Wall clock time and date at job start Sun Mar 7 2021 07:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39942 * 120.60166 * 80.55518 * 3 2 1 5 5 C 1.38416 * 118.34652 * 179.97438 * 4 3 2 6 6 C 1.38282 * 119.45539 * 0.02562 * 5 4 3 7 7 N 1.31938 * 121.19679 * 359.97341 * 6 5 4 8 8 C 1.32172 * 121.80064 * 359.77463 * 7 6 5 9 9 O 1.35479 * 119.79813 * 180.24385 * 8 7 6 10 10 C 1.42894 * 117.00174 * 0.24864 * 9 8 7 11 11 H 1.09001 * 109.47232 * 29.99363 * 10 9 8 12 12 C 1.52995 * 109.47474 * 149.99887 * 10 9 8 13 13 C 1.53000 * 109.47174 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47573 * 299.99915 * 13 12 10 15 15 H 1.09006 * 109.47199 * 300.00192 * 14 13 12 16 16 N 1.46492 * 109.47755 * 180.02562 * 14 13 12 17 17 C 1.34779 * 120.00635 * 155.00175 * 16 14 13 18 18 O 1.21281 * 119.99499 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00268 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.46956 * 179.97438 * 19 17 16 21 21 C 1.38233 * 119.99646 * 269.72626 * 20 19 17 22 22 C 1.38243 * 119.99710 * 179.74658 * 21 20 19 23 23 C 1.38235 * 119.99550 * 0.52719 * 22 21 20 24 24 C 1.50706 * 119.99781 * 179.76694 * 23 22 21 25 25 O 1.42904 * 109.46859 * 119.97956 * 24 23 22 26 26 Si 1.86296 * 109.47223 * 359.97438 * 24 23 22 27 27 C 1.38234 * 120.00511 * 359.74630 * 23 22 21 28 28 C 1.38233 * 120.00045 * 90.00350 * 20 19 17 29 29 C 1.53007 * 109.46909 * 59.99578 * 14 13 12 30 30 C 1.53000 * 109.47347 * 300.00560 * 29 14 13 31 31 H 1.08006 * 120.82641 * 359.95364 * 4 3 2 32 32 H 1.07999 * 120.27011 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.40153 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47265 * 300.00141 * 12 10 9 35 35 H 1.09006 * 109.46970 * 59.99854 * 12 10 9 36 36 H 1.08996 * 109.47375 * 60.00606 * 13 12 10 37 37 H 1.09007 * 109.47363 * 180.02562 * 13 12 10 38 38 H 0.97011 * 119.99604 * 335.00141 * 16 14 13 39 39 H 1.09004 * 109.47057 * 300.00040 * 19 17 16 40 40 H 1.09003 * 109.47177 * 59.99984 * 19 17 16 41 41 H 1.07996 * 120.00704 * 0.02562 * 21 20 19 42 42 H 1.08001 * 120.00128 * 180.29601 * 22 21 20 43 43 H 1.08996 * 109.47419 * 239.97641 * 24 23 22 44 44 H 0.96701 * 113.99863 * 300.00507 * 25 24 23 45 45 H 1.48494 * 110.00121 * 179.97438 * 26 24 23 46 46 H 1.48506 * 109.99836 * 301.31774 * 26 24 23 47 47 H 1.07994 * 120.00220 * 179.97438 * 27 23 22 48 48 H 1.08005 * 119.99966 * 359.97438 * 28 20 19 49 49 H 1.09006 * 109.46688 * 60.00301 * 29 14 13 50 50 H 1.08999 * 109.47372 * 179.97438 * 29 14 13 51 51 H 1.08993 * 109.46967 * 299.99792 * 30 29 14 52 52 H 1.09000 * 109.47028 * 179.97438 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2805 -0.1967 -1.1882 5 6 4.6635 -0.1866 -1.1346 6 6 5.2955 0.0155 0.0787 7 7 4.6041 0.1996 1.1872 8 6 3.2824 0.2041 1.1909 9 8 2.6131 0.4019 2.3522 10 6 3.3996 0.6034 3.5280 11 1 4.3422 1.0792 3.2576 12 6 2.6368 1.5011 4.5042 13 6 3.4787 1.7164 5.7635 14 6 3.7601 0.3662 6.4259 15 1 2.8172 -0.1095 6.6961 16 7 4.5656 0.5723 7.6319 17 6 4.5250 -0.3303 8.6320 18 8 3.8217 -1.3134 8.5332 19 6 5.3533 -0.1179 9.8729 20 6 5.1284 -1.2612 10.8286 21 6 4.1223 -1.1845 11.7734 22 6 3.9126 -2.2354 12.6467 23 6 4.7162 -3.3584 12.5823 24 6 4.4911 -4.5019 13.5377 25 8 4.1882 -5.6871 12.7991 26 14 3.0684 -4.0947 14.6694 27 6 5.7261 -3.4327 11.6412 28 6 5.9320 -2.3841 10.7643 29 6 4.5229 -0.5316 5.4496 30 6 3.6810 -0.7469 4.1903 31 1 2.7640 -0.3533 -2.1237 32 1 5.2443 -0.3353 -2.0329 33 1 6.3747 0.0236 0.1195 34 1 2.4359 2.4629 4.0322 35 1 1.6941 1.0252 4.7747 36 1 4.4214 2.1921 5.4934 37 1 2.9350 2.3556 6.4592 38 1 5.1284 1.3586 7.7108 39 1 6.4082 -0.0722 9.6022 40 1 5.0598 0.8171 10.3501 41 1 3.4970 -0.3055 11.8264 42 1 3.1235 -2.1776 13.3818 43 1 5.3918 -4.6632 14.1301 44 1 3.3969 -5.6156 12.2480 45 1 2.8358 -5.2147 15.6162 46 1 3.3577 -2.8463 15.4200 47 1 6.3541 -4.3098 11.5911 48 1 6.7208 -2.4422 10.0287 49 1 5.4657 -0.0559 5.1794 50 1 4.7238 -1.4934 5.9216 51 1 2.7383 -1.2225 4.4605 52 1 4.2246 -1.3861 3.4947 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_12335836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:11:45 Heat of formation + Delta-G solvation = -15.033789 kcal Electronic energy + Delta-G solvation = -34995.907767 eV Core-core repulsion = 30313.097327 eV Total energy + Delta-G solvation = -4682.810439 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.173 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.98376 -41.26821 -40.42731 -39.69560 -38.10573 -37.73525 -37.56871 -34.89732 -34.00113 -33.73072 -31.99661 -31.93017 -31.83015 -30.42571 -28.94697 -25.88993 -25.69419 -24.73545 -23.91215 -23.80801 -23.06625 -22.03236 -21.43527 -20.98491 -20.24640 -19.40259 -18.48088 -18.18808 -17.83757 -17.57338 -17.00639 -16.84854 -16.53517 -16.33813 -16.18927 -16.05840 -15.88436 -15.53523 -15.29304 -15.05348 -14.93750 -14.74398 -14.71600 -14.53053 -14.36993 -14.29211 -14.16204 -14.06534 -13.96263 -13.82915 -13.32899 -13.32634 -13.18921 -13.07122 -12.89978 -12.84311 -12.63158 -12.26954 -12.22439 -12.11451 -11.97769 -11.70305 -11.54762 -11.28583 -10.97698 -10.93413 -10.72886 -10.46063 -10.05013 -9.87443 -9.59915 -9.59402 -5.01878 -0.42199 0.21743 0.24464 0.45595 1.29322 1.50727 1.59053 1.68693 1.78609 1.89039 1.90960 2.20008 2.71288 2.79469 2.80008 3.27042 3.48661 3.54879 3.59623 3.63837 3.76785 3.80389 3.91433 3.95260 3.95718 3.99320 4.05418 4.10999 4.13230 4.18442 4.28985 4.33235 4.37574 4.39026 4.46164 4.47629 4.48906 4.61422 4.64011 4.72726 4.76797 4.86110 4.94969 4.99169 5.02700 5.04780 5.06590 5.09085 5.09396 5.21273 5.25319 5.38272 5.44738 5.53482 5.54072 5.59689 6.02294 6.09374 6.36433 6.61403 6.69717 6.71054 7.33047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.283 3.717 3 C -0.129 4.129 4 C 0.014 3.986 5 C -0.198 4.198 6 C 0.172 3.828 7 N -0.549 5.549 8 C 0.357 3.643 9 O -0.316 6.316 10 C 0.092 3.908 11 H 0.104 0.896 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.145 3.855 15 H 0.062 0.938 16 N -0.714 5.714 17 C 0.513 3.487 18 O -0.577 6.577 19 C -0.098 4.098 20 C -0.071 4.071 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.076 4.076 25 O -0.558 6.558 26 Si 0.772 3.228 27 C -0.108 4.108 28 C -0.116 4.116 29 C -0.113 4.113 30 C -0.126 4.126 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.202 0.798 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.419 0.581 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.393 0.607 45 H -0.298 1.298 46 H -0.281 1.281 47 H 0.122 0.878 48 H 0.132 0.868 49 H 0.086 0.914 50 H 0.051 0.949 51 H 0.053 0.947 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 7.068 -4.143 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.031 4.031 3 C -0.135 4.135 4 C -0.013 4.013 5 C -0.217 4.217 6 C 0.016 3.984 7 N -0.273 5.273 8 C 0.175 3.825 9 O -0.222 6.222 10 C 0.037 3.963 11 H 0.122 0.878 12 C -0.153 4.153 13 C -0.147 4.147 14 C 0.040 3.960 15 H 0.081 0.919 16 N -0.366 5.366 17 C 0.301 3.699 18 O -0.456 6.456 19 C -0.137 4.137 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.186 4.186 25 O -0.366 6.366 26 Si 0.678 3.322 27 C -0.126 4.126 28 C -0.134 4.134 29 C -0.152 4.152 30 C -0.164 4.164 31 H 0.191 0.809 32 H 0.203 0.797 33 H 0.219 0.781 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.256 0.744 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.243 0.757 45 H -0.226 1.226 46 H -0.208 1.208 47 H 0.140 0.860 48 H 0.150 0.850 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.072 0.928 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.348 6.445 -2.211 9.313 hybrid contribution 0.636 -0.328 -0.640 0.960 sum 6.984 6.117 -2.852 9.712 Atomic orbital electron populations 1.81277 1.13353 1.11023 1.08484 1.25541 0.92533 0.92404 0.92666 1.16147 0.84474 1.18311 0.94605 1.21934 0.94917 0.88485 0.95994 1.22395 0.93836 1.04201 1.01303 1.23467 1.01966 0.86860 0.86097 1.67502 1.05079 1.21164 1.33552 1.19869 0.88171 0.89127 0.85317 1.86288 1.36663 1.84191 1.15076 1.22614 0.95698 0.96519 0.81502 0.87778 1.21582 0.99081 0.99887 0.94720 1.21678 1.01900 0.95521 0.95593 1.20919 0.94174 0.96628 0.84312 0.91946 1.45919 1.47527 1.26248 1.16955 1.20993 0.81838 0.82179 0.84888 1.90750 1.42758 1.30680 1.81450 1.20764 1.02534 0.98971 0.91480 1.19599 0.95852 0.95645 0.96083 1.21238 0.97307 0.99386 0.94906 1.21168 0.99324 0.93699 0.99994 1.20405 0.97437 0.96353 0.98728 1.25215 1.09020 0.85540 0.98829 1.86444 1.51553 1.34663 1.63907 0.93591 0.84118 0.76197 0.78316 1.21073 0.97605 0.98635 0.95328 1.21236 1.00070 0.93268 0.98786 1.21734 0.99329 1.00041 0.94096 1.21824 1.00335 0.96923 0.97353 0.80945 0.79727 0.78148 0.89727 0.91869 0.88511 0.89101 0.74351 0.85295 0.84962 0.84059 0.84264 0.87670 0.75713 1.22583 1.20756 0.86029 0.85035 0.89526 0.92993 0.92810 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.38 18.54 19.00 0.35 -6.03 16 2 C 0.28 2.23 14.91 88.33 1.32 3.55 16 3 C -0.13 -0.17 5.77 -21.10 -0.12 -0.30 16 4 C 0.01 -0.09 9.90 22.73 0.23 0.14 16 5 C -0.20 2.09 10.09 22.32 0.23 2.31 16 6 C 0.17 -1.44 11.16 84.69 0.95 -0.49 16 7 N -0.55 0.86 8.64 -307.96 -2.66 -1.80 16 8 C 0.36 0.85 7.47 85.16 0.64 1.49 16 9 O -0.32 -1.58 9.20 -87.79 -0.81 -2.38 16 10 C 0.09 -0.01 2.38 30.59 0.07 0.06 16 11 H 0.10 -0.19 6.99 -2.39 -0.02 -0.21 16 12 C -0.11 0.29 5.57 30.59 0.17 0.46 16 13 C -0.11 0.77 5.39 30.59 0.16 0.94 16 14 C 0.14 -0.36 2.45 44.99 0.11 -0.25 16 15 H 0.06 0.25 7.58 -2.38 -0.02 0.23 16 16 N -0.71 4.01 5.08 -442.53 -2.25 1.76 16 17 C 0.51 0.08 7.79 87.66 0.68 0.76 16 18 O -0.58 -6.24 15.70 -3.03 -0.05 -6.29 16 19 C -0.10 0.56 5.83 29.10 0.17 0.73 16 20 C -0.07 -0.08 4.37 -19.87 -0.09 -0.17 16 21 C -0.11 -0.15 9.70 22.27 0.22 0.07 16 22 C -0.12 -0.26 8.67 22.27 0.19 -0.07 16 23 C -0.13 -0.51 5.39 -19.86 -0.11 -0.61 16 24 C -0.08 -0.23 2.82 71.24 0.20 -0.03 16 25 O -0.56 -2.44 12.77 -148.98 -1.90 -4.34 16 26 Si 0.77 0.46 29.79 68.60 2.04 2.51 16 27 C -0.11 -0.54 9.61 22.27 0.21 -0.32 16 28 C -0.12 -0.36 9.70 22.27 0.22 -0.14 16 29 C -0.11 0.13 5.50 30.60 0.17 0.30 16 30 C -0.13 -0.15 5.54 30.60 0.17 0.02 16 31 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 32 H 0.19 -3.18 8.06 -2.91 -0.02 -3.21 16 33 H 0.20 -3.06 8.06 -2.91 -0.02 -3.08 16 34 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 38 H 0.42 -5.36 8.60 -92.70 -0.80 -6.15 16 39 H 0.13 -1.35 8.09 -2.38 -0.02 -1.37 16 40 H 0.13 -1.46 8.08 -2.39 -0.02 -1.48 16 41 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.14 -0.25 4.88 -2.91 -0.01 -0.27 16 43 H 0.11 0.40 7.96 -2.39 -0.02 0.38 16 44 H 0.39 -1.06 8.70 -74.06 -0.64 -1.70 16 45 H -0.30 -2.28 7.11 99.48 0.71 -1.57 16 46 H -0.28 -1.21 7.11 99.48 0.71 -0.50 16 47 H 0.12 0.56 8.06 -2.91 -0.02 0.53 16 48 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 49 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 50 H 0.05 0.20 8.14 -2.39 -0.02 0.19 16 51 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 52 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 Total: 0.00 -30.99 438.32 0.08 -30.91 By element: Atomic # 1 Polarization: -22.34 SS G_CDS: -0.43 Total: -22.77 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.78 Total: 8.44 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: -4.56 Total: -6.07 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -2.76 Total: -13.02 kcal Atomic # 14 Polarization: 0.46 SS G_CDS: 2.04 Total: 2.51 kcal Total: -30.99 0.08 -30.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_12335836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.878 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds