Wall clock time and date at job start Sun Mar 7 2021 07:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33818 * 122.44937 * 2 1 4 4 C 1.50698 * 124.52375 * 359.95284 * 3 2 1 5 5 O 1.42903 * 109.46994 * 314.83415 * 4 3 2 6 6 Si 1.86305 * 109.47209 * 194.83905 * 4 3 2 7 7 S 1.70624 * 110.95257 * 179.70265 * 3 2 1 8 8 C 1.75831 * 91.56063 * 0.35837 * 7 3 2 9 9 C 1.46587 * 125.45547 * 179.91382 * 8 7 3 10 10 O 1.21704 * 119.99996 * 179.69716 * 9 8 7 11 11 N 1.34778 * 119.99674 * 359.68992 * 9 8 7 12 12 C 1.46507 * 119.99660 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.46921 * 325.00245 * 12 11 9 14 14 C 1.52994 * 109.47179 * 85.00077 * 12 11 9 15 15 C 1.53001 * 109.47253 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46904 * 300.00021 * 15 14 12 17 17 H 1.09004 * 109.47408 * 299.99803 * 16 15 14 18 18 O 1.42897 * 109.47196 * 179.97438 * 16 15 14 19 19 C 1.35477 * 117.00130 * 89.99625 * 18 16 15 20 20 N 1.32173 * 119.80109 * 0.02562 * 19 18 16 21 21 C 1.31936 * 121.80690 * 180.02562 * 20 19 18 22 22 C 1.38280 * 121.19457 * 359.97438 * 21 20 19 23 23 C 1.38417 * 119.45731 * 359.97438 * 22 21 20 24 24 C 1.39952 * 118.34441 * 0.02562 * 23 22 21 25 25 C 1.43195 * 120.59771 * 179.97438 * 24 23 22 26 26 N 9.75199 * 169.57943 * 181.34090 * 9 1 2 27 27 C 1.52994 * 109.47183 * 59.99936 * 16 15 14 28 28 C 1.52998 * 109.46984 * 205.00102 * 12 11 9 29 29 C 1.36642 * 109.08609 * 359.64784 * 8 7 3 30 30 H 1.09006 * 109.46789 * 275.77763 * 1 2 3 31 31 H 1.08996 * 109.47275 * 35.77556 * 1 2 3 32 32 H 1.08995 * 109.47470 * 155.77592 * 1 2 3 33 33 H 1.08998 * 109.47553 * 74.83628 * 4 3 2 34 34 H 0.96691 * 114.00129 * 180.02562 * 5 4 3 35 35 H 1.48497 * 109.99697 * 59.99254 * 6 4 3 36 36 H 1.48492 * 110.00072 * 181.31579 * 6 4 3 37 37 H 0.96993 * 120.00683 * 359.97438 * 11 9 8 38 38 H 1.09006 * 109.47420 * 299.99970 * 14 12 11 39 39 H 1.09000 * 109.47500 * 60.00024 * 14 12 11 40 40 H 1.09001 * 109.47475 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.46892 * 59.99599 * 15 14 12 42 42 H 1.07995 * 119.40373 * 180.27064 * 21 20 19 43 43 H 1.07997 * 120.27427 * 179.97438 * 22 21 20 44 44 H 1.07995 * 120.82753 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47500 * 59.99879 * 27 16 15 46 46 H 1.09006 * 109.47420 * 179.97438 * 27 16 15 47 47 H 1.09001 * 109.46830 * 59.99921 * 28 12 11 48 48 H 1.08995 * 109.47445 * 300.00113 * 28 12 11 49 49 H 1.08004 * 123.35322 * 180.28263 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 -0.0010 5 8 0.5756 2.5825 -0.9572 6 14 2.9555 3.7517 -0.4505 7 16 3.8970 0.7892 0.0083 8 6 3.5937 -0.9427 0.0008 9 6 4.6231 -1.9863 0.0013 10 8 4.3001 -3.1597 0.0013 11 7 5.9273 -1.6463 0.0016 12 6 6.9561 -2.6893 0.0015 13 1 6.6118 -3.5393 0.5907 14 6 7.2251 -3.1403 -1.4355 15 6 8.2991 -4.2300 -1.4355 16 6 9.5880 -3.6757 -0.8253 17 1 9.9327 -2.8257 -1.4144 18 8 10.5909 -4.6935 -0.8247 19 6 11.3865 -4.7737 -1.9184 20 7 11.2123 -3.9299 -2.9207 21 6 11.9637 -3.9727 -4.0043 22 6 12.9732 -4.9080 -4.1393 23 6 13.2009 -5.8159 -3.1196 24 6 12.3914 -5.7516 -1.9798 25 6 12.5844 -6.6676 -0.8962 26 7 12.7392 -7.3927 -0.0365 27 6 9.3190 -3.2246 0.6117 28 6 8.2449 -2.1344 0.6115 29 6 2.2446 -1.1601 0.0004 30 1 -0.3633 0.1035 1.0225 31 1 -0.3633 0.8337 -0.6008 32 1 -0.3634 -0.9371 -0.4216 33 1 1.2453 2.7459 0.9904 34 1 0.1493 3.4486 -1.0124 35 1 3.4957 3.4493 -1.8003 36 1 2.3947 5.1263 -0.4241 37 1 6.1847 -0.7112 0.0011 38 1 6.3069 -3.5356 -1.8701 39 1 7.5693 -2.2904 -2.0247 40 1 8.4910 -4.5510 -2.4593 41 1 7.9544 -5.0798 -0.8464 42 1 11.7903 -3.2614 -4.7982 43 1 13.5792 -4.9299 -5.0331 44 1 13.9836 -6.5555 -3.2016 45 1 8.9743 -4.0745 1.2008 46 1 10.2374 -2.8301 1.0467 47 1 8.0532 -1.8131 1.6353 48 1 8.5891 -1.2844 0.0224 49 1 1.8019 -2.1452 0.0007 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16903866_6739946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:17:56 Heat of formation + Delta-G solvation = -4.289222 kcal Electronic energy + Delta-G solvation = -33677.270948 eV Core-core repulsion = 29084.078674 eV Total energy + Delta-G solvation = -4593.192274 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.98401 -41.21188 -40.05524 -39.55937 -38.10191 -37.74345 -37.47868 -35.06790 -33.72817 -32.50666 -31.96769 -31.76738 -30.20360 -29.81514 -26.54313 -25.72634 -24.88008 -24.26599 -23.87423 -22.84958 -21.75898 -21.25267 -20.30982 -19.94652 -19.39401 -19.17022 -18.60895 -18.01834 -17.64457 -17.08082 -16.90707 -16.35222 -16.25503 -16.15966 -16.00088 -15.59006 -15.27761 -15.08437 -14.98557 -14.82706 -14.63120 -14.53471 -14.40324 -14.31694 -14.19195 -14.15553 -13.96835 -13.84754 -13.34109 -13.30408 -13.15244 -13.05248 -13.02633 -12.91223 -12.78819 -12.54019 -12.25534 -12.22457 -12.13160 -11.93187 -11.56760 -11.36600 -11.22718 -10.97259 -10.72759 -10.66586 -10.27620 -9.71122 -9.58946 -9.36087 -5.11229 -0.66812 -0.41567 0.22334 0.27436 0.66062 1.08314 1.30747 1.51704 1.54905 1.75791 1.88943 1.90013 1.99978 2.06050 2.72070 2.80110 3.23548 3.27335 3.51039 3.58637 3.65061 3.69210 3.78535 3.92048 3.96383 4.03352 4.10448 4.12459 4.18122 4.27043 4.29801 4.35123 4.37718 4.39980 4.46638 4.56498 4.58238 4.74549 4.79511 4.83718 4.88069 4.94939 4.98560 5.00394 5.03359 5.05561 5.09648 5.16886 5.20173 5.37206 5.38582 5.45240 5.45637 6.09818 6.33876 6.37122 6.55713 6.71766 7.01683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.042 4.042 5 O -0.544 6.544 6 Si 0.723 3.277 7 S 0.266 5.734 8 C -0.286 4.286 9 C 0.592 3.408 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.143 3.857 13 H 0.070 0.930 14 C -0.116 4.116 15 C -0.125 4.125 16 C 0.091 3.909 17 H 0.106 0.894 18 O -0.314 6.314 19 C 0.357 3.643 20 N -0.549 5.549 21 C 0.172 3.828 22 C -0.198 4.198 23 C 0.014 3.986 24 C -0.128 4.128 25 C 0.284 3.716 26 N -0.465 5.465 27 C -0.113 4.113 28 C -0.111 4.111 29 C -0.062 4.062 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.399 0.601 35 H -0.280 1.280 36 H -0.254 1.254 37 H 0.413 0.587 38 H 0.052 0.948 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.201 0.799 43 H 0.185 0.815 44 H 0.173 0.827 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 11.095 -3.834 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C -0.323 4.323 4 C -0.153 4.153 5 O -0.355 6.355 6 Si 0.624 3.376 7 S 0.535 5.465 8 C -0.406 4.406 9 C 0.379 3.621 10 O -0.452 6.452 11 N -0.359 5.359 12 C 0.039 3.961 13 H 0.089 0.911 14 C -0.155 4.155 15 C -0.163 4.163 16 C 0.036 3.964 17 H 0.123 0.877 18 O -0.221 6.221 19 C 0.175 3.825 20 N -0.273 5.273 21 C 0.016 3.984 22 C -0.217 4.217 23 C -0.013 4.013 24 C -0.135 4.135 25 C -0.031 4.031 26 N -0.141 5.141 27 C -0.151 4.151 28 C -0.149 4.149 29 C -0.096 4.096 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.251 0.749 35 H -0.206 1.206 36 H -0.178 1.178 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.218 0.782 43 H 0.202 0.798 44 H 0.191 0.809 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.117 0.883 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.481 10.561 -2.781 11.805 hybrid contribution -2.252 -1.035 -0.732 2.585 sum 2.229 9.526 -3.513 10.395 Atomic orbital electron populations 1.20701 0.88585 1.03653 1.03087 1.18780 0.98940 0.90718 1.03510 1.23636 0.99155 0.99226 1.10269 1.24298 0.97265 0.96878 0.96809 1.86528 1.49056 1.38732 1.61198 0.94726 0.81445 0.77263 0.84164 1.82239 1.01219 0.95752 1.67324 1.24646 0.97603 0.98615 1.19720 1.17157 0.82555 0.86976 0.75406 1.90834 1.82359 1.20084 1.51909 1.45773 1.04346 1.11040 1.74719 1.21096 0.87657 0.90588 0.96751 0.91134 1.21764 0.97966 0.99032 0.96740 1.21818 0.94423 0.98617 1.01481 1.22619 0.85296 0.89778 0.98729 0.87656 1.86290 1.44654 1.55176 1.35942 1.19867 0.87124 0.88990 0.86485 1.67499 1.31178 1.25777 1.02844 1.23458 0.87399 0.95056 0.92484 1.22389 1.01229 0.96576 1.01551 1.21932 0.94437 0.96548 0.88409 1.16141 1.03739 0.98763 0.94870 1.25502 0.92531 0.92468 0.92605 1.81245 1.09787 1.11920 1.11184 1.21574 1.00180 0.99210 0.94121 1.21723 0.91461 0.98408 1.03298 1.20754 0.91532 1.00102 0.97237 0.90738 0.89150 0.91983 0.87122 0.74894 1.20571 1.17814 0.74997 0.92943 0.89383 0.91311 0.92519 0.78209 0.79759 0.80950 0.91636 0.89348 0.88747 0.88280 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 9.74 71.24 0.69 0.50 16 2 C -0.11 -0.43 5.74 -21.05 -0.12 -0.55 16 3 C -0.20 -0.14 5.65 24.68 0.14 0.00 16 4 C -0.04 0.16 2.69 71.24 0.19 0.35 16 5 O -0.54 1.19 10.17 -148.98 -1.52 -0.33 16 6 Si 0.72 -3.88 30.99 68.60 2.13 -1.75 16 7 S 0.27 -0.62 19.36 -56.49 -1.09 -1.72 16 8 C -0.29 -1.37 6.45 24.08 0.16 -1.21 16 9 C 0.59 4.36 7.75 86.42 0.67 5.03 16 10 O -0.57 -9.20 16.50 -4.36 -0.07 -9.27 16 11 N -0.71 0.09 5.07 -446.58 -2.27 -2.18 16 12 C 0.14 0.01 2.45 44.99 0.11 0.12 16 13 H 0.07 0.39 7.58 -2.38 -0.02 0.37 16 14 C -0.12 -0.10 5.49 30.59 0.17 0.07 16 15 C -0.12 -0.25 5.54 30.59 0.17 -0.08 16 16 C 0.09 0.04 2.38 30.59 0.07 0.11 16 17 H 0.11 -0.15 6.99 -2.38 -0.02 -0.17 16 18 O -0.31 -1.63 9.20 -87.77 -0.81 -2.44 16 19 C 0.36 0.96 7.47 85.16 0.64 1.60 16 20 N -0.55 0.63 8.64 -307.97 -2.66 -2.03 16 21 C 0.17 -1.36 11.16 84.69 0.95 -0.41 16 22 C -0.20 2.01 10.09 22.32 0.23 2.24 16 23 C 0.01 -0.08 9.90 22.73 0.23 0.14 16 24 C -0.13 -0.21 5.77 -21.10 -0.12 -0.33 16 25 C 0.28 2.30 14.91 88.34 1.32 3.62 16 26 N -0.46 -6.49 18.53 18.99 0.35 -6.14 16 27 C -0.11 0.24 5.57 30.61 0.17 0.41 16 28 C -0.11 0.64 5.40 30.61 0.17 0.80 16 29 C -0.06 -0.40 9.78 21.71 0.21 -0.19 16 30 H 0.07 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.09 0.19 5.49 -2.39 -0.01 0.18 16 32 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16 33 H 0.11 -0.90 7.96 -2.39 -0.02 -0.92 16 34 H 0.40 -4.18 8.74 -74.06 -0.65 -4.83 16 35 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 36 H -0.25 0.65 7.11 99.48 0.71 1.36 16 37 H 0.41 -2.62 7.72 -92.71 -0.72 -3.33 16 38 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.09 -0.23 8.14 -2.39 -0.02 -0.24 16 40 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.20 -2.93 8.06 -2.91 -0.02 -2.96 16 43 H 0.19 -3.10 8.06 -2.91 -0.02 -3.12 16 44 H 0.17 -1.83 8.06 -2.91 -0.02 -1.86 16 45 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.09 -0.30 8.14 -2.38 -0.02 -0.32 16 47 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 Total: 0.00 -28.80 424.69 -0.22 -29.01 By element: Atomic # 1 Polarization: -15.06 SS G_CDS: -0.30 Total: -15.36 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.03 Total: 12.20 kcal Atomic # 7 Polarization: -5.78 SS G_CDS: -4.57 Total: -10.35 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -2.39 Total: -12.04 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.13 Total: -1.75 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.09 Total: -1.72 kcal Total: -28.80 -0.22 -29.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16903866_6739946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.726 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds