Wall clock time and date at job start Sun Mar 7 2021 10:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99980 * 2 1 4 4 O 1.20830 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47103 * 54.99613 * 6 5 3 8 8 C 1.52997 * 109.47482 * 174.99860 * 6 5 3 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 6 11 11 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 12 12 C 1.52997 * 109.47415 * 180.02562 * 10 9 8 13 13 N 1.46493 * 109.47228 * 175.00130 * 12 10 9 14 14 C 1.34782 * 120.00325 * 180.02562 * 13 12 10 15 15 O 1.21636 * 119.99242 * 359.97438 * 14 13 12 16 16 C 1.47183 * 120.00253 * 180.02562 * 14 13 12 17 17 C 1.36011 * 123.46110 * 0.02562 * 16 14 13 18 18 S 1.70453 * 110.81407 * 179.97438 * 17 16 14 19 19 C 1.75497 * 92.44645 * 359.97438 * 18 17 16 20 20 C 1.50698 * 124.71078 * 179.97438 * 19 18 17 21 21 O 1.42908 * 109.47415 * 245.02546 * 20 19 18 22 22 Si 1.86301 * 109.47260 * 5.02819 * 20 19 18 23 23 C 1.32774 * 110.57557 * 359.74201 * 19 18 17 24 24 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 25 25 C 1.52999 * 109.46961 * 295.00221 * 6 5 3 26 26 H 1.08997 * 109.47096 * 59.99920 * 1 2 3 27 27 H 1.08993 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46993 * 300.00379 * 1 2 3 29 29 H 1.09001 * 109.47106 * 59.99404 * 5 3 2 30 30 H 1.09002 * 109.46753 * 299.99634 * 5 3 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 8 6 5 32 32 H 1.09001 * 109.46832 * 299.99974 * 8 6 5 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 34 34 H 1.09004 * 109.46724 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46818 * 295.00198 * 12 10 9 36 36 H 1.09001 * 109.47096 * 55.00094 * 12 10 9 37 37 H 0.97003 * 120.00270 * 0.02562 * 13 12 10 38 38 H 1.07994 * 124.59423 * 0.02562 * 17 16 14 39 39 H 1.08995 * 109.47199 * 125.02803 * 20 19 18 40 40 H 0.96703 * 113.99452 * 59.99628 * 21 20 19 41 41 H 1.48494 * 110.00032 * 180.02562 * 22 20 19 42 42 H 1.48508 * 109.99455 * 301.31602 * 22 20 19 43 43 H 1.08004 * 123.45668 * 180.24754 * 23 19 18 44 44 H 1.09002 * 109.47153 * 60.00231 * 24 10 9 45 45 H 1.09001 * 109.47289 * 180.02562 * 24 10 9 46 46 H 1.09000 * 109.47486 * 59.99547 * 25 6 5 47 47 H 1.09002 * 109.46716 * 299.99630 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0002 2.7420 -0.0011 7 1 3.5383 3.2578 0.8407 8 6 5.5229 2.8237 0.1241 9 6 5.9566 4.2910 0.1242 10 6 5.5161 4.9531 -1.1829 11 1 5.9780 4.4376 -2.0250 12 6 5.9504 6.4202 -1.1831 13 7 5.6353 7.0225 -2.4808 14 6 5.9310 8.3169 -2.7126 15 8 6.4590 8.9850 -1.8440 16 6 5.6139 8.9222 -4.0162 17 6 5.0234 8.2419 -5.0352 18 16 4.8056 9.2513 -6.3913 19 6 5.5246 10.6289 -5.5756 20 6 5.6965 11.9950 -6.1880 21 8 7.0894 12.2867 -6.3186 22 14 4.8950 12.0272 -7.8695 23 6 5.8915 10.3015 -4.3422 24 6 3.9935 4.8714 -1.3081 25 6 3.5597 3.4036 -1.3084 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7807 0.8892 31 1 5.9848 2.3079 -0.7178 32 1 5.8366 2.3524 1.0555 33 1 5.4947 4.8063 0.9662 34 1 7.0415 4.3491 0.2129 35 1 5.4205 6.9560 -0.3956 36 1 7.0240 6.4813 -1.0053 37 1 5.2139 6.4898 -3.1733 38 1 4.7312 7.2032 -4.9908 39 1 5.2275 12.7419 -5.5476 40 1 7.5716 11.6611 -6.8765 41 1 5.0582 13.3690 -8.4843 42 1 5.5042 10.9916 -8.7423 43 1 6.3533 10.9946 -3.6547 44 1 3.5315 5.3869 -0.4660 45 1 3.6796 5.3427 -2.2395 46 1 2.4749 3.3455 -1.3976 47 1 4.0216 2.8878 -2.1503 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16902906_6894386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:22:31 Heat of formation + Delta-G solvation = -139.512414 kcal Electronic energy + Delta-G solvation = -28499.568524 eV Core-core repulsion = 24353.812865 eV Total energy + Delta-G solvation = -4145.755659 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.67198 -41.12457 -39.78501 -38.86663 -37.60351 -37.21519 -36.19864 -33.80957 -31.88922 -31.65105 -30.07335 -28.29074 -26.97601 -26.37451 -24.75337 -23.72297 -22.49409 -22.01386 -21.34803 -20.81107 -20.37434 -19.04002 -18.57002 -18.11519 -17.79336 -17.59485 -17.46032 -16.74502 -16.60349 -16.36143 -16.00470 -15.69708 -15.33256 -15.19057 -15.04094 -14.90719 -14.48254 -14.41963 -14.24871 -14.05334 -13.87337 -13.64002 -13.49947 -13.36911 -13.04552 -12.92851 -12.68587 -12.67905 -12.52103 -12.43938 -12.02350 -11.88691 -11.85966 -11.76948 -11.64281 -11.41849 -11.19073 -10.98417 -10.82041 -10.74752 -10.26439 -10.00818 -9.46250 -5.03782 -0.35734 0.38145 0.68336 0.80448 1.19063 1.21677 1.54910 1.80638 1.90375 2.10417 2.24524 3.30019 3.52516 3.58602 3.67568 3.74597 3.85210 3.89617 3.95072 4.00670 4.15359 4.24558 4.26946 4.29125 4.31617 4.47147 4.49087 4.51212 4.54049 4.62061 4.65384 4.68067 4.69322 4.69737 4.79291 4.82387 4.97674 4.99077 5.11836 5.15492 5.17825 5.23577 5.26805 5.31758 5.37657 5.40752 5.54966 5.60647 6.40144 6.43449 6.74135 7.11978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.454 3.546 4 O -0.536 6.536 5 C -0.108 4.108 6 C -0.075 4.075 7 H 0.060 0.940 8 C -0.106 4.106 9 C -0.113 4.113 10 C -0.086 4.086 11 H 0.095 0.905 12 C 0.124 3.876 13 N -0.709 5.709 14 C 0.572 3.428 15 O -0.587 6.587 16 C -0.183 4.183 17 C -0.190 4.190 18 S 0.252 5.748 19 C -0.245 4.245 20 C -0.048 4.048 21 O -0.545 6.545 22 Si 0.729 3.271 23 C -0.076 4.076 24 C -0.110 4.110 25 C -0.119 4.119 26 H 0.060 0.940 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.413 0.587 38 H 0.203 0.797 39 H 0.128 0.872 40 H 0.388 0.612 41 H -0.276 1.276 42 H -0.248 1.248 43 H 0.132 0.868 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.769 -8.354 -4.501 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.299 3.701 4 O -0.426 6.426 5 C -0.145 4.145 6 C -0.094 4.094 7 H 0.078 0.922 8 C -0.143 4.143 9 C -0.151 4.151 10 C -0.105 4.105 11 H 0.113 0.887 12 C 0.001 3.999 13 N -0.361 5.361 14 C 0.359 3.641 15 O -0.469 6.469 16 C -0.201 4.201 17 C -0.329 4.329 18 S 0.519 5.481 19 C -0.362 4.362 20 C -0.159 4.159 21 O -0.353 6.353 22 Si 0.630 3.370 23 C -0.105 4.105 24 C -0.147 4.147 25 C -0.156 4.156 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.077 0.923 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.220 0.780 39 H 0.146 0.854 40 H 0.238 0.762 41 H -0.202 1.202 42 H -0.173 1.173 43 H 0.150 0.850 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.288 -7.252 -5.780 9.839 hybrid contribution 1.226 0.151 1.720 2.118 sum -2.062 -7.102 -4.060 8.436 Atomic orbital electron populations 1.23462 0.75342 1.05385 1.02262 1.86518 1.24583 1.33672 1.83836 1.24540 0.93540 0.80822 0.71151 1.90655 1.68259 1.37147 1.46542 1.21643 0.85156 0.99837 1.07848 1.21005 0.96720 0.92832 0.98829 0.92163 1.21525 0.93105 0.96143 1.03557 1.21499 1.01447 0.95901 0.96269 1.21360 0.96171 0.92674 1.00260 0.88670 1.21456 1.00350 0.93849 0.84263 1.45738 1.62461 1.10424 1.17443 1.17950 0.77551 0.82056 0.86552 1.90792 1.45348 1.63015 1.47724 1.20109 1.09547 0.95022 0.95381 1.26167 1.02151 1.06522 0.98046 1.82969 1.55161 0.97610 1.12405 1.24830 1.10489 1.01846 0.99036 1.24749 0.86548 0.92763 1.11796 1.86617 1.19828 1.56001 1.72887 0.94387 0.89003 0.80739 0.72911 1.20996 0.99259 0.94427 0.95866 1.21548 0.94637 0.96719 1.01822 1.21696 1.01088 0.95492 0.97316 0.92107 0.85585 0.92345 0.85402 0.85707 0.89963 0.90522 0.92424 0.90710 0.92866 0.91997 0.74881 0.77977 0.85400 0.76219 1.20172 1.17284 0.85046 0.93320 0.91333 0.92502 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.37 -0.60 10.57 -51.45 -0.54 -1.14 16 3 C 0.45 0.90 7.68 71.24 0.55 1.45 16 4 O -0.54 -4.45 13.72 21.95 0.30 -4.14 16 5 C -0.11 0.59 5.29 29.85 0.16 0.75 16 6 C -0.08 0.29 1.84 -10.80 -0.02 0.27 16 7 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 8 C -0.11 0.76 5.20 30.59 0.16 0.92 16 9 C -0.11 0.55 5.20 30.60 0.16 0.71 16 10 C -0.09 0.42 2.22 -10.79 -0.02 0.39 16 11 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 12 C 0.12 0.07 5.07 86.38 0.44 0.51 16 13 N -0.71 -0.19 5.25 -466.61 -2.45 -2.64 16 14 C 0.57 4.55 7.79 86.59 0.67 5.22 16 15 O -0.59 -10.42 16.80 -4.15 -0.07 -10.49 16 16 C -0.18 -0.68 5.98 -19.87 -0.12 -0.80 16 17 C -0.19 0.75 10.38 67.30 0.70 1.45 16 18 S 0.25 -1.22 20.20 -56.49 -1.14 -2.36 16 19 C -0.25 -0.15 5.65 24.51 0.14 -0.01 16 20 C -0.05 0.00 2.94 71.24 0.21 0.21 16 21 O -0.54 -1.92 12.88 -148.98 -1.92 -3.84 16 22 Si 0.73 -2.34 30.92 68.60 2.12 -0.22 16 23 C -0.08 -0.44 9.95 22.67 0.23 -0.21 16 24 C -0.11 0.34 5.08 30.61 0.16 0.50 16 25 C -0.12 0.35 4.95 30.61 0.15 0.50 16 26 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 27 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 28 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 29 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 30 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 31 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.41 -2.68 6.15 -92.71 -0.57 -3.25 16 38 H 0.20 -2.29 7.01 -2.91 -0.02 -2.31 16 39 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 40 H 0.39 -1.12 8.70 -74.05 -0.64 -1.76 16 41 H -0.28 -1.05 7.11 99.48 0.71 -0.34 16 42 H -0.25 0.39 7.11 99.48 0.71 1.09 16 43 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.07 -0.34 7.18 -2.39 -0.02 -0.35 16 46 H 0.06 0.14 5.96 -2.39 -0.01 0.13 16 47 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: 0.00 -24.58 393.27 0.86 -23.72 By element: Atomic # 1 Polarization: -11.71 SS G_CDS: -0.19 Total: -11.90 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 4.75 Total: 13.02 kcal Atomic # 7 Polarization: -0.19 SS G_CDS: -2.45 Total: -2.64 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -2.23 Total: -19.62 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.12 Total: -0.22 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -1.14 Total: -2.36 kcal Total: -24.58 0.86 -23.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16902906_6894386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.797 kcal (2) G-P(sol) polarization free energy of solvation -24.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds