Wall clock time and date at job start Sun Mar 7 2021 07:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39946 * 120.60519 * 46.10987 * 3 2 1 5 5 C 1.38414 * 118.34502 * 180.26050 * 4 3 2 6 6 C 1.38275 * 119.45905 * 359.75536 * 5 4 3 7 7 N 1.31943 * 121.19413 * 359.97438 * 6 5 4 8 8 C 1.32170 * 121.80274 * 0.02562 * 7 6 5 9 9 O 1.35478 * 119.79571 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00631 * 0.02562 * 9 8 7 11 11 H 1.08998 * 109.47087 * 29.99696 * 10 9 8 12 12 C 1.52998 * 109.47645 * 150.00003 * 10 9 8 13 13 C 1.52998 * 109.47267 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46977 * 299.99814 * 13 12 10 15 15 H 1.08998 * 109.46989 * 300.00172 * 14 13 12 16 16 N 1.46501 * 109.46747 * 180.02562 * 14 13 12 17 17 C 1.34774 * 119.99563 * 155.00245 * 16 14 13 18 18 O 1.21278 * 120.00283 * 359.97438 * 17 16 14 19 19 C 1.50704 * 119.99611 * 179.97438 * 17 16 14 20 20 O 1.42904 * 109.47033 * 179.97438 * 19 17 16 21 21 C 1.35895 * 117.00129 * 179.97438 * 20 19 17 22 22 C 1.38709 * 120.05826 * 179.97438 * 21 20 19 23 23 C 1.50705 * 120.02722 * 0.04702 * 22 21 20 24 24 O 1.42903 * 109.46859 * 74.97592 * 23 22 21 25 25 Si 1.86296 * 109.47006 * 194.97664 * 23 22 21 26 26 C 1.38164 * 119.94688 * 180.02562 * 22 21 20 27 27 C 1.38245 * 120.05645 * 359.97438 * 26 22 21 28 28 C 1.38290 * 120.10982 * 0.02562 * 27 26 22 29 29 C 1.38126 * 120.05768 * 0.02562 * 28 27 26 30 30 C 1.52995 * 109.46812 * 60.00349 * 14 13 12 31 31 C 1.52998 * 109.47065 * 299.99597 * 30 14 13 32 32 H 1.07996 * 120.82747 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.27394 * 179.76937 * 5 4 3 34 34 H 1.07999 * 119.40495 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.46826 * 59.99681 * 12 10 9 36 36 H 1.09000 * 109.47123 * 300.00515 * 12 10 9 37 37 H 1.09003 * 109.46866 * 180.02562 * 13 12 10 38 38 H 1.08993 * 109.47496 * 60.00190 * 13 12 10 39 39 H 0.97003 * 120.00134 * 334.99902 * 16 14 13 40 40 H 1.09001 * 109.47213 * 59.99895 * 19 17 16 41 41 H 1.09002 * 109.47209 * 299.99541 * 19 17 16 42 42 H 1.09001 * 109.46893 * 314.97938 * 23 22 21 43 43 H 0.96700 * 113.99834 * 300.00258 * 24 23 22 44 44 H 1.48497 * 110.00573 * 298.67938 * 25 23 22 45 45 H 1.48505 * 110.00060 * 60.00304 * 25 23 22 46 46 H 1.07997 * 119.97398 * 179.97438 * 26 22 21 47 47 H 1.07995 * 119.94685 * 179.74958 * 27 26 22 48 48 H 1.08005 * 119.97140 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.03163 * 179.97438 * 29 28 27 50 50 H 1.08998 * 109.47488 * 60.00129 * 30 14 13 51 51 H 1.09005 * 109.47024 * 179.97438 * 30 14 13 52 52 H 1.09001 * 109.47678 * 299.99868 * 31 30 14 53 53 H 1.09003 * 109.46866 * 180.02562 * 31 30 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2809 -0.8341 -0.8681 5 6 4.6639 -0.7996 -0.8249 6 6 5.2956 0.0531 0.0616 7 7 4.6037 0.8359 0.8676 8 6 3.2820 0.8423 0.8671 9 8 2.6125 1.6623 1.7125 10 6 3.3986 2.4895 2.5725 11 1 4.3435 2.7273 2.0838 12 6 2.6386 3.7835 2.8702 13 6 3.4806 4.6694 3.7905 14 6 3.7568 3.9275 5.0998 15 1 2.8122 3.6897 5.5889 16 7 4.5626 4.7761 5.9812 17 6 4.5181 4.5951 7.3160 18 8 3.8107 3.7301 7.7875 19 6 5.3474 5.4676 8.2227 20 8 5.1297 5.0846 9.5822 21 6 5.8081 5.7771 10.5345 22 6 5.6439 5.4586 11.8745 23 6 4.7135 4.3431 12.2760 24 8 5.3254 3.0848 11.9856 25 14 4.3608 4.4555 14.1018 26 6 6.3343 6.1646 12.8408 27 6 7.1887 7.1873 12.4732 28 6 7.3542 7.5069 11.1379 29 6 6.6654 6.8048 10.1681 30 6 4.5169 2.6335 4.8021 31 6 3.6749 1.7476 3.8818 32 1 2.7647 -1.4916 -1.5519 33 1 5.2450 -1.4334 -1.4783 34 1 6.3747 0.0790 0.0948 35 1 1.6937 3.5457 3.3589 36 1 2.4421 4.3123 1.9375 37 1 2.9388 5.5912 4.0029 38 1 4.4252 4.9073 3.3014 39 1 5.1281 5.4681 5.6042 40 1 5.0579 6.5099 8.0885 41 1 6.4025 5.3488 7.9759 42 1 3.7803 4.4303 11.7195 43 1 5.5375 2.9570 11.0508 44 1 5.6211 4.3061 14.8728 45 1 3.7242 5.7597 14.4168 46 1 6.2065 5.9172 13.8843 47 1 7.7244 7.7407 13.2303 48 1 8.0219 8.3066 10.8533 49 1 6.7946 7.0550 9.1254 50 1 5.4616 2.8713 4.3130 51 1 4.7141 2.1052 5.7349 52 1 2.7303 1.5097 4.3709 53 1 4.2163 0.8256 3.6701 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_2989392.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:16:00 Heat of formation + Delta-G solvation = -43.302168 kcal Electronic energy + Delta-G solvation = -37560.035668 eV Core-core repulsion = 32557.317227 eV Total energy + Delta-G solvation = -5002.718440 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.172 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.01235 -41.74437 -40.95618 -39.85997 -38.68604 -37.94143 -37.74013 -37.51338 -35.06742 -33.74057 -32.85845 -32.06858 -31.90788 -31.43867 -30.43217 -28.61390 -26.70715 -25.75473 -24.92135 -24.04278 -23.76821 -22.87308 -22.67962 -21.64568 -21.17302 -20.27275 -19.52891 -19.41600 -18.49448 -18.36003 -17.95108 -17.57063 -17.42885 -17.04671 -16.87764 -16.69665 -16.22881 -16.09213 -15.84386 -15.65977 -15.40632 -15.29947 -15.24262 -15.02522 -14.85746 -14.74328 -14.43734 -14.31607 -14.17246 -14.13907 -13.97763 -13.87451 -13.71584 -13.53788 -13.35710 -13.14073 -13.01375 -12.82678 -12.78721 -12.66817 -12.30013 -12.25968 -12.19769 -12.14871 -11.58483 -11.34061 -11.26349 -11.10283 -11.00060 -10.98441 -10.74113 -10.21171 -10.10564 -9.60439 -9.36446 -4.86065 -0.42983 0.08575 0.20913 0.24997 1.32014 1.37580 1.41535 1.50077 1.58156 1.80099 1.86893 1.88192 2.49924 2.56051 2.70465 2.78715 3.25767 3.43658 3.51119 3.55070 3.56501 3.67849 3.75613 3.86841 3.91184 3.92975 3.95391 3.99582 4.00444 4.05376 4.09535 4.15992 4.16617 4.19570 4.25653 4.28699 4.36066 4.38048 4.45989 4.53461 4.56842 4.73610 4.81473 4.82881 4.93528 4.96842 5.01837 5.03788 5.08671 5.12055 5.16094 5.18980 5.23190 5.37153 5.38047 5.43929 5.58107 6.08298 6.14929 6.35598 6.43046 6.50742 6.70060 7.10738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.283 3.717 3 C -0.129 4.129 4 C 0.014 3.986 5 C -0.198 4.198 6 C 0.173 3.827 7 N -0.549 5.549 8 C 0.357 3.643 9 O -0.316 6.316 10 C 0.092 3.908 11 H 0.106 0.894 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.145 3.855 15 H 0.064 0.936 16 N -0.704 5.704 17 C 0.514 3.486 18 O -0.568 6.568 19 C 0.036 3.964 20 O -0.313 6.313 21 C 0.127 3.873 22 C -0.166 4.166 23 C -0.089 4.089 24 O -0.547 6.547 25 Si 0.810 3.190 26 C -0.104 4.104 27 C -0.156 4.156 28 C -0.074 4.074 29 C -0.202 4.202 30 C -0.114 4.114 31 C -0.127 4.127 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.202 0.798 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.423 0.577 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.067 0.933 43 H 0.369 0.631 44 H -0.280 1.280 45 H -0.265 1.265 46 H 0.123 0.877 47 H 0.146 0.854 48 H 0.160 0.840 49 H 0.166 0.834 50 H 0.090 0.910 51 H 0.052 0.948 52 H 0.053 0.947 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.231 4.295 -7.154 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.032 4.032 3 C -0.135 4.135 4 C -0.013 4.013 5 C -0.217 4.217 6 C 0.016 3.984 7 N -0.273 5.273 8 C 0.175 3.825 9 O -0.222 6.222 10 C 0.036 3.964 11 H 0.124 0.876 12 C -0.153 4.153 13 C -0.147 4.147 14 C 0.041 3.959 15 H 0.082 0.918 16 N -0.358 5.358 17 C 0.300 3.700 18 O -0.446 6.446 19 C -0.041 4.041 20 O -0.227 6.227 21 C 0.082 3.918 22 C -0.167 4.167 23 C -0.196 4.196 24 O -0.353 6.353 25 Si 0.710 3.290 26 C -0.122 4.122 27 C -0.174 4.174 28 C -0.092 4.092 29 C -0.220 4.220 30 C -0.153 4.153 31 C -0.165 4.165 32 H 0.190 0.810 33 H 0.203 0.797 34 H 0.219 0.781 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.261 0.739 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.085 0.915 43 H 0.217 0.783 44 H -0.207 1.207 45 H -0.191 1.191 46 H 0.141 0.859 47 H 0.164 0.836 48 H 0.178 0.822 49 H 0.183 0.817 50 H 0.109 0.891 51 H 0.071 0.929 52 H 0.072 0.928 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.040 4.500 -4.805 10.391 hybrid contribution 0.625 0.258 -1.887 2.005 sum 8.665 4.758 -6.692 11.938 Atomic orbital electron populations 1.81283 1.13370 1.09793 1.09732 1.25551 0.92544 0.92535 0.92523 1.16148 0.84458 1.06810 1.06126 1.21933 0.94924 0.92069 0.92406 1.22394 0.93828 1.02829 1.02677 1.23470 1.01971 0.86520 0.86404 1.67498 1.05035 1.27138 1.27581 1.19862 0.88178 0.87438 0.86997 1.86289 1.36657 1.51059 1.48219 1.22617 0.95799 0.89230 0.88733 0.87608 1.21583 0.99074 0.93587 1.01064 1.21687 1.02161 0.98210 0.92600 1.21000 0.94098 0.90288 0.90556 0.91811 1.45676 1.47470 1.38156 1.04454 1.20475 0.82048 0.83902 0.83589 1.90782 1.41999 1.35615 1.76180 1.22767 1.02071 1.00103 0.79186 1.86077 1.64331 1.57163 1.15089 1.18917 0.92736 0.92376 0.87802 1.19855 1.03430 1.01881 0.91508 1.25456 0.95275 0.82664 1.16246 1.86638 1.82682 1.34500 1.31500 0.92300 0.82580 0.83190 0.70888 1.21013 0.96531 0.96423 0.98184 1.21393 0.99842 0.98245 0.97923 1.21429 0.97360 0.98539 0.91883 1.21676 1.00058 0.97722 1.02544 1.21745 0.99474 0.95156 0.98936 1.21830 1.00363 0.99224 0.95096 0.80969 0.79732 0.78112 0.91903 0.89574 0.88993 0.88119 0.73922 0.85848 0.85567 0.91473 0.78264 1.20677 1.19092 0.85928 0.83626 0.82201 0.81660 0.89138 0.92912 0.92819 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -6.41 18.54 19.00 0.35 -6.06 16 2 C 0.28 2.22 14.91 88.33 1.32 3.54 16 3 C -0.13 -0.16 5.77 -21.10 -0.12 -0.28 16 4 C 0.01 -0.09 9.90 22.73 0.23 0.14 16 5 C -0.20 2.12 10.09 22.32 0.23 2.34 16 6 C 0.17 -1.49 11.16 84.68 0.95 -0.54 16 7 N -0.55 1.06 8.64 -307.97 -2.66 -1.60 16 8 C 0.36 0.76 7.47 85.16 0.64 1.39 16 9 O -0.32 -1.48 9.20 -87.77 -0.81 -2.29 16 10 C 0.09 -0.06 2.38 30.59 0.07 0.02 16 11 H 0.11 -0.28 6.98 -2.39 -0.02 -0.29 16 12 C -0.11 0.36 5.57 30.59 0.17 0.53 16 13 C -0.11 0.86 5.39 30.60 0.16 1.03 16 14 C 0.15 -0.44 2.45 44.99 0.11 -0.33 16 15 H 0.06 0.24 7.58 -2.39 -0.02 0.22 16 16 N -0.70 4.43 5.08 -442.53 -2.25 2.18 16 17 C 0.51 0.47 7.87 87.66 0.69 1.16 16 18 O -0.57 -7.21 16.16 16.01 0.26 -6.95 16 19 C 0.04 -0.17 5.22 71.24 0.37 0.21 16 20 O -0.31 -1.47 8.57 -73.34 -0.63 -2.10 16 21 C 0.13 0.56 6.62 22.51 0.15 0.71 16 22 C -0.17 -1.30 5.28 -19.77 -0.10 -1.41 16 23 C -0.09 -0.75 2.33 71.24 0.17 -0.58 16 24 O -0.55 -5.70 12.65 -148.98 -1.89 -7.59 16 25 Si 0.81 3.77 30.40 68.60 2.09 5.86 16 26 C -0.10 -0.67 8.66 22.25 0.19 -0.47 16 27 C -0.16 -0.27 10.04 22.28 0.22 -0.04 16 28 C -0.07 0.14 10.04 22.26 0.22 0.36 16 29 C -0.20 0.34 9.04 22.37 0.20 0.55 16 30 C -0.11 0.20 5.50 30.59 0.17 0.37 16 31 C -0.13 -0.10 5.54 30.59 0.17 0.07 16 32 H 0.17 -1.89 8.06 -2.91 -0.02 -1.91 16 33 H 0.19 -3.21 8.06 -2.91 -0.02 -3.23 16 34 H 0.20 -3.13 8.06 -2.91 -0.02 -3.15 16 35 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 36 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.10 -1.23 8.14 -2.39 -0.02 -1.25 16 39 H 0.42 -6.10 8.60 -92.71 -0.80 -6.90 16 40 H 0.12 -1.30 7.66 -2.39 -0.02 -1.32 16 41 H 0.13 -1.38 7.66 -2.39 -0.02 -1.40 16 42 H 0.07 0.61 7.83 -2.39 -0.02 0.59 16 43 H 0.37 3.03 8.60 -74.06 -0.64 2.39 16 44 H -0.28 -2.48 6.81 99.48 0.68 -1.80 16 45 H -0.27 -1.79 7.11 99.48 0.71 -1.09 16 46 H 0.12 0.77 4.94 -2.91 -0.01 0.76 16 47 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16 48 H 0.16 -1.29 8.06 -2.91 -0.02 -1.31 16 49 H 0.17 -1.57 6.30 -2.91 -0.02 -1.59 16 50 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 51 H 0.05 0.18 8.14 -2.38 -0.02 0.16 16 52 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 53 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 Total: 0.00 -32.95 445.98 0.22 -32.73 By element: Atomic # 1 Polarization: -22.49 SS G_CDS: -0.45 Total: -22.94 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.20 Total: 8.75 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -4.56 Total: -5.48 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -3.06 Total: -18.92 kcal Atomic # 14 Polarization: 3.77 SS G_CDS: 2.09 Total: 5.86 kcal Total: -32.95 0.22 -32.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_2989392.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.575 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds