Wall clock time and date at job start Sun Mar 7 2021 07:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39945 * 120.59773 * 149.04187 * 3 2 1 5 5 C 1.38413 * 118.34263 * 179.70169 * 4 3 2 6 6 C 1.38279 * 119.46120 * 0.28172 * 5 4 3 7 7 N 1.31939 * 121.18836 * 359.97438 * 6 5 4 8 8 C 1.32167 * 121.81103 * 359.97438 * 7 6 5 9 9 O 1.35476 * 119.80658 * 180.02562 * 8 7 6 10 10 C 1.42899 * 116.99661 * 0.02562 * 9 8 7 11 11 H 1.09002 * 109.47182 * 329.99121 * 10 9 8 12 12 C 1.52995 * 109.47767 * 89.99589 * 10 9 8 13 13 C 1.52994 * 109.47536 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47108 * 299.99959 * 13 12 10 15 15 H 1.09002 * 109.46867 * 299.99907 * 14 13 12 16 16 N 1.46497 * 109.47110 * 180.02562 * 14 13 12 17 17 C 1.34774 * 120.00294 * 84.99909 * 16 14 13 18 18 O 1.21597 * 119.99842 * 359.97438 * 17 16 14 19 19 C 1.47541 * 120.00348 * 180.02562 * 17 16 14 20 20 C 1.40133 * 120.19341 * 179.72812 * 19 17 16 21 21 O 1.35658 * 120.14789 * 359.97438 * 20 19 17 22 22 C 1.38705 * 119.69866 * 179.77081 * 20 19 17 23 23 C 1.38054 * 120.08391 * 0.49810 * 22 20 19 24 24 C 1.50705 * 119.80411 * 179.72598 * 23 22 20 25 25 O 1.42906 * 109.46959 * 65.02143 * 24 23 22 26 26 Si 1.86297 * 109.46951 * 185.02239 * 24 23 22 27 27 C 1.38543 * 120.39122 * 359.74955 * 23 22 20 28 28 C 1.37787 * 120.29882 * 359.97438 * 27 23 22 29 29 C 1.52992 * 109.47088 * 59.99953 * 14 13 12 30 30 C 1.53004 * 109.47187 * 300.00028 * 29 14 13 31 31 H 1.08002 * 120.83269 * 359.97438 * 4 3 2 32 32 H 1.07994 * 120.27264 * 180.25563 * 5 4 3 33 33 H 1.07997 * 119.40557 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47101 * 300.00285 * 12 10 9 35 35 H 1.09002 * 109.47151 * 59.99514 * 12 10 9 36 36 H 1.08998 * 109.47053 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47265 * 60.00160 * 13 12 10 38 38 H 0.97007 * 119.99957 * 265.00337 * 16 14 13 39 39 H 0.96703 * 114.00004 * 90.00670 * 21 20 19 40 40 H 1.07999 * 119.95983 * 180.22910 * 22 20 19 41 41 H 1.08996 * 109.47243 * 305.02613 * 24 23 22 42 42 H 0.96698 * 113.99689 * 60.00091 * 25 24 23 43 43 H 1.48499 * 110.00090 * 58.68045 * 26 24 23 44 44 H 1.48504 * 109.99968 * 180.02562 * 26 24 23 45 45 H 1.07999 * 119.84881 * 180.02562 * 27 23 22 46 46 H 1.08004 * 120.04271 * 180.02562 * 28 27 23 47 47 H 1.08998 * 109.47559 * 180.02562 * 29 14 13 48 48 H 1.08999 * 109.47543 * 59.99749 * 29 14 13 49 49 H 1.08997 * 109.47241 * 299.99798 * 30 29 14 50 50 H 1.08998 * 109.47055 * 179.97438 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2799 1.0339 -0.6197 5 6 4.6630 0.9911 -0.5862 6 6 5.2957 -0.0631 0.0466 7 7 4.6047 -1.0297 0.6201 8 6 3.2830 -1.0371 0.6181 9 8 2.6143 -2.0500 1.2200 10 6 3.4014 -3.0719 1.8349 11 1 4.3466 -3.1729 1.3014 12 6 3.6760 -2.6967 3.2925 13 6 4.5182 -3.7911 3.9509 14 6 3.7591 -5.1186 3.9003 15 1 2.8139 -5.0172 4.4337 16 7 4.5653 -6.1665 4.5314 17 6 4.5195 -6.3395 5.8672 18 8 3.8093 -5.6255 6.5487 19 6 5.3318 -7.3944 6.5028 20 6 5.2916 -7.5741 7.8920 21 8 4.5055 -6.7782 8.6594 22 6 6.0558 -8.5722 8.4783 23 6 6.8599 -9.3773 7.6966 24 6 7.6924 -10.4558 8.3409 25 8 6.8324 -11.4381 8.9220 26 14 8.7723 -11.2594 7.0530 27 6 6.9065 -9.1995 6.3234 28 6 6.1496 -8.2167 5.7237 29 6 3.4846 -5.4939 2.4428 30 6 2.6424 -4.3994 1.7843 31 1 2.7630 1.8469 -1.1079 32 1 5.2433 1.7745 -1.0509 33 1 6.3748 -0.0954 0.0725 34 1 4.2164 -1.7507 3.3285 35 1 2.7308 -2.5957 3.8259 36 1 4.7134 -3.5240 4.9895 37 1 5.4634 -3.8925 3.4177 38 1 5.1323 -6.7358 3.9878 39 1 3.6093 -7.1178 8.7889 40 1 6.0251 -8.7168 9.5481 41 1 8.3186 -10.0163 9.1173 42 1 6.2454 -11.8716 8.2875 43 1 9.6490 -10.2423 6.4188 44 1 9.5979 -12.3252 7.6756 45 1 7.5383 -9.8346 5.7203 46 1 6.1887 -8.0819 4.6528 47 1 2.9435 -6.4394 2.4067 48 1 4.4298 -5.5953 1.9094 49 1 1.6971 -4.2980 2.3175 50 1 2.4472 -4.6665 0.7457 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_13422076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:10 Heat of formation + Delta-G solvation = -50.598390 kcal Electronic energy + Delta-G solvation = -35652.316293 eV Core-core repulsion = 30804.819084 eV Total energy + Delta-G solvation = -4847.497209 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.156 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.01000 -41.67487 -40.47918 -39.61792 -38.52471 -37.90116 -37.73121 -37.13212 -35.01423 -33.73524 -32.88931 -31.97151 -31.76032 -31.09956 -29.73080 -27.36011 -25.74766 -24.92300 -24.02477 -23.86001 -23.60090 -22.68157 -21.53941 -21.21991 -20.29073 -19.48174 -19.36242 -18.69321 -18.18594 -17.99039 -17.54596 -16.93646 -16.71072 -16.50370 -16.33737 -16.18896 -16.06860 -15.73050 -15.65798 -15.31839 -15.23332 -15.04731 -14.78341 -14.73056 -14.48565 -14.40221 -14.25596 -14.15949 -13.96803 -13.84002 -13.81860 -13.33992 -13.23954 -13.12039 -13.00689 -12.89524 -12.73479 -12.30048 -12.24308 -12.19433 -12.11843 -11.68040 -11.55725 -11.30522 -10.97894 -10.93089 -10.72997 -10.47519 -10.23856 -10.00482 -9.77240 -9.59646 -4.97625 -0.42367 -0.40664 0.15557 0.21623 1.29535 1.50520 1.66243 1.73577 1.77057 1.88871 2.01576 2.06583 2.58909 2.71077 2.79405 3.12275 3.26653 3.44486 3.52269 3.57080 3.59172 3.69645 3.76291 3.81287 3.93387 3.95810 4.03015 4.09975 4.12017 4.17679 4.27733 4.28541 4.30671 4.37760 4.37928 4.46941 4.58574 4.61335 4.75639 4.77225 4.84929 4.94298 4.98576 5.03142 5.04260 5.05802 5.09075 5.12949 5.21537 5.22556 5.25355 5.43689 5.45778 5.61016 6.09213 6.36293 6.49879 6.70197 6.70972 6.75647 7.19064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.283 3.717 3 C -0.128 4.128 4 C 0.014 3.986 5 C -0.198 4.198 6 C 0.172 3.828 7 N -0.549 5.549 8 C 0.357 3.643 9 O -0.315 6.315 10 C 0.092 3.908 11 H 0.106 0.894 12 C -0.126 4.126 13 C -0.115 4.115 14 C 0.145 3.855 15 H 0.065 0.935 16 N -0.706 5.706 17 C 0.556 3.444 18 O -0.565 6.565 19 C -0.179 4.179 20 C 0.150 3.850 21 O -0.500 6.500 22 C -0.143 4.143 23 C -0.074 4.074 24 C -0.087 4.087 25 O -0.555 6.555 26 Si 0.793 3.207 27 C -0.129 4.129 28 C -0.051 4.051 29 C -0.109 4.109 30 C -0.114 4.114 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.417 0.583 39 H 0.407 0.593 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.397 0.603 43 H -0.277 1.277 44 H -0.304 1.304 45 H 0.167 0.833 46 H 0.173 0.827 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.063 0.937 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 -3.714 -9.039 12.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.031 4.031 3 C -0.135 4.135 4 C -0.013 4.013 5 C -0.217 4.217 6 C 0.016 3.984 7 N -0.273 5.273 8 C 0.175 3.825 9 O -0.222 6.222 10 C 0.036 3.964 11 H 0.124 0.876 12 C -0.164 4.164 13 C -0.154 4.154 14 C 0.041 3.959 15 H 0.083 0.917 16 N -0.359 5.359 17 C 0.344 3.656 18 O -0.445 6.445 19 C -0.183 4.183 20 C 0.104 3.896 21 O -0.313 6.313 22 C -0.161 4.161 23 C -0.075 4.075 24 C -0.195 4.195 25 O -0.363 6.363 26 Si 0.698 3.302 27 C -0.146 4.146 28 C -0.069 4.069 29 C -0.147 4.147 30 C -0.152 4.152 31 H 0.191 0.809 32 H 0.203 0.797 33 H 0.218 0.782 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.255 0.745 39 H 0.266 0.734 40 H 0.148 0.852 41 H 0.123 0.877 42 H 0.248 0.752 43 H -0.203 1.203 44 H -0.233 1.233 45 H 0.184 0.816 46 H 0.191 0.809 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.082 0.918 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.716 -3.606 -7.794 11.544 hybrid contribution -0.628 0.884 0.783 1.338 sum 7.087 -2.722 -7.010 10.334 Atomic orbital electron populations 1.81281 1.13350 1.09108 1.10415 1.25542 0.92530 0.92606 0.92450 1.16145 0.84468 1.00430 1.12483 1.21932 0.94917 0.94083 0.90398 1.22391 0.93838 1.02051 1.03464 1.23463 1.01961 0.86342 0.86623 1.67494 1.05108 1.30464 1.24229 1.19865 0.88164 0.86435 0.88005 1.86291 1.36631 1.32428 1.66802 1.22621 0.95830 0.85288 0.92615 0.87638 1.21819 1.00304 0.99280 0.95002 1.21745 0.99498 0.93747 1.00374 1.20990 0.94069 0.86573 0.94294 0.91661 1.45778 1.47249 1.36546 1.06343 1.18337 0.81359 0.83214 0.82688 1.90822 1.42168 1.47741 1.63750 1.20459 1.03699 1.00526 0.93637 1.18783 0.93208 0.89276 0.88335 1.84720 1.28065 1.48406 1.70116 1.21333 0.98863 0.94685 1.01240 1.20576 0.96151 0.96393 0.94349 1.25453 0.97811 0.90332 1.05945 1.86506 1.55778 1.54112 1.39933 0.93684 0.78809 0.78022 0.79712 1.21250 1.00579 0.99458 0.93311 1.21539 0.92142 0.91991 1.01252 1.21692 1.02169 0.98619 0.92183 1.21581 0.99053 0.91783 1.02776 0.80949 0.79746 0.78172 0.91528 0.92758 0.93362 0.89388 0.74455 0.73369 0.85160 0.87722 0.75237 1.20339 1.23254 0.81581 0.80939 0.88751 0.88211 0.91820 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.43 18.54 19.00 0.35 -6.08 16 2 C 0.28 2.26 14.91 88.33 1.32 3.58 16 3 C -0.13 -0.19 5.77 -21.10 -0.12 -0.31 16 4 C 0.01 -0.09 9.90 22.73 0.23 0.14 16 5 C -0.20 2.05 10.09 22.32 0.23 2.28 16 6 C 0.17 -1.40 11.16 84.69 0.95 -0.46 16 7 N -0.55 0.78 8.64 -307.97 -2.66 -1.88 16 8 C 0.36 0.89 7.47 85.16 0.64 1.52 16 9 O -0.32 -1.57 9.20 -87.76 -0.81 -2.38 16 10 C 0.09 0.00 2.38 30.59 0.07 0.07 16 11 H 0.11 -0.21 6.98 -2.39 -0.02 -0.22 16 12 C -0.13 -0.23 5.54 30.59 0.17 -0.06 16 13 C -0.11 -0.02 5.49 30.59 0.17 0.15 16 14 C 0.15 -0.22 2.45 44.99 0.11 -0.11 16 15 H 0.07 0.31 7.58 -2.39 -0.02 0.29 16 16 N -0.71 2.27 5.03 -445.70 -2.24 0.03 16 17 C 0.56 2.64 7.73 86.70 0.67 3.31 16 18 O -0.57 -8.03 14.82 16.90 0.25 -7.78 16 19 C -0.18 -0.26 5.89 -20.01 -0.12 -0.38 16 20 C 0.15 0.74 6.72 22.84 0.15 0.90 16 21 O -0.50 -4.25 11.58 -68.82 -0.80 -5.04 16 22 C -0.14 -0.31 9.60 22.34 0.21 -0.09 16 23 C -0.07 0.19 5.35 -19.83 -0.11 0.09 16 24 C -0.09 0.27 2.79 71.24 0.20 0.47 16 25 O -0.56 1.07 12.83 -148.98 -1.91 -0.85 16 26 Si 0.79 -5.03 29.78 68.60 2.04 -2.99 16 27 C -0.13 0.93 8.64 22.24 0.19 1.12 16 28 C -0.05 0.34 9.53 22.52 0.21 0.56 16 29 C -0.11 0.79 5.39 30.59 0.16 0.95 16 30 C -0.11 0.32 5.57 30.60 0.17 0.49 16 31 H 0.17 -1.86 8.06 -2.91 -0.02 -1.88 16 32 H 0.19 -3.14 8.06 -2.91 -0.02 -3.17 16 33 H 0.20 -3.01 8.06 -2.91 -0.02 -3.03 16 34 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.42 -4.58 6.63 -92.70 -0.62 -5.20 16 39 H 0.41 0.65 9.06 -74.05 -0.67 -0.02 16 40 H 0.13 0.40 8.06 -2.91 -0.02 0.37 16 41 H 0.11 -0.10 7.96 -2.39 -0.02 -0.12 16 42 H 0.40 -4.25 8.70 -74.06 -0.64 -4.90 16 43 H -0.28 0.71 7.11 99.48 0.71 1.42 16 44 H -0.30 -0.72 7.11 99.48 0.71 -0.02 16 45 H 0.17 -2.25 4.88 -2.91 -0.01 -2.26 16 46 H 0.17 -2.60 6.40 -2.91 -0.02 -2.62 16 47 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H 0.10 -1.15 8.14 -2.39 -0.02 -1.17 16 49 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 50 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -34.96 422.59 -1.12 -36.08 By element: Atomic # 1 Polarization: -22.47 SS G_CDS: -0.85 Total: -23.32 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 5.50 Total: 14.21 kcal Atomic # 7 Polarization: -3.39 SS G_CDS: -4.55 Total: -7.93 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -3.27 Total: -16.05 kcal Atomic # 14 Polarization: -5.03 SS G_CDS: 2.04 Total: -2.99 kcal Total: -34.96 -1.12 -36.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_13422076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.517 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds