Wall clock time and date at job start Sun Mar 7 2021 11:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 109.47168 * 2 1 4 4 C 1.86295 * 109.47357 * 239.99679 * 2 1 3 5 5 C 1.86803 * 109.46827 * 120.00028 * 2 1 3 6 6 C 1.38505 * 120.37999 * 270.02156 * 5 2 1 7 7 C 1.39296 * 118.36279 * 179.97438 * 6 5 2 8 8 N 1.39871 * 120.49291 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00174 * 32.68485 * 8 7 6 10 10 O 1.21586 * 119.99801 * 5.28006 * 9 8 7 11 11 C 1.47687 * 120.00326 * 185.27590 * 9 8 7 12 12 C 1.39648 * 120.11964 * 359.97438 * 11 9 8 13 13 C 1.37855 * 119.87705 * 179.97438 * 12 11 9 14 14 C 1.38633 * 120.12098 * 0.02925 * 13 12 11 15 15 F 1.35106 * 119.87649 * 179.97438 * 14 13 12 16 16 C 1.38681 * 120.24275 * 359.97168 * 14 13 12 17 17 C 1.50701 * 119.93649 * 180.02562 * 16 14 13 18 18 O 1.42896 * 109.47099 * 75.00470 * 17 16 14 19 19 Si 1.86298 * 109.47381 * 314.99764 * 17 16 14 20 20 H 1.48493 * 109.47057 * 179.97438 * 19 17 16 21 21 H 1.48498 * 109.47416 * 300.00276 * 19 17 16 22 22 H 1.48500 * 109.46807 * 60.00298 * 19 17 16 23 23 C 1.37816 * 120.11812 * 359.72075 * 16 14 13 24 24 C 1.38866 * 119.01661 * 0.02562 * 7 6 5 25 25 N 1.31811 * 120.66270 * 359.97438 * 24 7 6 26 26 C 1.31859 * 121.80066 * 0.02562 * 25 24 7 27 27 H 1.08992 * 109.47396 * 299.99801 * 1 2 3 28 28 H 1.08994 * 109.47048 * 60.00597 * 1 2 3 29 29 H 1.09006 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47091 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47004 * 300.00044 * 3 2 1 32 32 H 1.09002 * 109.46941 * 59.99830 * 3 2 1 33 33 H 1.08998 * 109.47779 * 300.00391 * 4 2 1 34 34 H 1.09007 * 109.47175 * 60.00071 * 4 2 1 35 35 H 1.09000 * 109.47104 * 179.97438 * 4 2 1 36 36 H 1.08008 * 120.82006 * 359.95618 * 6 5 2 37 37 H 0.96996 * 120.00094 * 212.68131 * 8 7 6 38 38 H 1.08001 * 120.05984 * 0.03005 * 12 11 9 39 39 H 1.08002 * 119.93436 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.46769 * 194.99994 * 17 16 14 41 41 H 0.96702 * 113.99819 * 179.97438 * 18 17 16 42 42 H 1.08002 * 120.05779 * 180.27592 * 23 16 14 43 43 H 1.08005 * 119.67073 * 180.02562 * 24 7 6 44 44 H 1.07998 * 119.54333 * 180.28030 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7186 -0.1761 2.6948 7 6 3.1821 -0.8749 3.8071 8 7 3.4317 -0.2080 5.0109 9 6 2.6815 0.8559 5.3601 10 8 1.7279 1.1775 4.6777 11 6 3.0176 1.6310 6.5714 12 6 4.1119 1.2634 7.3573 13 6 4.4215 1.9907 8.4867 14 6 3.6484 3.0849 8.8432 15 9 3.9559 3.7939 9.9514 16 6 2.5605 3.4543 8.0664 17 6 1.7251 4.6452 8.4600 18 8 2.4346 5.8470 8.1530 19 14 1.3745 4.5808 10.2885 20 1 0.5519 5.7547 10.6764 21 1 0.6372 3.3319 10.6076 22 1 2.6555 4.6050 11.0393 23 6 2.2459 2.7380 6.9318 24 6 3.3926 -2.2436 3.7030 25 7 3.1581 -2.8756 2.5703 26 6 2.7191 -2.2432 1.4998 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.5739 1.7564 0.0005 31 1 2.1207 2.2702 -0.8899 32 1 2.1206 2.2703 0.8900 33 1 2.1207 -1.9059 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8779 -1.5212 36 1 2.5455 0.8889 2.7431 37 1 4.1446 -0.5111 5.5946 38 1 4.7151 0.4115 7.0802 39 1 5.2674 1.7071 9.0954 40 1 0.7849 4.6275 7.9089 41 1 1.9552 6.6556 8.3799 42 1 1.4011 3.0293 6.3251 43 1 3.7514 -2.7959 4.5590 44 1 2.5347 -2.7981 0.5918 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_12496548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:54:10 Heat of formation + Delta-G solvation = -74.829304 kcal Electronic energy + Delta-G solvation = -27458.020095 eV Core-core repulsion = 23413.893030 eV Total energy + Delta-G solvation = -4044.127065 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.122 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.41597 -42.07777 -40.72491 -39.55812 -37.67581 -36.36071 -33.37868 -32.92708 -32.24068 -30.71104 -29.41564 -28.36875 -28.29459 -27.02019 -25.74622 -24.57375 -23.59255 -23.35560 -21.44779 -19.49713 -18.92616 -18.65509 -18.51200 -17.98926 -17.51644 -17.17395 -16.95540 -16.38004 -16.00059 -15.64210 -15.48354 -15.04266 -14.92765 -14.86919 -14.82141 -14.41712 -14.24908 -14.11171 -13.98192 -13.81511 -13.77578 -13.55646 -13.34067 -13.16872 -13.09676 -12.97037 -12.88657 -12.32284 -12.28558 -12.07771 -11.93149 -11.37121 -11.23911 -11.15016 -10.80307 -10.64825 -10.38582 -10.17328 -10.14629 -9.93352 -9.34542 -0.65381 -0.06152 0.02332 0.26685 1.07226 1.36933 1.43464 1.49442 1.67517 1.76221 1.89213 1.99752 2.07082 2.43332 2.60428 2.89365 2.97574 3.19604 3.35954 3.55619 3.66178 3.73249 3.84632 3.90996 4.06345 4.13202 4.19936 4.32084 4.36764 4.59609 4.70605 4.79370 4.80387 4.84004 4.84946 4.85418 4.91533 4.92029 4.92190 4.97730 5.05289 5.07651 5.13998 5.53154 5.55719 5.63323 5.70038 5.76066 6.16043 6.70442 6.83412 6.97442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.130 2.870 3 C -0.464 4.464 4 C -0.453 4.453 5 C -0.414 4.414 6 C -0.065 4.065 7 C 0.075 3.925 8 N -0.650 5.650 9 C 0.565 3.435 10 O -0.548 6.548 11 C -0.158 4.158 12 C -0.037 4.037 13 C -0.153 4.153 14 C 0.116 3.884 15 F -0.128 7.128 16 C -0.134 4.134 17 C -0.081 4.081 18 O -0.560 6.560 19 Si 0.961 3.039 20 H -0.253 1.253 21 H -0.266 1.266 22 H -0.249 1.249 23 C -0.016 4.016 24 C 0.081 3.919 25 N -0.499 5.499 26 C 0.097 3.903 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.429 0.571 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.101 0.899 41 H 0.400 0.600 42 H 0.148 0.852 43 H 0.179 0.821 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 -0.099 0.140 1.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.317 2.683 3 C -0.571 4.571 4 C -0.562 4.562 5 C -0.455 4.455 6 C -0.093 4.093 7 C -0.021 4.021 8 N -0.297 5.297 9 C 0.355 3.645 10 O -0.427 6.427 11 C -0.161 4.161 12 C -0.055 4.055 13 C -0.172 4.172 14 C 0.097 3.903 15 F -0.106 7.106 16 C -0.135 4.135 17 C -0.191 4.191 18 O -0.369 6.369 19 Si 0.784 3.216 20 H -0.177 1.177 21 H -0.190 1.190 22 H -0.173 1.173 23 C -0.035 4.035 24 C -0.079 4.079 25 N -0.208 5.208 26 C -0.060 4.060 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.155 0.845 37 H 0.270 0.730 38 H 0.195 0.805 39 H 0.191 0.809 40 H 0.119 0.881 41 H 0.251 0.749 42 H 0.166 0.834 43 H 0.196 0.804 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.565 -1.193 0.475 2.024 hybrid contribution -0.164 1.406 0.680 1.571 sum 1.400 0.213 1.155 1.828 Atomic orbital electron populations 1.26300 1.21753 1.04615 1.04367 0.77141 0.65164 0.64482 0.61521 1.26302 1.06464 1.19747 1.04569 1.26149 1.06632 1.08612 1.14805 1.28959 1.03954 1.00931 1.11611 1.21679 0.95370 1.01034 0.91197 1.18970 1.03138 0.93192 0.86835 1.43153 1.36129 1.30027 1.20436 1.18442 0.81409 0.79908 0.84780 1.90809 1.28793 1.68599 1.54456 1.19760 1.00194 0.98972 0.97179 1.21551 0.93754 0.98662 0.91553 1.21445 1.01699 0.94620 0.99417 1.18282 0.95453 0.92198 0.84383 1.91582 1.92129 1.77225 1.49672 1.19438 0.97856 0.99176 0.97052 1.24640 0.97078 0.84748 1.12610 1.86464 1.47490 1.15506 1.87447 0.85785 0.79542 0.81182 0.75136 1.17693 1.19003 1.17254 1.21056 0.98074 0.91550 0.92834 1.22975 0.98573 0.89238 0.97092 1.67681 1.12264 1.40556 1.00260 1.23072 0.93551 0.92486 0.96848 0.92300 0.90208 0.91052 0.91141 0.90160 0.92058 0.90265 0.90185 0.90851 0.84515 0.72996 0.80520 0.80899 0.88135 0.74870 0.83400 0.80381 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.50 8.65 113.37 0.98 1.48 16 2 Si 1.13 -4.39 12.39 68.60 0.85 -3.54 16 3 C -0.46 0.71 8.58 113.37 0.97 1.69 16 4 C -0.45 2.22 8.54 113.37 0.97 3.19 16 5 C -0.41 -0.70 4.59 22.34 0.10 -0.60 16 6 C -0.06 -0.30 8.00 22.59 0.18 -0.12 16 7 C 0.08 0.20 6.31 38.26 0.24 0.44 16 8 N -0.65 1.33 5.30 -305.91 -1.62 -0.29 16 9 C 0.56 1.44 7.53 86.74 0.65 2.09 16 10 O -0.55 -5.35 14.03 -3.99 -0.06 -5.40 16 11 C -0.16 0.10 5.87 -20.09 -0.12 -0.02 16 12 C -0.04 0.23 9.53 22.52 0.21 0.45 16 13 C -0.15 0.63 10.01 22.27 0.22 0.85 16 14 C 0.12 0.20 6.67 22.47 0.15 0.35 16 15 F -0.13 -0.61 12.82 44.97 0.58 -0.03 16 16 C -0.13 -0.27 4.80 -19.86 -0.10 -0.37 16 17 C -0.08 0.02 2.79 71.24 0.20 0.22 16 18 O -0.56 -0.43 12.86 -148.98 -1.92 -2.35 16 19 Si 0.96 0.47 26.09 68.60 1.79 2.26 16 20 H -0.25 0.03 7.11 99.48 0.71 0.73 16 21 H -0.27 -0.70 7.11 99.48 0.71 0.00 16 22 H -0.25 -1.04 5.28 99.48 0.53 -0.52 16 23 C -0.02 -0.03 9.21 22.52 0.21 0.18 16 24 C 0.08 0.19 11.12 84.85 0.94 1.13 16 25 N -0.50 -2.92 10.35 -195.31 -2.02 -4.94 16 26 C 0.10 0.27 10.46 84.70 0.89 1.16 16 27 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 28 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 29 H 0.07 -0.08 7.96 -2.38 -0.02 -0.10 16 30 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 31 H 0.08 -0.22 7.96 -2.39 -0.02 -0.24 16 32 H 0.06 0.04 7.78 -2.39 -0.02 0.02 16 33 H 0.08 -0.47 7.71 -2.39 -0.02 -0.49 16 34 H 0.08 -0.44 7.96 -2.38 -0.02 -0.46 16 35 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 36 H 0.14 0.78 6.04 -2.91 -0.02 0.77 16 37 H 0.43 -4.33 6.86 -92.71 -0.64 -4.96 16 38 H 0.18 -2.60 6.41 -2.91 -0.02 -2.61 16 39 H 0.17 -1.59 8.06 -2.91 -0.02 -1.61 16 40 H 0.10 -0.45 7.77 -2.39 -0.02 -0.47 16 41 H 0.40 -3.27 8.74 -74.06 -0.65 -3.92 16 42 H 0.15 0.22 7.59 -2.91 -0.02 0.20 16 43 H 0.18 -0.71 8.06 -2.91 -0.02 -0.73 16 44 H 0.18 -0.44 7.46 -2.91 -0.02 -0.46 16 Total: 0.00 -22.30 374.22 4.65 -17.65 By element: Atomic # 1 Polarization: -15.83 SS G_CDS: 0.34 Total: -15.49 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.71 Total: 12.14 kcal Atomic # 7 Polarization: -1.58 SS G_CDS: -3.64 Total: -5.23 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -1.97 Total: -7.75 kcal Atomic # 9 Polarization: -0.61 SS G_CDS: 0.58 Total: -0.03 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.64 Total: -1.28 kcal Total: -22.30 4.65 -17.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_12496548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.182 kcal (2) G-P(sol) polarization free energy of solvation -22.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds