Wall clock time and date at job start Sun Mar 7 2021 07:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37868 * 126.46082 * 2 1 4 4 C 1.46686 * 126.23224 * 0.02562 * 3 2 1 5 5 O 1.21699 * 119.99772 * 0.02562 * 4 3 2 6 6 N 1.34767 * 119.99957 * 179.97438 * 4 3 2 7 7 C 1.46506 * 120.00003 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.47073 * 325.00393 * 7 6 4 9 9 C 1.53002 * 109.47035 * 85.00075 * 7 6 4 10 10 C 1.52996 * 109.46969 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47131 * 299.99938 * 10 9 7 12 12 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 13 13 O 1.42905 * 109.47264 * 180.02562 * 11 10 9 14 14 C 1.35476 * 116.99660 * 89.99966 * 13 11 10 15 15 N 1.32162 * 119.80608 * 359.72903 * 14 13 11 16 16 C 1.31939 * 121.80947 * 179.75562 * 15 14 13 17 17 C 1.38278 * 121.19229 * 0.52191 * 16 15 14 18 18 C 1.38423 * 119.45734 * 359.74943 * 17 16 15 19 19 C 1.39948 * 118.34133 * 359.97438 * 18 17 16 20 20 C 1.43193 * 120.59802 * 180.02562 * 19 18 17 21 21 N 9.75237 * 137.43981 * 180.34733 * 4 1 2 22 22 C 1.53002 * 109.47143 * 60.00169 * 11 10 9 23 23 C 1.52996 * 109.46969 * 299.99930 * 22 11 10 24 24 N 1.37648 * 107.53801 * 180.26517 * 3 2 1 25 25 C 1.35536 * 108.63912 * 359.62650 * 24 3 2 26 26 C 1.50703 * 125.56299 * 180.11144 * 25 24 3 27 27 O 1.42901 * 109.47199 * 300.28722 * 26 25 24 28 28 Si 1.86296 * 109.47173 * 180.28475 * 26 25 24 29 29 C 1.35453 * 108.87491 * 0.37572 * 25 24 3 30 30 H 1.09000 * 109.47205 * 89.99881 * 1 2 3 31 31 H 1.09005 * 109.47243 * 209.99908 * 1 2 3 32 32 H 1.09000 * 109.46783 * 329.99394 * 1 2 3 33 33 H 0.96996 * 120.00319 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.47059 * 300.00628 * 9 7 6 35 35 H 1.09004 * 109.46930 * 60.00230 * 9 7 6 36 36 H 1.09001 * 109.46997 * 180.02562 * 10 9 7 37 37 H 1.08992 * 109.47534 * 60.00418 * 10 9 7 38 38 H 1.07998 * 119.40912 * 180.29170 * 16 15 14 39 39 H 1.07998 * 120.27569 * 179.72518 * 17 16 15 40 40 H 1.07993 * 120.82657 * 180.02562 * 18 17 16 41 41 H 1.09004 * 109.46930 * 59.99935 * 22 11 10 42 42 H 1.09004 * 109.47059 * 179.97438 * 22 11 10 43 43 H 1.09001 * 109.46997 * 179.97438 * 23 22 11 44 44 H 1.08996 * 109.47452 * 300.00062 * 23 22 11 45 45 H 0.96997 * 125.68338 * 179.74183 * 24 3 2 46 46 H 1.09008 * 109.46882 * 60.28314 * 26 25 24 47 47 H 0.96697 * 113.99511 * 299.99765 * 27 26 25 48 48 H 1.48507 * 109.99827 * 180.02562 * 28 26 25 49 49 H 1.48501 * 110.00090 * 301.31841 * 28 26 25 50 50 H 1.07996 * 126.06520 * 179.74456 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1088 0.0000 4 6 1.8899 2.5093 0.0005 5 8 0.7027 2.7766 0.0015 6 7 2.8037 3.4998 0.0010 7 6 2.3679 4.8985 0.0009 8 1 1.4563 4.9950 -0.5888 9 6 2.0956 5.3479 1.4379 10 6 1.6399 6.8084 1.4378 11 6 2.7361 7.6847 0.8285 12 1 3.6478 7.5886 1.4181 13 8 2.3107 9.0489 0.8289 14 6 2.6146 9.7876 1.9232 15 7 3.2715 9.2341 2.9276 16 6 3.5919 9.9176 4.0097 17 6 3.2429 11.2487 4.1455 18 6 2.5493 11.8780 3.1262 19 6 2.2252 11.1346 1.9856 20 6 1.5091 11.7374 0.9019 21 7 0.9427 12.2154 0.0426 22 6 3.0084 7.2353 -0.6085 23 6 3.4641 5.7748 -0.6084 24 7 3.6284 0.6624 -0.0061 25 6 3.6217 -0.6929 -0.0014 26 6 4.8433 -1.5754 -0.0031 27 8 5.6228 -1.3076 -1.1705 28 14 4.3181 -3.3628 -0.0037 29 6 2.3379 -1.1248 -0.0008 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 3.7500 3.2867 0.0006 34 1 1.3144 4.7238 1.8719 35 1 3.0072 5.2514 2.0277 36 1 1.4463 7.1287 2.4616 37 1 0.7282 6.9045 0.8483 38 1 4.1334 9.4277 4.8054 39 1 3.5090 11.7929 5.0396 40 1 2.2659 12.9168 3.2088 41 1 2.0966 7.3314 -1.1981 42 1 3.7891 7.8599 -1.0427 43 1 3.6577 5.4545 -1.6321 44 1 4.3758 5.6787 -0.0187 45 1 4.4191 1.2242 -0.0110 46 1 5.4396 -1.3721 0.8864 47 1 5.1544 -1.4671 -2.0012 48 1 5.5138 -4.2435 -0.0048 49 1 3.4802 -3.6464 1.1891 50 1 2.0136 -2.1549 -0.0014 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_13940406.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:38 Heat of formation + Delta-G solvation = 0.894949 kcal Electronic energy + Delta-G solvation = -34216.105925 eV Core-core repulsion = 29596.786437 eV Total energy + Delta-G solvation = -4619.319488 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.61591 -41.99469 -40.81533 -39.72317 -38.10598 -37.77277 -37.65581 -35.19117 -33.75761 -33.49678 -32.14272 -31.96414 -31.59377 -29.77877 -28.17141 -26.79357 -25.75903 -24.85418 -23.99503 -23.31789 -22.19024 -21.57331 -21.40911 -20.50322 -20.17790 -19.48953 -19.40982 -18.15665 -17.93751 -17.41021 -16.98128 -16.70626 -16.41651 -16.22542 -16.14514 -15.74918 -15.40359 -15.30742 -15.14734 -15.11411 -14.88186 -14.59400 -14.46712 -14.37506 -14.26531 -14.18095 -14.01386 -13.89431 -13.87490 -13.63329 -13.53793 -13.38477 -13.15862 -13.02771 -12.97466 -12.77274 -12.29127 -12.19832 -12.15496 -11.99162 -11.61134 -11.36114 -11.10847 -10.99935 -10.75741 -10.66307 -10.27494 -9.82041 -9.61899 -9.19313 -4.90720 -0.44203 0.19615 0.30106 1.23469 1.49536 1.52770 1.71924 1.74057 1.87782 1.91945 2.01827 2.22557 2.25008 2.69636 2.77482 3.24305 3.46340 3.48666 3.54237 3.57179 3.71633 3.80024 3.88205 3.93867 3.99790 4.06251 4.13319 4.15009 4.22938 4.23225 4.27582 4.32861 4.43074 4.44339 4.53395 4.70307 4.71335 4.79032 4.82416 4.90007 4.92043 4.93522 4.99077 5.00644 5.06965 5.12713 5.14155 5.17053 5.31356 5.39380 5.42173 5.62880 5.85020 6.06429 6.30894 6.34804 6.47941 6.67600 6.68835 7.06638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.086 4.086 3 C -0.070 4.070 4 C 0.588 3.412 5 O -0.562 6.562 6 N -0.713 5.713 7 C 0.146 3.854 8 H 0.070 0.930 9 C -0.114 4.114 10 C -0.125 4.125 11 C 0.092 3.908 12 H 0.103 0.897 13 O -0.314 6.314 14 C 0.356 3.644 15 N -0.550 5.550 16 C 0.172 3.828 17 C -0.197 4.197 18 C 0.014 3.986 19 C -0.128 4.128 20 C 0.284 3.716 21 N -0.464 5.464 22 C -0.113 4.113 23 C -0.110 4.110 24 N -0.512 5.512 25 C 0.035 3.965 26 C -0.052 4.052 27 O -0.554 6.554 28 Si 0.799 3.201 29 C -0.209 4.209 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.201 0.799 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.428 0.572 46 H 0.118 0.882 47 H 0.399 0.601 48 H -0.294 1.294 49 H -0.286 1.286 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -2.159 4.427 9.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.183 4.183 4 C 0.377 3.623 5 O -0.440 6.440 6 N -0.364 5.364 7 C 0.042 3.958 8 H 0.088 0.912 9 C -0.153 4.153 10 C -0.163 4.163 11 C 0.037 3.963 12 H 0.121 0.879 13 O -0.221 6.221 14 C 0.175 3.825 15 N -0.274 5.274 16 C 0.016 3.984 17 C -0.217 4.217 18 C -0.013 4.013 19 C -0.135 4.135 20 C -0.031 4.031 21 N -0.141 5.141 22 C -0.151 4.151 23 C -0.148 4.148 24 N -0.109 5.109 25 C -0.084 4.084 26 C -0.162 4.162 27 O -0.361 6.361 28 Si 0.704 3.296 29 C -0.233 4.233 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.218 0.782 39 H 0.203 0.797 40 H 0.191 0.809 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.268 0.732 46 H 0.135 0.865 47 H 0.249 0.751 48 H -0.222 1.222 49 H -0.212 1.212 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.830 -2.495 3.598 8.113 hybrid contribution 0.512 1.363 0.649 1.594 sum 7.342 -1.132 4.247 8.557 Atomic orbital electron populations 1.20333 0.89319 1.02696 1.02420 1.20159 0.96242 0.91385 1.01715 1.20121 0.84519 0.93033 1.20624 1.17214 0.85628 0.83722 0.75735 1.90829 1.17642 1.83739 1.51822 1.45777 1.09709 1.05644 1.75307 1.21021 0.98728 0.79504 0.96585 0.91158 1.21739 1.02243 0.94542 0.96739 1.21815 0.98365 0.94680 1.01475 1.22600 0.98717 0.76431 0.98598 0.87877 1.86289 1.74083 1.25771 1.35950 1.19863 0.88975 0.87225 0.86451 1.67490 1.17394 1.39648 1.02844 1.23455 0.90776 0.91702 0.92515 1.22395 1.01513 0.96220 1.01563 1.21940 0.90112 1.00864 0.88379 1.16143 1.10208 0.92252 0.94862 1.25483 0.92454 0.92585 0.92611 1.81232 1.11626 1.10029 1.11168 1.21563 1.02943 0.96397 0.94222 1.21684 0.97965 0.92122 1.03004 1.41787 1.06760 1.06707 1.55678 1.21286 0.96996 0.83413 1.06726 1.25016 0.90736 1.08824 0.91639 1.86473 1.42002 1.91279 1.16385 0.92991 0.79023 0.70731 0.86897 1.20822 0.90876 0.99481 1.12098 0.91181 0.90394 0.92267 0.75464 0.92773 0.89770 0.91329 0.92413 0.78231 0.79717 0.80892 0.91555 0.89576 0.89135 0.88679 0.73211 0.86480 0.75081 1.22169 1.21245 0.81693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 9.83 71.24 0.70 0.25 16 2 C -0.09 -0.39 6.21 -19.57 -0.12 -0.51 16 3 C -0.07 -0.23 7.06 40.35 0.28 0.05 16 4 C 0.59 3.28 7.75 86.45 0.67 3.95 16 5 O -0.56 -7.61 14.46 -4.34 -0.06 -7.67 16 6 N -0.71 1.26 5.07 -446.48 -2.27 -1.01 16 7 C 0.15 -0.11 2.45 44.99 0.11 0.00 16 8 H 0.07 0.34 7.58 -2.38 -0.02 0.32 16 9 C -0.11 -0.02 5.49 30.59 0.17 0.15 16 10 C -0.12 -0.21 5.54 30.59 0.17 -0.04 16 11 C 0.09 0.04 2.38 30.59 0.07 0.11 16 12 H 0.10 -0.12 6.99 -2.38 -0.02 -0.14 16 13 O -0.31 -1.65 9.20 -87.76 -0.81 -2.45 16 14 C 0.36 0.96 7.47 85.16 0.64 1.60 16 15 N -0.55 0.61 8.64 -307.98 -2.66 -2.05 16 16 C 0.17 -1.35 11.16 84.69 0.95 -0.41 16 17 C -0.20 2.02 10.09 22.32 0.23 2.24 16 18 C 0.01 -0.09 9.90 22.73 0.23 0.14 16 19 C -0.13 -0.20 5.77 -21.10 -0.12 -0.32 16 20 C 0.28 2.28 14.91 88.34 1.32 3.59 16 21 N -0.46 -6.44 18.53 18.99 0.35 -6.09 16 22 C -0.11 0.23 5.57 30.59 0.17 0.40 16 23 C -0.11 0.63 5.39 30.59 0.16 0.80 16 24 N -0.51 1.41 5.99 -171.92 -1.03 0.38 16 25 C 0.03 -0.09 6.47 41.34 0.27 0.18 16 26 C -0.05 0.26 3.08 71.24 0.22 0.48 16 27 O -0.55 2.79 12.88 -148.98 -1.92 0.87 16 28 Si 0.80 -4.19 30.54 68.60 2.10 -2.09 16 29 C -0.21 0.02 9.27 22.01 0.20 0.23 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.06 0.56 6.48 -2.39 -0.02 0.55 16 33 H 0.41 -3.35 7.73 -92.71 -0.72 -4.07 16 34 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 36 H 0.07 0.19 8.14 -2.39 -0.02 0.18 16 37 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.20 -2.93 8.06 -2.91 -0.02 -2.95 16 39 H 0.19 -3.12 8.06 -2.91 -0.02 -3.15 16 40 H 0.17 -1.86 8.06 -2.91 -0.02 -1.89 16 41 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 42 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 45 H 0.43 -3.47 8.19 -92.71 -0.76 -4.23 16 46 H 0.12 -0.60 7.96 -2.38 -0.02 -0.62 16 47 H 0.40 -4.77 8.70 -74.06 -0.64 -5.41 16 48 H -0.29 -0.51 7.11 99.48 0.71 0.19 16 49 H -0.29 -0.13 7.11 99.48 0.71 0.58 16 50 H 0.17 -0.69 6.17 -2.91 -0.02 -0.71 16 Total: 0.00 -28.67 420.73 -1.05 -29.72 By element: Atomic # 1 Polarization: -21.44 SS G_CDS: -1.06 Total: -22.50 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.31 Total: 12.89 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: -5.60 Total: -8.77 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -2.79 Total: -9.25 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.10 Total: -2.09 kcal Total: -28.67 -1.05 -29.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_13940406.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.616 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds