Wall clock time and date at job start Sun Mar 7 2021 11:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35724 * 116.99687 * 2 1 4 4 C 1.38688 * 119.86175 * 0.02562 * 3 2 1 5 5 C 1.38439 * 120.03225 * 179.97438 * 4 3 2 6 6 O 1.35655 * 120.12022 * 179.97438 * 5 4 3 7 7 C 1.42896 * 117.00066 * 0.02562 * 6 5 4 8 8 C 1.40310 * 119.75542 * 359.97438 * 5 4 3 9 9 C 1.47272 * 120.13502 * 180.02562 * 8 5 4 10 10 O 1.21635 * 120.00102 * 359.97438 * 9 8 5 11 11 N 1.34777 * 120.00307 * 179.97438 * 9 8 5 12 12 C 1.39886 * 120.00225 * 174.72799 * 11 9 8 13 13 C 1.39257 * 120.48680 * 327.13295 * 12 11 9 14 14 C 1.38547 * 118.35390 * 179.78138 * 13 12 11 15 15 Si 1.86802 * 120.37897 * 180.21423 * 14 13 12 16 16 C 1.86301 * 109.47122 * 270.28077 * 15 14 13 17 17 C 1.86304 * 109.46923 * 30.28173 * 15 14 13 18 18 C 1.86294 * 109.46884 * 150.27836 * 15 14 13 19 19 C 1.38227 * 119.23818 * 0.49527 * 14 13 12 20 20 N 1.31882 * 120.92858 * 359.74440 * 19 14 13 21 21 C 1.31786 * 121.79877 * 359.97438 * 20 19 14 22 22 C 1.39868 * 119.73113 * 0.02562 * 8 5 4 23 23 C 1.37537 * 119.96263 * 359.97438 * 22 8 5 24 24 C 1.50703 * 119.88069 * 179.97438 * 23 22 8 25 25 O 1.42900 * 109.46881 * 255.00204 * 24 23 22 26 26 Si 1.86296 * 109.46967 * 14.99973 * 24 23 22 27 27 H 1.48505 * 109.46876 * 60.00188 * 26 24 23 28 28 H 1.48499 * 109.47148 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47531 * 300.00221 * 26 24 23 30 30 H 1.08997 * 109.47424 * 59.99347 * 1 2 3 31 31 H 1.09002 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46918 * 299.99338 * 1 2 3 33 33 H 1.07999 * 119.98049 * 359.97438 * 4 3 2 34 34 H 1.08994 * 109.47266 * 300.00017 * 7 6 5 35 35 H 1.09002 * 109.47280 * 60.00052 * 7 6 5 36 36 H 1.09004 * 109.47069 * 179.97438 * 7 6 5 37 37 H 0.96998 * 119.99788 * 354.72409 * 11 9 8 38 38 H 1.08000 * 120.82377 * 359.97438 * 13 12 11 39 39 H 1.08998 * 109.46863 * 60.00364 * 16 15 14 40 40 H 1.08999 * 109.46655 * 179.97438 * 16 15 14 41 41 H 1.09000 * 109.47052 * 299.99715 * 16 15 14 42 42 H 1.08997 * 109.47312 * 59.99790 * 17 15 14 43 43 H 1.09004 * 109.46754 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.46712 * 299.99650 * 17 15 14 45 45 H 1.09001 * 109.47052 * 60.00753 * 18 15 14 46 46 H 1.09004 * 109.46960 * 179.97438 * 18 15 14 47 47 H 1.08997 * 109.47250 * 300.00148 * 18 15 14 48 48 H 1.08003 * 119.53442 * 179.72201 * 19 14 13 49 49 H 1.07996 * 119.67149 * 179.97438 * 21 20 19 50 50 H 1.08000 * 120.01960 * 179.72450 * 22 8 5 51 51 H 1.08998 * 109.46975 * 135.00582 * 24 23 22 52 52 H 0.96705 * 114.00126 * 59.99835 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2869 2.3706 0.0005 5 6 1.9116 3.6060 0.0011 6 8 1.1718 4.7430 0.0011 7 6 -0.2492 4.5923 0.0011 8 6 3.3129 3.6777 0.0016 9 6 3.9862 4.9875 0.0028 10 8 3.3274 6.0100 0.0028 11 7 5.3324 5.0533 0.0038 12 6 5.9722 6.2923 -0.1064 13 6 5.4025 7.3174 -0.8574 14 6 6.0719 8.5280 -0.9328 15 14 5.3560 9.9435 -1.9195 16 6 5.9670 9.8470 -3.6769 17 6 3.4962 9.8347 -1.9017 18 6 5.8907 11.5601 -1.1639 19 6 7.2784 8.6746 -0.2744 20 7 7.7940 7.6824 0.4248 21 6 7.1878 6.5167 0.5272 22 6 4.0677 2.5002 0.0011 23 6 3.4353 1.2788 0.0005 24 6 4.2503 0.0113 -0.0006 25 8 4.2141 -0.5771 -1.3024 26 14 6.0134 0.4063 0.4535 27 1 6.0510 1.0177 1.8063 28 1 6.8165 -0.8428 0.4529 29 1 6.5780 1.3588 -0.5361 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2085 2.3111 0.0005 34 1 -0.5564 4.0431 -0.8888 35 1 -0.5564 4.0431 0.8911 36 1 -0.7189 5.5760 0.0015 37 1 5.8575 4.2414 0.0810 38 1 4.4606 7.1732 -1.3658 39 1 5.6540 8.9011 -4.1189 40 1 5.5488 10.6727 -4.2526 41 1 7.0551 9.9107 -3.6872 42 1 3.1388 9.8911 -0.8736 43 1 3.0785 10.6604 -2.4779 44 1 3.1834 8.8888 -2.3439 45 1 6.9788 11.6238 -1.1744 46 1 5.4734 12.3861 -1.7399 47 1 5.5333 11.6165 -0.1358 48 1 7.8065 9.6149 -0.3337 49 1 7.6413 5.7275 1.1086 50 1 5.1466 2.5499 -0.0030 51 1 3.8359 -0.6879 0.7257 52 1 4.5683 -0.0094 -2.0006 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_12297780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:30:03 Heat of formation + Delta-G solvation = -106.445201 kcal Electronic energy + Delta-G solvation = -34680.527505 eV Core-core repulsion = 30156.043826 eV Total energy + Delta-G solvation = -4524.483679 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.33616 -41.51417 -40.31646 -39.79131 -38.50419 -37.03407 -36.20506 -33.12041 -32.33779 -32.20925 -30.62587 -29.41843 -29.01426 -28.40378 -28.29536 -28.12574 -26.17908 -25.38262 -24.52130 -23.82639 -22.63320 -21.58740 -20.22032 -19.19737 -18.75090 -18.06305 -17.98222 -17.62051 -17.31277 -17.09236 -16.67822 -16.65432 -16.48108 -15.89259 -15.79852 -15.75820 -15.45228 -15.15979 -14.90807 -14.84567 -14.60183 -14.21920 -14.09462 -14.02049 -13.83609 -13.77074 -13.58916 -13.36056 -13.30436 -13.16771 -13.11073 -12.97142 -12.68571 -12.56607 -12.56158 -12.25589 -12.11368 -12.03453 -11.90938 -11.74447 -11.69526 -11.22702 -11.07202 -10.80739 -10.38450 -10.37535 -10.13661 -9.99093 -9.44874 -9.19043 -0.44070 0.00055 0.04692 0.28084 1.15236 1.39519 1.50980 1.60249 1.68774 1.80318 1.93488 1.98394 2.06878 2.08379 2.12218 2.47665 2.60224 2.89604 3.33694 3.43302 3.52937 3.64694 3.68840 3.78449 3.85021 4.04256 4.06548 4.15182 4.19203 4.25803 4.26346 4.28574 4.30652 4.36709 4.55266 4.61394 4.67274 4.68631 4.77926 4.80891 4.84655 4.85649 4.87257 4.89972 4.91427 4.97998 5.06210 5.09873 5.14065 5.22422 5.55670 5.64444 5.68859 5.77275 5.98474 6.16500 6.27933 6.76393 6.91976 6.98505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.308 6.308 3 C 0.223 3.777 4 C -0.310 4.310 5 C 0.224 3.776 6 O -0.303 6.303 7 C 0.010 3.990 8 C -0.229 4.229 9 C 0.564 3.436 10 O -0.534 6.534 11 N -0.662 5.662 12 C 0.078 3.922 13 C -0.064 4.064 14 C -0.414 4.414 15 Si 1.128 2.872 16 C -0.455 4.455 17 C -0.464 4.464 18 C -0.454 4.454 19 C 0.096 3.904 20 N -0.496 5.496 21 C 0.076 3.924 22 C -0.008 4.008 23 C -0.199 4.199 24 C -0.066 4.066 25 O -0.550 6.550 26 Si 0.960 3.040 27 H -0.247 1.247 28 H -0.270 1.270 29 H -0.229 1.229 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.421 0.579 38 H 0.135 0.865 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.178 0.822 49 H 0.176 0.824 50 H 0.155 0.845 51 H 0.115 0.885 52 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -2.203 -1.679 4.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.219 6.219 3 C 0.175 3.825 4 C -0.329 4.329 5 C 0.175 3.825 6 O -0.214 6.214 7 C -0.084 4.084 8 C -0.233 4.233 9 C 0.355 3.645 10 O -0.411 6.411 11 N -0.309 5.309 12 C -0.018 4.018 13 C -0.092 4.092 14 C -0.454 4.454 15 Si 1.315 2.685 16 C -0.563 4.563 17 C -0.570 4.570 18 C -0.563 4.563 19 C -0.061 4.061 20 N -0.205 5.205 21 C -0.084 4.084 22 C -0.026 4.026 23 C -0.201 4.201 24 C -0.176 4.176 25 O -0.357 6.357 26 Si 0.781 3.219 27 H -0.170 1.170 28 H -0.195 1.195 29 H -0.152 1.152 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.184 0.816 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.260 0.740 38 H 0.153 0.847 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.195 0.805 49 H 0.193 0.807 50 H 0.172 0.828 51 H 0.133 0.867 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.896 -1.779 -0.666 2.684 hybrid contribution -1.533 -0.596 -0.473 1.711 sum -3.429 -2.375 -1.139 4.324 Atomic orbital electron populations 1.23498 0.76010 1.06145 1.02675 1.86163 1.23665 1.25885 1.86182 1.18902 0.91559 0.84240 0.87830 1.21447 1.02274 0.90514 1.18675 1.18898 0.89921 0.85705 0.87989 1.86352 1.20874 1.28278 1.85889 1.23496 0.76453 1.05693 1.02801 1.18893 0.91009 0.92793 1.20599 1.18222 0.81511 0.89210 0.75543 1.90838 1.64997 1.36547 1.48743 1.43246 1.06402 1.08100 1.73196 1.19005 0.95731 0.87870 0.99243 1.21645 0.99662 0.92980 0.94910 1.29011 1.00007 1.09097 1.07282 0.77193 0.64316 0.62281 0.64698 1.26181 1.06739 1.04664 1.18686 1.26346 1.22340 1.04316 1.04045 1.26156 1.06693 1.16197 1.07230 1.23072 0.93168 0.97712 0.92175 1.67669 1.34599 1.00778 1.17457 1.22935 0.92292 0.95900 0.97235 1.20971 0.99918 0.89498 0.92239 1.19578 0.91635 0.96112 1.12739 1.24864 1.09374 0.94025 0.89295 1.86533 1.86999 1.45456 1.16693 0.85606 0.74061 0.80601 0.81597 1.17019 1.19508 1.15211 0.91260 0.86175 0.91060 0.81623 0.90841 0.90924 0.86873 0.73973 0.84734 0.91766 0.90089 0.90614 0.92183 0.90138 0.92220 0.90005 0.90048 0.91373 0.80518 0.80684 0.82797 0.86723 0.76466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.80 113.37 1.11 1.04 16 2 O -0.31 -0.21 9.80 -90.46 -0.89 -1.10 16 3 C 0.22 0.26 6.67 22.61 0.15 0.41 16 4 C -0.31 -0.09 8.01 22.43 0.18 0.09 16 5 C 0.22 1.08 6.70 22.82 0.15 1.23 16 6 O -0.30 -2.04 8.56 -68.74 -0.59 -2.63 16 7 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 8 C -0.23 -1.03 5.89 -20.00 -0.12 -1.15 16 9 C 0.56 4.50 7.52 86.62 0.65 5.15 16 10 O -0.53 -7.90 12.85 16.83 0.22 -7.68 16 11 N -0.66 -2.11 5.30 -306.25 -1.62 -3.73 16 12 C 0.08 0.49 6.31 38.26 0.24 0.74 16 13 C -0.06 -0.48 8.00 22.59 0.18 -0.30 16 14 C -0.41 -1.53 4.59 22.34 0.10 -1.43 16 15 Si 1.13 -2.89 12.38 68.60 0.85 -2.04 16 16 C -0.46 1.05 8.65 113.37 0.98 2.03 16 17 C -0.46 -0.71 8.59 113.37 0.97 0.27 16 18 C -0.45 1.49 8.54 113.37 0.97 2.46 16 19 C 0.10 0.44 10.45 84.68 0.89 1.32 16 20 N -0.50 -3.94 10.35 -195.32 -2.02 -5.96 16 21 C 0.08 0.41 11.12 84.86 0.94 1.35 16 22 C -0.01 0.01 8.13 22.50 0.18 0.19 16 23 C -0.20 -0.01 5.27 -19.80 -0.10 -0.11 16 24 C -0.07 0.09 2.37 71.24 0.17 0.26 16 25 O -0.55 -0.08 12.88 -148.98 -1.92 -2.00 16 26 Si 0.96 -3.65 25.49 68.60 1.75 -1.91 16 27 H -0.25 0.81 7.11 99.48 0.71 1.52 16 28 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 29 H -0.23 1.65 6.73 99.48 0.67 2.32 16 30 H 0.07 -0.57 7.65 -2.39 -0.02 -0.59 16 31 H 0.12 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H 0.07 -0.62 7.65 -2.39 -0.02 -0.64 16 33 H 0.17 -0.81 4.50 -2.91 -0.01 -0.82 16 34 H 0.07 -0.43 7.66 -2.39 -0.02 -0.45 16 35 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 36 H 0.11 -0.48 8.14 -2.38 -0.02 -0.50 16 37 H 0.42 -1.57 6.85 -92.71 -0.64 -2.21 16 38 H 0.13 1.22 6.07 -2.91 -0.02 1.20 16 39 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 40 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 42 H 0.06 0.24 7.96 -2.39 -0.02 0.22 16 43 H 0.08 -0.05 7.96 -2.38 -0.02 -0.07 16 44 H 0.06 0.21 7.78 -2.39 -0.02 0.19 16 45 H 0.08 -0.40 7.71 -2.39 -0.02 -0.42 16 46 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 47 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 48 H 0.18 -0.22 7.45 -2.91 -0.02 -0.24 16 49 H 0.18 -0.11 8.06 -2.91 -0.02 -0.14 16 50 H 0.15 -0.90 3.21 -2.91 -0.01 -0.91 16 51 H 0.11 -0.11 7.82 -2.39 -0.02 -0.13 16 52 H 0.39 -2.67 8.70 -74.05 -0.64 -3.31 16 Total: 0.00 -24.44 425.75 4.96 -19.48 By element: Atomic # 1 Polarization: -7.48 SS G_CDS: 0.42 Total: -7.06 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 8.76 Total: 14.63 kcal Atomic # 7 Polarization: -6.04 SS G_CDS: -3.64 Total: -9.69 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -3.18 Total: -13.42 kcal Atomic # 14 Polarization: -6.54 SS G_CDS: 2.60 Total: -3.95 kcal Total: -24.44 4.96 -19.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_12297780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.963 kcal (2) G-P(sol) polarization free energy of solvation -24.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds