Wall clock time and date at job start Sun Mar 7 2021 07:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39946 * 120.60166 * 71.13921 * 3 2 1 5 5 C 1.38411 * 118.34464 * 180.02562 * 4 3 2 6 6 C 1.38281 * 119.45869 * 0.02562 * 5 4 3 7 7 N 1.31933 * 121.19386 * 359.97438 * 6 5 4 8 8 C 1.32174 * 121.80445 * 359.97438 * 7 6 5 9 9 O 1.35481 * 119.79605 * 179.72265 * 8 7 6 10 10 C 1.42898 * 117.00388 * 0.02562 * 9 8 7 11 11 H 1.08997 * 109.46551 * 329.99277 * 10 9 8 12 12 C 1.52998 * 109.47162 * 89.99758 * 10 9 8 13 13 C 1.53005 * 109.46818 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47120 * 299.99656 * 13 12 10 15 15 H 1.09001 * 109.47690 * 300.00238 * 14 13 12 16 16 N 1.46501 * 109.47416 * 179.97438 * 14 13 12 17 17 C 1.34782 * 119.99624 * 84.99889 * 16 14 13 18 18 O 1.21278 * 120.00092 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99655 * 180.02562 * 17 16 14 20 20 C 1.50698 * 109.46770 * 179.97438 * 19 17 16 21 21 C 1.34841 * 125.89264 * 274.68876 * 20 19 17 22 22 C 1.40898 * 107.42003 * 179.88939 * 21 20 19 23 23 C 1.34847 * 107.41270 * 0.37618 * 22 21 20 24 24 C 1.50699 * 125.89147 * 179.80829 * 23 22 21 25 25 O 1.42901 * 109.47448 * 119.95730 * 24 23 22 26 26 Si 1.86303 * 109.46818 * 359.95631 * 24 23 22 27 27 N 1.36346 * 108.22299 * 359.77285 * 23 22 21 28 28 C 1.53000 * 109.47164 * 60.00107 * 14 13 12 29 29 C 1.52991 * 109.47389 * 300.00068 * 28 14 13 30 30 H 1.08002 * 120.82534 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.27229 * 180.02562 * 5 4 3 32 32 H 1.08005 * 119.40146 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46843 * 299.99623 * 12 10 9 34 34 H 1.08997 * 109.47780 * 60.00271 * 12 10 9 35 35 H 1.09002 * 109.46585 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47034 * 60.00296 * 13 12 10 37 37 H 0.96998 * 120.00368 * 265.00346 * 16 14 13 38 38 H 1.09004 * 109.47091 * 299.99996 * 19 17 16 39 39 H 1.09000 * 109.47381 * 59.99772 * 19 17 16 40 40 H 1.08001 * 126.29474 * 0.02562 * 21 20 19 41 41 H 1.08000 * 126.29381 * 180.16785 * 22 21 20 42 42 H 1.09008 * 109.47193 * 239.96056 * 24 23 22 43 43 H 0.96700 * 113.99707 * 180.02562 * 25 24 23 44 44 H 1.48502 * 109.99993 * 298.68116 * 26 24 23 45 45 H 1.48500 * 109.99906 * 60.00311 * 26 24 23 46 46 H 0.96998 * 125.63446 * 180.02562 * 27 23 22 47 47 H 1.09002 * 109.47438 * 179.97438 * 28 14 13 48 48 H 1.09004 * 109.47028 * 60.00223 * 28 14 13 49 49 H 1.09004 * 109.47163 * 300.00073 * 29 28 14 50 50 H 1.08997 * 109.47822 * 179.97438 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2806 -0.3884 -1.1399 5 6 4.6636 -0.3707 -1.0881 6 6 5.2955 0.0261 0.0761 7 7 4.6040 0.3891 1.1394 8 6 3.2822 0.3914 1.1433 9 8 2.6129 0.7665 2.2599 10 6 3.3994 1.1459 3.3911 11 1 4.3421 0.5990 3.3779 12 6 3.6806 2.6488 3.3357 13 6 4.5232 3.0548 4.5466 14 6 3.7612 2.7257 5.8317 15 1 2.8183 3.2725 5.8453 16 7 4.5682 3.1139 6.9911 17 6 4.5284 4.3821 7.4456 18 8 3.8242 5.2018 6.8950 19 6 5.3589 4.7816 8.6380 20 6 5.1357 6.2412 8.9392 21 6 5.7855 7.2749 8.3669 22 6 5.2723 8.4598 8.9307 23 6 4.3344 8.1046 9.8321 24 6 3.5232 9.0486 10.6816 25 8 2.1339 8.8697 10.3988 26 14 4.0135 10.8049 10.2997 27 7 4.2461 6.7440 9.8419 28 6 3.4798 1.2228 5.8870 29 6 2.6373 0.8167 4.6763 30 1 2.7641 -0.6949 -2.0376 31 1 5.2445 -0.6644 -1.9499 32 1 6.3748 0.0400 0.1153 33 1 4.2240 2.8832 2.4203 34 1 2.7379 3.1957 3.3489 35 1 4.7240 4.1255 4.5068 36 1 5.4661 2.5080 4.5329 37 1 5.1311 2.4582 7.4317 38 1 5.0670 4.1833 9.5011 39 1 6.4134 4.6132 8.4191 40 1 6.5559 7.2072 7.6131 41 1 5.5768 9.4672 8.6881 42 1 3.7092 8.8404 11.7353 43 1 1.5508 9.4469 10.9107 44 1 5.4487 11.0125 10.6198 45 1 3.7647 11.1014 8.8661 46 1 3.6488 6.2205 10.3987 47 1 2.9373 0.9881 6.8028 48 1 4.4226 0.6759 5.8735 49 1 1.6945 1.3635 4.6898 50 1 2.4372 -0.2541 4.7154 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_14644196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:15:42 Heat of formation + Delta-G solvation = 2.081622 kcal Electronic energy + Delta-G solvation = -33799.718949 eV Core-core repulsion = 29180.450919 eV Total energy + Delta-G solvation = -4619.268030 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.168 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.45799 -42.00222 -40.97424 -39.80400 -38.10073 -37.75880 -37.67755 -34.98051 -33.75672 -33.30259 -32.11003 -32.01448 -31.83580 -30.26294 -28.90567 -25.78260 -25.37668 -24.68733 -23.95775 -23.07220 -21.79036 -21.50972 -21.42658 -20.95515 -20.27703 -19.43212 -18.49778 -18.41826 -18.13484 -17.91038 -17.25213 -16.93624 -16.36347 -16.24191 -16.05806 -15.76347 -15.35908 -15.22840 -15.16349 -15.09216 -14.95450 -14.81348 -14.55869 -14.42147 -14.31016 -14.18434 -14.12875 -13.99288 -13.87484 -13.53366 -13.45498 -13.37258 -13.14430 -12.97685 -12.95845 -12.73514 -12.56962 -12.27475 -12.16193 -12.06228 -11.59597 -11.33733 -11.01612 -10.99774 -10.75268 -10.46638 -10.12978 -9.97569 -9.61965 -9.08181 -5.00099 -0.44398 0.19561 0.93365 1.25732 1.48105 1.58678 1.64096 1.70901 1.78048 1.86622 2.04090 2.21445 2.39325 2.68956 2.77239 3.24461 3.43246 3.49837 3.55040 3.60171 3.73406 3.89408 3.90065 3.92008 3.95106 4.04273 4.08748 4.14941 4.15266 4.23216 4.24794 4.28920 4.31581 4.34159 4.45414 4.53750 4.58401 4.64447 4.72408 4.81964 4.92248 4.94672 4.99997 5.01837 5.04610 5.07322 5.11545 5.16546 5.19899 5.42323 5.46386 5.82441 5.95271 6.06472 6.33932 6.49668 6.59245 6.68844 6.82991 7.25483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.283 3.717 3 C -0.129 4.129 4 C 0.014 3.986 5 C -0.197 4.197 6 C 0.173 3.827 7 N -0.549 5.549 8 C 0.356 3.644 9 O -0.316 6.316 10 C 0.093 3.907 11 H 0.107 0.893 12 C -0.126 4.126 13 C -0.114 4.114 14 C 0.144 3.856 15 H 0.058 0.942 16 N -0.710 5.710 17 C 0.510 3.490 18 O -0.580 6.580 19 C -0.065 4.065 20 C 0.038 3.962 21 C -0.201 4.201 22 C -0.229 4.229 23 C 0.018 3.982 24 C -0.060 4.060 25 O -0.571 6.571 26 Si 0.814 3.186 27 N -0.530 5.530 28 C -0.108 4.108 29 C -0.115 4.115 30 H 0.174 0.826 31 H 0.186 0.814 32 H 0.202 0.798 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.421 0.579 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.406 0.594 44 H -0.286 1.286 45 H -0.310 1.310 46 H 0.423 0.577 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.060 0.940 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.666 -5.285 4.140 10.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.032 4.032 3 C -0.135 4.135 4 C -0.013 4.013 5 C -0.217 4.217 6 C 0.016 3.984 7 N -0.273 5.273 8 C 0.175 3.825 9 O -0.223 6.223 10 C 0.037 3.963 11 H 0.124 0.876 12 C -0.165 4.165 13 C -0.152 4.152 14 C 0.039 3.961 15 H 0.076 0.924 16 N -0.363 5.363 17 C 0.297 3.703 18 O -0.459 6.459 19 C -0.105 4.105 20 C -0.076 4.076 21 C -0.225 4.225 22 C -0.254 4.254 23 C -0.096 4.096 24 C -0.169 4.169 25 O -0.381 6.381 26 Si 0.720 3.280 27 N -0.126 5.126 28 C -0.146 4.146 29 C -0.153 4.153 30 H 0.191 0.809 31 H 0.203 0.797 32 H 0.219 0.781 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.259 0.741 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.143 0.857 42 H 0.117 0.883 43 H 0.258 0.742 44 H -0.213 1.213 45 H -0.239 1.239 46 H 0.262 0.738 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.079 0.921 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.179 -4.440 3.858 9.281 hybrid contribution -0.194 -0.741 -0.685 1.027 sum 6.986 -5.180 3.172 9.257 Atomic orbital electron populations 1.81277 1.13360 1.10841 1.08686 1.25550 0.92546 0.92410 0.92648 1.16149 0.84463 1.16423 0.96510 1.21938 0.94925 0.89109 0.95335 1.22400 0.93823 1.03903 1.01553 1.23478 1.01983 0.86712 0.86208 1.67496 1.05051 1.22125 1.32635 1.19872 0.88199 0.88697 0.85776 1.86288 1.36679 1.78742 1.20562 1.22601 0.95780 0.95249 0.82620 0.87563 1.21830 1.00218 0.95285 0.99161 1.21734 0.99459 1.01129 0.92898 1.20928 0.93999 0.96232 0.84927 0.92406 1.45857 1.47448 1.10946 1.32047 1.21046 0.81916 0.82091 0.85282 1.90782 1.42796 1.51891 1.60416 1.20282 1.03391 0.89489 0.97304 1.19975 0.95808 0.95475 0.96325 1.20782 1.05588 0.91529 1.04622 1.20707 1.03653 0.98683 1.02331 1.20155 1.01992 0.83821 1.03643 1.24613 0.83961 1.08155 1.00169 1.86461 1.15326 1.67082 1.69243 0.94515 0.79527 0.74691 0.79312 1.41846 1.31702 1.05925 1.33121 1.21676 1.02058 0.92878 0.97981 1.21584 0.99002 1.02976 0.91726 0.80903 0.79662 0.78094 0.91424 0.93085 0.93265 0.89165 0.74105 0.84683 0.83463 0.84043 0.85702 0.88289 0.74243 1.21305 1.23884 0.73844 0.89097 0.88176 0.92087 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -6.78 18.54 19.00 0.35 -6.42 16 2 C 0.28 2.47 14.91 88.33 1.32 3.78 16 3 C -0.13 -0.28 5.76 -21.10 -0.12 -0.40 16 4 C 0.01 -0.08 9.90 22.73 0.23 0.14 16 5 C -0.20 1.97 10.09 22.32 0.23 2.19 16 6 C 0.17 -1.33 11.16 84.69 0.95 -0.38 16 7 N -0.55 0.43 8.64 -307.96 -2.66 -2.23 16 8 C 0.36 1.17 7.47 85.16 0.64 1.80 16 9 O -0.32 -1.92 9.20 -87.81 -0.81 -2.73 16 10 C 0.09 0.10 2.38 30.59 0.07 0.17 16 11 H 0.11 -0.11 6.98 -2.39 -0.02 -0.13 16 12 C -0.13 -0.37 5.54 30.60 0.17 -0.20 16 13 C -0.11 -0.08 5.49 30.59 0.17 0.08 16 14 C 0.14 -0.08 2.45 44.99 0.11 0.03 16 15 H 0.06 0.39 7.58 -2.39 -0.02 0.37 16 16 N -0.71 2.80 5.08 -442.53 -2.25 0.55 16 17 C 0.51 1.51 7.79 87.66 0.68 2.19 16 18 O -0.58 -8.93 15.70 -3.02 -0.05 -8.98 16 19 C -0.06 0.22 6.24 29.10 0.18 0.40 16 20 C 0.04 0.23 5.66 41.08 0.23 0.46 16 21 C -0.20 -2.09 10.76 22.14 0.24 -1.85 16 22 C -0.23 -2.85 9.37 22.14 0.21 -2.65 16 23 C 0.02 0.17 6.54 41.08 0.27 0.44 16 24 C -0.06 -0.13 3.07 71.24 0.22 0.09 16 25 O -0.57 -1.59 12.86 -148.98 -1.92 -3.50 16 26 Si 0.81 0.73 30.58 68.60 2.10 2.83 16 27 N -0.53 -3.30 6.08 -171.12 -1.04 -4.33 16 28 C -0.11 0.64 5.39 30.59 0.16 0.80 16 29 C -0.11 0.15 5.57 30.59 0.17 0.33 16 30 H 0.17 -1.79 8.06 -2.91 -0.02 -1.82 16 31 H 0.19 -3.11 8.06 -2.91 -0.02 -3.13 16 32 H 0.20 -2.95 8.06 -2.91 -0.02 -2.98 16 33 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.42 -5.02 8.60 -92.71 -0.80 -5.82 16 38 H 0.14 -1.37 8.14 -2.38 -0.02 -1.39 16 39 H 0.15 -1.35 8.14 -2.39 -0.02 -1.37 16 40 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.13 1.53 6.22 -2.91 -0.02 1.51 16 42 H 0.10 -0.35 7.96 -2.38 -0.02 -0.37 16 43 H 0.41 -3.52 8.74 -74.06 -0.65 -4.16 16 44 H -0.29 -1.68 7.11 99.48 0.71 -0.98 16 45 H -0.31 -3.35 7.11 99.48 0.71 -2.65 16 46 H 0.42 0.52 8.96 -92.71 -0.83 -0.31 16 47 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 49 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -39.44 425.15 -1.38 -40.81 By element: Atomic # 1 Polarization: -22.21 SS G_CDS: -1.22 Total: -23.43 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.11 Total: 7.44 kcal Atomic # 7 Polarization: -6.84 SS G_CDS: -5.59 Total: -12.43 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -2.77 Total: -15.22 kcal Atomic # 14 Polarization: 0.73 SS G_CDS: 2.10 Total: 2.83 kcal Total: -39.44 -1.38 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_14644196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.893 kcal (2) G-P(sol) polarization free energy of solvation -39.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds