 * 180.26121 * 19 18 17 43 43 H 1.09001 * 109.46750 * 239.97295 * 21 20 19 44 44 H 0.96706 * 113.99572 * 300.00250 * 22 21 20 45 45 H 1.48498 * 110.00375 * 58.68115 * 23 21 20 46 46 H 1.48497 * 109.99760 * 179.97438 * 23 21 20 47 47 H 0.96994 * 125.64064 * 179.97438 * 24 20 19 48 48 H 1.08992 * 109.47131 * 59.99428 * 25 10 9 49 49 H 1.08993 * 109.47036 * 179.97438 * 25 10 9 50 50 H 1.09001 * 109.47388 * 299.99682 * 26 6 5 51 51 H 1.08996 * 109.47465 * 60.00172 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 1 3.5381 3.2572 0.8425 8 6 5.5228 2.8238 0.1254 9 6 5.9565 4.2910 0.1255 10 6 5.5161 4.9532 -1.1815 11 1 5.9780 4.4378 -2.0237 12 6 5.9505 6.4202 -1.1816 13 7 5.6354 7.0227 -2.4793 14 6 5.9312 8.3170 -2.7109 15 8 6.4585 8.9829 -1.8452 16 6 5.6076 8.9366 -4.0460 17 6 6.0365 10.3813 -4.0465 18 6 5.3124 11.4210 -3.5847 19 6 6.0802 12.5870 -3.7744 20 6 7.2440 12.2154 -4.3455 21 6 8.3734 13.1365 -4.7293 22 8 9.5563 12.7603 -4.0213 23 14 7.9199 14.8901 -4.2937 24 7 7.2230 10.8628 -4.5148 25 6 3.9934 4.8716 -1.3067 26 6 3.5595 3.4048 -1.3066 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9563 0.7806 0.8892 32 1 5.9847 2.3087 -0.7169 33 1 5.8366 2.3517 1.0563 34 1 7.0413 4.3491 0.2152 35 1 5.4946 4.8064 0.9676 36 1 7.0241 6.4812 -1.0038 37 1 5.4207 6.9561 -0.3941 38 1 5.2146 6.4899 -3.1721 39 1 4.5340 8.8759 -4.2242 40 1 6.1375 8.4005 -4.8335 41 1 4.3254 11.3693 -3.1492 42 1 5.7915 13.5929 -3.5077 43 1 8.5533 13.0634 -5.8019 44 1 9.4686 12.8018 -3.0591 45 1 7.6411 14.9963 -2.8390 46 1 9.0259 15.8083 -4.6666 47 1 7.9344 10.3309 -4.9045 48 1 3.5315 5.3869 -0.4647 49 1 3.6796 5.3438 -2.2376 50 1 4.0215 2.8899 -2.1489 51 1 2.4748 3.3467 -1.3959 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16902906_14644196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:20:28 Heat of formation + Delta-G solvation = -131.785090 kcal Electronic energy + Delta-G solvation = -30493.231600 eV Core-core repulsion = 26165.921387 eV Total energy + Delta-G solvation = -4327.310213 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.192 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.33974 -41.67024 -40.73598 -39.63391 -37.88028 -37.59170 -36.12481 -33.85886 -32.98203 -31.93260 -31.66506 -30.33782 -29.31485 -28.09112 -25.91133 -24.83909 -23.74440 -22.52419 -21.83610 -21.38434 -21.32157 -20.99069 -20.65039 -19.05861 -18.57973 -18.12923 -17.61887 -17.47602 -17.35474 -16.71313 -16.53498 -16.36355 -16.06926 -15.43808 -15.33339 -15.14825 -15.00881 -14.85972 -14.60315 -14.46369 -14.32407 -14.11844 -14.08368 -13.88162 -13.81972 -13.41786 -13.39458 -13.05053 -12.93728 -12.80082 -12.65379 -12.51925 -12.21103 -12.02525 -11.87944 -11.87539 -11.77988 -11.64845 -11.42184 -11.17938 -10.93482 -10.84175 -10.81800 -10.11308 -9.80502 -8.97311 -4.88972 1.07202 1.18240 1.30631 1.61559 1.66801 1.79847 1.85184 1.93228 2.32594 2.51169 3.35765 3.53626 3.66780 3.68307 3.74595 3.80105 3.85791 3.97937 4.03983 4.16617 4.19996 4.24717 4.28572 4.31158 4.42927 4.46912 4.50446 4.51743 4.53418 4.61547 4.62033 4.65279 4.67666 4.69019 4.78700 4.79582 4.84359 4.98231 5.11715 5.17696 5.24456 5.24931 5.26030 5.28005 5.32736 5.39526 5.43607 5.54541 5.60297 5.97357 6.12199 6.36633 6.51731 6.67061 6.73333 7.25141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.454 3.546 4 O -0.536 6.536 5 C -0.108 4.108 6 C -0.075 4.075 7 H 0.059 0.941 8 C -0.106 4.106 9 C -0.114 4.114 10 C -0.085 4.085 11 H 0.095 0.905 12 C 0.126 3.874 13 N -0.716 5.716 14 C 0.508 3.492 15 O -0.582 6.582 16 C -0.067 4.067 17 C 0.033 3.967 18 C -0.201 4.201 19 C -0.202 4.202 20 C -0.018 4.018 21 C -0.062 4.062 22 O -0.554 6.554 23 Si 0.798 3.202 24 N -0.536 5.536 25 C -0.109 4.109 26 C -0.119 4.119 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.417 0.583 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.385 0.615 45 H -0.293 1.293 46 H -0.295 1.295 47 H 0.419 0.581 48 H 0.046 0.954 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 -7.167 -4.509 8.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.299 3.701 4 O -0.426 6.426 5 C -0.145 4.145 6 C -0.094 4.094 7 H 0.078 0.922 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.104 4.104 11 H 0.113 0.887 12 C 0.002 3.998 13 N -0.369 5.369 14 C 0.295 3.705 15 O -0.461 6.461 16 C -0.107 4.107 17 C -0.081 4.081 18 C -0.226 4.226 19 C -0.227 4.227 20 C -0.132 4.132 21 C -0.170 4.170 22 O -0.362 6.362 23 Si 0.702 3.298 24 N -0.132 5.132 25 C -0.146 4.146 26 C -0.156 4.156 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.254 0.746 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.234 0.766 45 H -0.220 1.220 46 H -0.223 1.223 47 H 0.257 0.743 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.330 -5.904 -4.092 7.305 hybrid contribution 0.253 -0.833 0.880 1.238 sum -1.077 -6.736 -3.211 7.540 Atomic orbital electron populations 1.23464 0.75329 1.05390 1.02269 1.86517 1.24596 1.33668 1.83834 1.24533 0.93534 0.80828 0.71159 1.90655 1.68257 1.37140 1.46534 1.21643 0.85176 0.99842 1.07831 1.21006 0.96678 0.92831 0.98860 0.92218 1.21524 0.93143 0.96180 1.03494 1.21502 1.01308 0.95914 0.96461 1.21344 0.96141 0.92939 0.99986 0.88715 1.21345 0.99839 0.93682 0.84939 1.45910 1.62922 1.11000 1.17111 1.21078 0.77542 0.81887 0.90028 1.90751 1.44332 1.62691 1.48343 1.20255 1.06290 0.89248 0.94893 1.19923 0.87600 0.95229 1.05326 1.20846 1.01752 0.92190 1.07765 1.20904 0.95038 0.99612 1.07111 1.20921 0.99012 0.84295 1.08964 1.25008 0.83461 1.07621 1.00909 1.86531 1.35768 1.89734 1.24138 0.93440 0.84300 0.71198 0.80836 1.41868 1.15471 1.07018 1.48796 1.21519 0.94630 0.96583 1.01884 1.21679 1.01059 0.95660 0.97233 0.92332 0.92106 0.85581 0.85403 0.85736 0.89984 0.90620 0.90888 0.92605 0.92588 0.93386 0.74569 0.83900 0.85208 0.84292 0.83176 0.85386 0.76562 1.22024 1.22254 0.74338 0.93483 0.91045 0.90617 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.66 10.57 -51.42 -0.54 -1.20 16 3 C 0.45 0.98 7.68 71.23 0.55 1.53 16 4 O -0.54 -4.52 13.71 21.95 0.30 -4.22 16 5 C -0.11 0.57 5.29 29.85 0.16 0.73 16 6 C -0.08 0.28 1.84 -10.79 -0.02 0.26 16 7 H 0.06 0.05 7.96 -2.38 -0.02 0.04 16 8 C -0.11 0.74 5.20 30.60 0.16 0.90 16 9 C -0.11 0.55 5.20 30.59 0.16 0.71 16 10 C -0.09 0.46 2.22 -10.79 -0.02 0.43 16 11 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 12 C 0.13 -0.08 5.07 86.38 0.44 0.36 16 13 N -0.72 2.13 5.28 -463.07 -2.45 -0.32 16 14 C 0.51 1.42 7.82 87.66 0.69 2.11 16 15 O -0.58 -8.22 16.03 -3.04 -0.05 -8.27 16 16 C -0.07 0.25 6.24 29.10 0.18 0.43 16 17 C 0.03 0.12 5.66 41.08 0.23 0.35 16 18 C -0.20 -1.25 10.77 22.14 0.24 -1.01 16 19 C -0.20 -1.12 9.37 22.14 0.21 -0.91 16 20 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 21 C -0.06 -0.12 3.08 71.24 0.22 0.10 16 22 O -0.55 -3.01 12.88 -148.98 -1.92 -4.93 16 23 Si 0.80 0.42 30.58 68.60 2.10 2.51 16 24 N -0.54 -1.71 6.07 -171.11 -1.04 -2.75 16 25 C -0.11 0.38 5.08 30.58 0.16 0.53 16 26 C -0.12 0.34 4.94 30.58 0.15 0.49 16 27 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 28 H 0.06 -0.06 8.13 -2.38 -0.02 -0.08 16 29 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 31 H 0.12 -1.07 8.14 -2.38 -0.02 -1.09 16 32 H 0.08 -0.76 8.14 -2.38 -0.02 -0.78 16 33 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 16 35 H 0.06 -0.12 8.14 -2.38 -0.02 -0.14 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.10 16 37 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.42 -4.00 7.66 -92.71 -0.71 -4.71 16 39 H 0.14 -1.26 8.14 -2.39 -0.02 -1.28 16 40 H 0.13 -1.27 8.14 -2.38 -0.02 -1.29 16 41 H 0.14 0.61 8.06 -2.91 -0.02 0.58 16 42 H 0.15 0.34 6.22 -2.91 -0.02 0.32 16 43 H 0.13 -0.14 7.96 -2.39 -0.02 -0.16 16 44 H 0.39 0.76 8.70 -74.05 -0.64 0.12 16 45 H -0.29 -1.88 7.11 99.48 0.71 -1.18 16 46 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 47 H 0.42 -0.16 8.96 -92.71 -0.83 -0.99 16 48 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.07 -0.39 7.18 -2.39 -0.02 -0.41 16 50 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 51 H 0.06 0.15 5.96 -2.39 -0.01 0.14 16 Total: 0.00 -27.28 410.77 0.16 -27.11 By element: Atomic # 1 Polarization: -15.10 SS G_CDS: -1.19 Total: -16.30 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.95 Total: 8.36 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -3.49 Total: -3.07 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -2.21 Total: -18.61 kcal Atomic # 14 Polarization: 0.42 SS G_CDS: 2.10 Total: 2.51 kcal Total: -27.28 0.16 -27.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16902906_14644196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.670 kcal (2) G-P(sol) polarization free energy of solvation -27.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds