Wall clock time and date at job start Sun Mar 7 2021 07:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39944 * 120.60189 * 276.41425 * 3 2 1 5 5 C 1.38413 * 118.34404 * 179.97438 * 4 3 2 6 6 C 1.38278 * 119.46123 * 359.97438 * 5 4 3 7 7 N 1.31941 * 121.18853 * 359.74361 * 6 5 4 8 8 C 1.32172 * 121.81024 * 0.52657 * 7 6 5 9 9 O 1.35471 * 119.80128 * 179.75196 * 8 7 6 10 10 C 1.42895 * 117.00537 * 359.72797 * 9 8 7 11 11 H 1.09002 * 109.46880 * 29.99794 * 10 9 8 12 12 C 1.52997 * 109.47503 * 149.99918 * 10 9 8 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47233 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 16 16 N 1.46492 * 109.47204 * 180.02562 * 14 13 12 17 17 C 1.34780 * 119.99930 * 155.00105 * 16 14 13 18 18 O 1.21569 * 119.99853 * 0.02562 * 17 16 14 19 19 C 1.47728 * 119.99970 * 179.97438 * 17 16 14 20 20 C 1.39630 * 120.11616 * 179.72579 * 19 17 16 21 21 C 1.37862 * 119.87914 * 179.67775 * 20 19 17 22 22 C 1.50696 * 119.94371 * 180.29788 * 21 20 19 23 23 O 1.42903 * 109.46957 * 15.32456 * 22 21 20 24 24 Si 1.86298 * 109.47063 * 135.32101 * 22 21 20 25 25 C 1.38636 * 120.11517 * 0.62182 * 21 20 19 26 26 F 1.35097 * 119.88021 * 179.69841 * 25 21 20 27 27 C 1.38675 * 120.24041 * 359.67550 * 25 21 20 28 28 C 1.37821 * 120.11893 * 0.02562 * 27 25 21 29 29 C 1.52997 * 109.46817 * 60.00194 * 14 13 12 30 30 C 1.52999 * 109.47162 * 270.00415 * 10 9 8 31 31 H 1.08000 * 120.82935 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.26966 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.40660 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47153 * 60.00043 * 12 10 9 35 35 H 1.09001 * 109.46832 * 300.00234 * 12 10 9 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 38 38 H 0.96998 * 120.00353 * 335.00390 * 16 14 13 39 39 H 1.08003 * 120.05886 * 359.97438 * 20 19 17 40 40 H 1.08999 * 109.47436 * 255.32530 * 22 21 20 41 41 H 0.96695 * 114.00263 * 59.99563 * 23 22 21 42 42 H 1.48502 * 109.99948 * 180.02562 * 24 22 21 43 43 H 1.48501 * 110.00135 * 301.32149 * 24 22 21 44 44 H 1.07999 * 119.94601 * 180.02562 * 27 25 21 45 45 H 1.08001 * 120.05919 * 180.02562 * 28 27 25 46 46 H 1.09002 * 109.47153 * 60.00231 * 29 14 13 47 47 H 1.09001 * 109.47289 * 180.02562 * 29 14 13 48 48 H 1.09000 * 109.47486 * 59.99398 * 30 10 9 49 49 H 1.09002 * 109.46716 * 299.99480 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2805 -0.1336 1.1970 5 6 4.6635 -0.1274 1.1427 6 6 5.2956 0.0092 -0.0795 7 7 4.6040 0.1289 -1.1968 8 6 3.2823 0.1343 -1.2008 9 8 2.6132 0.2647 -2.3715 10 6 3.3997 0.3972 -3.5571 11 1 4.3429 -0.1338 -3.4287 12 6 2.6377 -0.1964 -4.7437 13 6 3.4802 -0.0550 -6.0130 14 6 3.7608 1.4258 -6.2766 15 1 2.8178 1.9570 -6.4052 16 7 4.5670 1.5612 -7.4922 17 6 4.5259 2.7049 -8.2041 18 8 3.8202 3.6243 -7.8371 19 6 5.3392 2.8417 -9.4297 20 6 5.2942 4.0234 -10.1722 21 6 6.0603 4.1482 -11.3115 22 6 6.0179 5.4254 -12.1103 23 8 5.4182 6.4582 -11.3255 24 14 7.7515 5.9254 -12.5743 25 6 6.8645 3.0984 -11.7275 26 9 7.6087 3.2236 -12.8480 27 6 6.9083 1.9203 -10.9972 28 6 6.1512 1.7871 -9.8533 29 6 4.5228 2.0194 -5.0900 30 6 3.6799 1.8781 -3.8203 31 1 2.7640 -0.2394 2.1396 32 1 5.2443 -0.2293 2.0476 33 1 6.3748 0.0143 -0.1208 34 1 1.6945 0.3345 -4.8722 35 1 2.4381 -1.2515 -4.5561 36 1 4.4232 -0.5862 -5.8843 37 1 2.9371 -0.4776 -6.8584 38 1 5.1302 0.8277 -7.7849 39 1 4.6639 4.8398 -9.8519 40 1 5.4304 5.2689 -13.0149 41 1 5.8892 6.6513 -10.5034 42 1 7.7234 7.1841 -13.3619 43 1 8.5715 6.1109 -11.3502 44 1 7.5368 1.1056 -11.3253 45 1 6.1863 0.8694 -9.2851 46 1 5.4658 1.4882 -4.9613 47 1 4.7224 3.0745 -5.2775 48 1 4.2227 2.3011 -2.9750 49 1 2.7367 2.4091 -3.9488 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_12496548.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:13:41 Heat of formation + Delta-G solvation = -51.425233 kcal Electronic energy + Delta-G solvation = -35740.232766 eV Core-core repulsion = 30741.927918 eV Total energy + Delta-G solvation = -4998.304848 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.26980 -42.00586 -41.51954 -40.27342 -39.56263 -38.10527 -37.77941 -37.73662 -35.13227 -33.73655 -32.87523 -32.13668 -31.94165 -31.69613 -29.65904 -27.12815 -25.77940 -25.39688 -24.48906 -23.89316 -23.24526 -22.84119 -21.55026 -21.14578 -20.28192 -19.43556 -19.31906 -18.58373 -18.21449 -17.91596 -17.82992 -17.06854 -17.01381 -16.90548 -16.34874 -16.19707 -16.13978 -15.93616 -15.73176 -15.32571 -15.15540 -15.13598 -15.04485 -14.77676 -14.48202 -14.34427 -14.29018 -14.22707 -14.16692 -13.99232 -13.88509 -13.84982 -13.40418 -13.33753 -13.12916 -12.99852 -12.86170 -12.75755 -12.47616 -12.24813 -12.14062 -11.96866 -11.57165 -11.34744 -11.21921 -11.00207 -10.97909 -10.73540 -10.25965 -10.02582 -9.73719 -9.59802 -4.85523 -0.49052 -0.42512 0.02712 0.21405 1.15959 1.49463 1.50111 1.61123 1.75570 1.85852 1.88530 2.02438 2.59127 2.70868 2.79126 2.96089 3.15248 3.26466 3.32538 3.50800 3.58016 3.60325 3.68262 3.76943 3.91324 3.95681 4.01154 4.02763 4.10171 4.12402 4.17240 4.26827 4.29375 4.37312 4.41068 4.46380 4.57000 4.60530 4.74906 4.80726 4.84314 4.90920 4.94023 4.97962 5.02128 5.02799 5.05266 5.08967 5.09876 5.19086 5.20739 5.40142 5.44625 5.63422 6.09057 6.31275 6.35915 6.43898 6.70659 7.11031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.283 3.717 3 C -0.129 4.129 4 C 0.014 3.986 5 C -0.198 4.198 6 C 0.173 3.827 7 N -0.549 5.549 8 C 0.357 3.643 9 O -0.316 6.316 10 C 0.091 3.909 11 H 0.107 0.893 12 C -0.114 4.114 13 C -0.110 4.110 14 C 0.143 3.857 15 H 0.065 0.935 16 N -0.703 5.703 17 C 0.559 3.441 18 O -0.579 6.579 19 C -0.154 4.154 20 C -0.040 4.040 21 C -0.164 4.164 22 C -0.081 4.081 23 O -0.546 6.546 24 Si 0.747 3.253 25 C 0.119 3.881 26 F -0.100 7.100 27 C -0.141 4.141 28 C -0.045 4.045 29 C -0.114 4.114 30 C -0.126 4.126 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.202 0.798 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.419 0.581 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.387 0.613 42 H -0.291 1.291 43 H -0.284 1.284 44 H 0.182 0.818 45 H 0.177 0.823 46 H 0.090 0.910 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -9.094 1.698 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.031 4.031 3 C -0.136 4.136 4 C -0.013 4.013 5 C -0.218 4.218 6 C 0.017 3.983 7 N -0.272 5.272 8 C 0.175 3.825 9 O -0.222 6.222 10 C 0.036 3.964 11 H 0.125 0.875 12 C -0.153 4.153 13 C -0.147 4.147 14 C 0.038 3.962 15 H 0.083 0.917 16 N -0.355 5.355 17 C 0.347 3.653 18 O -0.460 6.460 19 C -0.157 4.157 20 C -0.060 4.060 21 C -0.166 4.166 22 C -0.189 4.189 23 O -0.354 6.354 24 Si 0.650 3.350 25 C 0.099 3.901 26 F -0.079 7.079 27 C -0.159 4.159 28 C -0.063 4.063 29 C -0.153 4.153 30 C -0.165 4.165 31 H 0.190 0.810 32 H 0.203 0.797 33 H 0.219 0.781 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.258 0.742 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.236 0.764 42 H -0.218 1.218 43 H -0.210 1.210 44 H 0.199 0.801 45 H 0.195 0.805 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.546 -7.774 0.611 12.326 hybrid contribution -0.638 0.890 1.387 1.767 sum 8.908 -6.884 1.998 11.434 Atomic orbital electron populations 1.81281 1.13382 1.11100 1.08453 1.25554 0.92548 0.92378 0.92661 1.16148 0.84445 1.18762 0.94209 1.21930 0.94934 0.88392 0.96092 1.22393 0.93817 1.04239 1.01302 1.23472 1.01976 0.86796 0.86096 1.67496 1.05036 1.20948 1.33747 1.19861 0.88181 0.89080 0.85331 1.86289 1.36664 1.85271 1.13990 1.22625 0.95811 0.96742 0.81213 0.87540 1.21579 0.99035 1.02290 0.92355 1.21697 1.02207 0.93550 0.97278 1.21029 0.94116 0.97655 0.83358 0.91721 1.45761 1.47185 1.16641 1.25909 1.18433 0.81029 0.82496 0.83353 1.90808 1.42895 1.40964 1.71345 1.19963 1.02080 0.96726 0.96947 1.20867 0.95445 0.97416 0.92228 1.20302 1.00153 0.97347 0.98764 1.25087 1.11771 0.85394 0.96683 1.86572 1.54984 1.55652 1.38175 0.94128 0.74240 0.83652 0.82962 1.17816 0.92252 0.95353 0.84677 1.91196 1.73967 1.93771 1.48944 1.21480 1.01932 0.97121 0.95376 1.21555 0.91734 0.98055 0.94966 1.21756 0.99476 1.01253 0.92814 1.21839 1.00330 0.95868 0.98443 0.80993 0.79748 0.78097 0.91919 0.89516 0.88037 0.88954 0.74235 0.85059 0.84966 0.76391 1.21824 1.21021 0.80061 0.80533 0.89117 0.92977 0.91366 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -6.42 18.54 19.00 0.35 -6.06 16 2 C 0.28 2.22 14.91 88.33 1.32 3.54 16 3 C -0.13 -0.15 5.77 -21.10 -0.12 -0.27 16 4 C 0.01 -0.09 9.90 22.73 0.23 0.14 16 5 C -0.20 2.13 10.09 22.32 0.23 2.36 16 6 C 0.17 -1.50 11.16 84.69 0.95 -0.56 16 7 N -0.55 1.10 8.64 -307.97 -2.66 -1.56 16 8 C 0.36 0.74 7.47 85.16 0.64 1.38 16 9 O -0.32 -1.47 9.20 -87.70 -0.81 -2.27 16 10 C 0.09 -0.06 2.38 30.59 0.07 0.02 16 11 H 0.11 -0.28 6.98 -2.39 -0.02 -0.30 16 12 C -0.11 0.35 5.57 30.59 0.17 0.52 16 13 C -0.11 0.83 5.39 30.60 0.16 1.00 16 14 C 0.14 -0.33 2.45 44.99 0.11 -0.22 16 15 H 0.06 0.27 7.58 -2.39 -0.02 0.26 16 16 N -0.70 3.10 5.03 -445.53 -2.24 0.86 16 17 C 0.56 1.84 7.73 86.75 0.67 2.51 16 18 O -0.58 -7.73 16.01 -3.93 -0.06 -7.79 16 19 C -0.15 0.05 5.87 -20.09 -0.12 -0.07 16 20 C -0.04 -0.12 8.78 22.52 0.20 0.07 16 21 C -0.16 -0.09 5.13 -19.86 -0.10 -0.20 16 22 C -0.08 -0.13 2.96 71.23 0.21 0.08 16 23 O -0.55 -2.77 11.64 -148.98 -1.73 -4.50 16 24 Si 0.75 0.85 29.57 68.60 2.03 2.88 16 25 C 0.12 -0.39 6.67 22.47 0.15 -0.24 16 26 F -0.10 0.42 13.70 44.97 0.62 1.04 16 27 C -0.14 1.15 10.01 22.28 0.22 1.37 16 28 C -0.04 0.37 9.54 22.52 0.21 0.58 16 29 C -0.11 0.15 5.50 30.61 0.17 0.32 16 30 C -0.13 -0.11 5.55 30.61 0.17 0.06 16 31 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 32 H 0.19 -3.21 8.06 -2.91 -0.02 -3.23 16 33 H 0.20 -3.15 8.06 -2.91 -0.02 -3.17 16 34 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 38 H 0.42 -5.18 6.63 -92.71 -0.61 -5.80 16 39 H 0.13 0.91 6.67 -2.91 -0.02 0.89 16 40 H 0.13 -0.01 7.96 -2.39 -0.02 -0.03 16 41 H 0.39 -0.05 8.44 -74.06 -0.63 -0.67 16 42 H -0.29 -2.29 7.11 99.48 0.71 -1.58 16 43 H -0.28 -1.59 7.11 99.48 0.71 -0.88 16 44 H 0.18 -2.60 8.06 -2.91 -0.02 -2.63 16 45 H 0.18 -2.93 6.40 -2.91 -0.02 -2.94 16 46 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 49 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 Total: 0.00 -30.29 417.40 0.86 -29.44 By element: Atomic # 1 Polarization: -24.26 SS G_CDS: -0.17 Total: -24.42 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.53 Total: 12.39 kcal Atomic # 7 Polarization: -2.21 SS G_CDS: -4.55 Total: -6.76 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -2.60 Total: -14.56 kcal Atomic # 9 Polarization: 0.42 SS G_CDS: 0.62 Total: 1.04 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: 2.03 Total: 2.88 kcal Total: -30.29 0.86 -29.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_12496548.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.989 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds