Wall clock time and date at job start Sun Mar 7 2021 07:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38976 * 119.95735 * 2 1 4 4 O 1.35709 * 119.90924 * 0.02562 * 3 2 1 5 5 C 1.39017 * 120.17205 * 179.76545 * 3 2 1 6 6 C 1.50707 * 119.95281 * 180.23452 * 5 3 2 7 7 O 1.42896 * 109.46958 * 75.28031 * 6 5 3 8 8 Si 1.86302 * 109.46821 * 195.27645 * 6 5 3 9 9 C 1.37676 * 120.09021 * 0.51052 * 5 3 2 10 10 C 1.39750 * 119.91194 * 359.74893 * 9 5 3 11 11 C 1.47610 * 120.08829 * 179.97438 * 10 9 5 12 12 O 1.21577 * 119.99993 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00026 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99863 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47547 * 35.00001 * 14 13 11 16 16 C 1.53008 * 109.47242 * 154.99740 * 14 13 11 17 17 C 1.52997 * 109.47087 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47483 * 300.00088 * 17 16 14 19 19 H 1.08996 * 109.46840 * 300.00312 * 18 17 16 20 20 O 1.42900 * 109.47019 * 180.02562 * 18 17 16 21 21 C 1.35477 * 116.99593 * 150.00335 * 20 18 17 22 22 N 1.32161 * 119.80445 * 359.71876 * 21 20 18 23 23 C 1.31940 * 121.81008 * 179.75552 * 22 21 20 24 24 C 1.38280 * 121.18713 * 0.52781 * 23 22 21 25 25 C 1.38408 * 119.45907 * 359.74888 * 24 23 22 26 26 C 1.39940 * 118.34847 * 359.97438 * 25 24 23 27 27 C 1.43200 * 120.60407 * 180.02562 * 26 25 24 28 28 N 9.75173 * 138.08757 * 180.35593 * 11 1 2 29 29 C 1.52996 * 109.46899 * 60.00192 * 18 17 16 30 30 C 1.53001 * 109.47013 * 274.99635 * 14 13 11 31 31 C 1.37723 * 119.95021 * 180.27651 * 2 1 3 32 32 H 1.08999 * 109.47015 * 269.72562 * 1 2 3 33 33 H 1.09000 * 109.46646 * 29.71714 * 1 2 3 34 34 H 1.09000 * 109.47248 * 149.72432 * 1 2 3 35 35 H 0.96702 * 113.99857 * 90.00433 * 4 3 2 36 36 H 1.08999 * 109.46911 * 315.27493 * 6 5 3 37 37 H 0.96702 * 114.00560 * 59.99542 * 7 6 5 38 38 H 1.48504 * 109.99694 * 179.97438 * 8 6 5 39 39 H 1.48494 * 110.00027 * 301.31907 * 8 6 5 40 40 H 1.08009 * 120.04629 * 179.71814 * 9 5 3 41 41 H 0.97003 * 119.99985 * 359.97438 * 13 11 10 42 42 H 1.08998 * 109.46946 * 300.00312 * 16 14 13 43 43 H 1.09001 * 109.46636 * 59.99704 * 16 14 13 44 44 H 1.09002 * 109.46735 * 60.00380 * 17 16 14 45 45 H 1.09003 * 109.47064 * 180.02562 * 17 16 14 46 46 H 1.07999 * 119.41119 * 180.29902 * 23 22 21 47 47 H 1.08002 * 120.27183 * 179.75802 * 24 23 22 48 48 H 1.08005 * 120.82740 * 180.02562 * 25 24 23 49 49 H 1.08997 * 109.47664 * 60.00014 * 29 18 17 50 50 H 1.09003 * 109.47037 * 180.02562 * 29 18 17 51 51 H 1.09002 * 109.47374 * 299.99998 * 30 14 13 52 52 H 1.08995 * 109.47196 * 60.00323 * 30 14 13 53 53 H 1.07999 * 120.04782 * 359.95585 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2010 1.2041 0.0000 4 8 1.5198 2.3778 0.0005 5 6 3.5912 1.2093 0.0049 6 6 4.3387 2.5179 0.0102 7 8 4.2731 3.0986 1.3142 8 14 6.1196 2.2175 -0.4469 9 6 4.2859 0.0207 -0.0008 10 6 3.5918 -1.1922 -0.0063 11 6 4.3327 -2.4689 -0.0130 12 8 5.5485 -2.4661 -0.0133 13 7 3.6615 -3.6376 -0.0188 14 6 4.3969 -4.9045 -0.0248 15 1 5.3073 -4.7992 0.5652 16 6 3.5222 -6.0049 0.5794 17 6 4.2900 -7.3282 0.5724 18 6 4.6544 -7.6990 -0.8666 19 1 3.7438 -7.8041 -1.4563 20 8 5.3710 -8.9353 -0.8730 21 6 5.2380 -9.7175 -1.9711 22 7 4.4663 -9.3232 -2.9690 23 6 4.3121 -10.0511 -4.0585 24 6 4.9469 -11.2714 -4.2002 25 6 5.7631 -11.7362 -3.1836 26 6 5.9162 -10.9444 -2.0399 27 6 6.7495 -11.3782 -0.9591 28 7 7.4129 -11.7209 -0.1021 29 6 5.5291 -6.5987 -1.4707 30 6 4.7617 -5.2755 -1.4637 31 6 2.1946 -1.1933 -0.0058 32 1 -0.3633 -0.0049 1.0277 33 1 -0.3632 0.8925 -0.5094 34 1 -0.3634 -0.8875 -0.5181 35 1 1.3227 2.7178 0.8841 36 1 3.8875 3.1970 -0.7131 37 1 4.6573 2.5477 2.0100 38 1 6.8676 3.5004 -0.4458 39 1 6.7373 1.2681 0.5134 40 1 5.3660 0.0256 -0.0016 41 1 2.6915 -3.6398 -0.0181 42 1 3.2622 -5.7406 1.6044 43 1 2.6117 -6.1103 -0.0107 44 1 5.2005 -7.2230 1.1623 45 1 3.6666 -8.1122 1.0025 46 1 3.6757 -9.6892 -4.8525 47 1 4.8071 -11.8569 -5.0969 48 1 6.2699 -12.6859 -3.2712 49 1 6.4397 -6.4935 -0.8810 50 1 5.7884 -6.8626 -2.4960 51 1 3.8513 -5.3810 -2.0537 52 1 5.3849 -4.4917 -1.8941 53 1 1.6546 -2.1286 -0.0096 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_13287732.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:14:44 Heat of formation + Delta-G solvation = -55.747826 kcal Electronic energy + Delta-G solvation = -37933.468304 eV Core-core repulsion = 32930.210179 eV Total energy + Delta-G solvation = -5003.258125 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.172 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.00910 -41.73229 -40.75266 -39.78395 -38.14674 -37.97827 -37.71715 -37.44663 -35.10886 -33.98322 -33.72441 -32.25357 -31.93667 -31.61206 -29.56625 -27.97067 -26.89146 -25.76111 -25.30285 -24.42402 -23.86165 -22.84438 -22.04517 -21.54715 -21.08409 -20.25861 -19.59586 -19.39641 -18.81263 -18.13530 -17.98087 -17.62292 -16.95817 -16.81797 -16.48546 -16.24819 -16.16378 -16.08623 -16.01681 -15.75601 -15.32336 -15.21248 -15.03731 -14.80155 -14.72020 -14.47260 -14.29843 -14.28525 -14.15494 -14.10141 -13.96565 -13.88304 -13.80055 -13.33266 -13.31324 -13.13415 -13.01160 -12.87578 -12.83198 -12.67760 -12.48745 -12.23022 -12.12865 -11.93057 -11.63922 -11.56033 -11.31536 -11.08775 -10.96923 -10.72247 -10.65478 -10.22916 -9.97090 -9.64517 -9.58634 -5.02920 -0.41530 -0.39337 0.07500 0.22585 1.19230 1.49407 1.50569 1.60482 1.76962 1.82324 1.89148 2.03980 2.55623 2.71722 2.80201 3.14669 3.27558 3.32474 3.46094 3.52576 3.58372 3.59471 3.70140 3.78141 3.92581 3.96809 4.03308 4.04744 4.11121 4.18195 4.18664 4.27920 4.30379 4.38749 4.40682 4.46822 4.50069 4.58011 4.66233 4.74420 4.75939 4.84028 4.85457 4.95124 4.99119 5.04328 5.05224 5.06358 5.08729 5.10402 5.20214 5.21677 5.23214 5.34426 5.41854 5.45787 5.60928 6.10075 6.36776 6.38139 6.44765 6.71223 6.71912 7.12088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.157 3.843 4 O -0.496 6.496 5 C -0.153 4.153 6 C -0.060 4.060 7 O -0.539 6.539 8 Si 0.742 3.258 9 C -0.067 4.067 10 C -0.150 4.150 11 C 0.559 3.441 12 O -0.579 6.579 13 N -0.704 5.704 14 C 0.143 3.857 15 H 0.066 0.934 16 C -0.110 4.110 17 C -0.114 4.114 18 C 0.091 3.909 19 H 0.106 0.894 20 O -0.315 6.315 21 C 0.357 3.643 22 N -0.549 5.549 23 C 0.173 3.827 24 C -0.198 4.198 25 C 0.014 3.986 26 C -0.129 4.129 27 C 0.283 3.717 28 N -0.466 5.466 29 C -0.126 4.126 30 C -0.115 4.115 31 C -0.052 4.052 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.127 0.873 37 H 0.385 0.615 38 H -0.291 1.291 39 H -0.290 1.290 40 H 0.130 0.870 41 H 0.417 0.583 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.202 0.798 47 H 0.185 0.815 48 H 0.173 0.827 49 H 0.054 0.946 50 H 0.068 0.932 51 H 0.089 0.911 52 H 0.054 0.946 53 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 -2.950 -6.477 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C 0.112 3.888 4 O -0.310 6.310 5 C -0.154 4.154 6 C -0.170 4.170 7 O -0.347 6.347 8 Si 0.648 3.352 9 C -0.086 4.086 10 C -0.153 4.153 11 C 0.348 3.652 12 O -0.459 6.459 13 N -0.356 5.356 14 C 0.038 3.962 15 H 0.084 0.916 16 C -0.148 4.148 17 C -0.152 4.152 18 C 0.036 3.964 19 H 0.124 0.876 20 O -0.222 6.222 21 C 0.176 3.824 22 N -0.272 5.272 23 C 0.017 3.983 24 C -0.217 4.217 25 C -0.014 4.014 26 C -0.136 4.136 27 C -0.031 4.031 28 N -0.143 5.143 29 C -0.164 4.164 30 C -0.153 4.153 31 C -0.070 4.070 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.272 0.728 36 H 0.145 0.855 37 H 0.234 0.766 38 H -0.218 1.218 39 H -0.218 1.218 40 H 0.147 0.853 41 H 0.256 0.744 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.219 0.781 47 H 0.202 0.798 48 H 0.190 0.810 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.073 0.927 53 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.077 -2.218 -5.472 10.829 hybrid contribution 0.332 -0.308 1.515 1.581 sum -8.746 -2.526 -3.958 9.926 Atomic orbital electron populations 1.20776 0.88162 1.04305 1.03613 1.20460 0.98371 0.91668 1.01463 1.18448 0.88596 0.85974 0.95816 1.84629 1.75450 1.35698 1.35224 1.20481 0.94228 0.95281 1.05377 1.24813 1.09857 0.94132 0.88237 1.86574 1.82901 1.48436 1.16810 0.93960 0.73507 0.77498 0.90229 1.21106 1.00343 0.91100 0.96008 1.19793 0.94434 0.92457 1.08626 1.18394 0.86761 0.84616 0.75428 1.90799 1.15401 1.88107 1.51626 1.45781 1.11095 1.04445 1.74284 1.21040 0.95778 0.82683 0.96670 0.91598 1.21695 0.98633 0.91281 1.03163 1.21572 1.01353 0.98104 0.94179 1.22621 0.95623 0.79533 0.98624 0.87598 1.86291 1.67496 1.32669 1.35734 1.19859 0.89028 0.87074 0.86480 1.67493 1.20101 1.36751 1.02866 1.23472 0.92895 0.89555 0.92397 1.22392 0.99318 0.98454 1.01585 1.21927 0.92778 0.98237 0.88410 1.16144 1.05510 0.97061 0.94842 1.25585 0.92412 0.92529 0.92610 1.81311 1.11870 1.09880 1.11194 1.21818 0.98719 0.94436 1.01447 1.21744 1.01220 0.95676 0.96695 1.21387 0.91491 0.99146 0.95001 0.89823 0.91111 0.89395 0.72818 0.85500 0.76563 1.21812 1.21757 0.85274 0.74431 0.89084 0.88188 0.91876 0.89589 0.78100 0.79751 0.81002 0.92741 0.91279 0.89219 0.92700 0.81670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.86 9.79 71.24 0.70 1.56 16 2 C -0.12 0.43 5.89 -19.81 -0.12 0.31 16 3 C 0.16 -0.06 6.66 22.63 0.15 0.09 16 4 O -0.50 0.64 11.83 -90.30 -1.07 -0.43 16 5 C -0.15 -0.20 5.27 -19.81 -0.10 -0.31 16 6 C -0.06 -0.08 2.38 71.24 0.17 0.09 16 7 O -0.54 -1.19 12.88 -148.98 -1.92 -3.11 16 8 Si 0.74 2.04 30.24 68.60 2.07 4.12 16 9 C -0.07 -0.23 8.20 22.50 0.18 -0.04 16 10 C -0.15 -0.17 5.88 -20.08 -0.12 -0.29 16 11 C 0.56 2.31 7.73 86.72 0.67 2.98 16 12 O -0.58 -7.77 16.00 -3.96 -0.06 -7.83 16 13 N -0.70 2.39 5.03 -445.63 -2.24 0.15 16 14 C 0.14 -0.26 2.45 45.00 0.11 -0.15 16 15 H 0.07 0.29 7.58 -2.39 -0.02 0.27 16 16 C -0.11 0.77 5.39 30.60 0.16 0.94 16 17 C -0.11 0.32 5.57 30.59 0.17 0.49 16 18 C 0.09 -0.04 2.38 30.59 0.07 0.03 16 19 H 0.11 -0.26 6.98 -2.39 -0.02 -0.27 16 20 O -0.32 -1.47 9.20 -87.77 -0.81 -2.28 16 21 C 0.36 0.74 7.47 85.16 0.64 1.38 16 22 N -0.55 1.08 8.63 -307.97 -2.66 -1.58 16 23 C 0.17 -1.50 11.16 84.69 0.95 -0.55 16 24 C -0.20 2.13 10.09 22.32 0.23 2.35 16 25 C 0.01 -0.09 9.90 22.72 0.23 0.14 16 26 C -0.13 -0.15 5.77 -21.10 -0.12 -0.27 16 27 C 0.28 2.21 14.92 88.32 1.32 3.53 16 28 N -0.47 -6.41 18.54 19.01 0.35 -6.06 16 29 C -0.13 -0.11 5.54 30.58 0.17 0.06 16 30 C -0.11 0.13 5.49 30.58 0.17 0.30 16 31 C -0.05 0.25 9.18 22.51 0.21 0.46 16 32 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.07 -0.39 7.51 -2.39 -0.02 -0.40 16 34 H 0.09 -0.93 8.08 -2.39 -0.02 -0.95 16 35 H 0.41 -3.17 9.06 -74.06 -0.67 -3.84 16 36 H 0.13 0.10 7.82 -2.39 -0.02 0.09 16 37 H 0.39 -1.07 8.70 -74.06 -0.64 -1.71 16 38 H -0.29 -2.59 7.11 99.48 0.71 -1.88 16 39 H -0.29 -2.45 6.68 99.48 0.66 -1.79 16 40 H 0.13 0.79 4.43 -2.91 -0.01 0.78 16 41 H 0.42 -4.45 6.62 -92.71 -0.61 -5.06 16 42 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.20 -3.14 8.06 -2.91 -0.02 -3.16 16 47 H 0.19 -3.21 8.06 -2.91 -0.02 -3.23 16 48 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 49 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 50 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 52 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 53 H 0.17 -2.05 6.39 -2.91 -0.02 -2.07 16 Total: 0.00 -30.65 443.88 -1.43 -32.08 By element: Atomic # 1 Polarization: -27.22 SS G_CDS: -0.92 Total: -28.14 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.82 Total: 13.08 kcal Atomic # 7 Polarization: -2.94 SS G_CDS: -4.55 Total: -7.49 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -3.86 Total: -13.64 kcal Atomic # 14 Polarization: 2.04 SS G_CDS: 2.07 Total: 4.12 kcal Total: -30.65 -1.43 -32.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_13287732.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.667 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds