Wall clock time and date at job start Sun Mar 7 2021 11:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86304 * 109.46938 * 2 1 4 4 C 1.86294 * 109.47346 * 239.99914 * 2 1 3 5 5 C 1.86801 * 109.47129 * 119.99543 * 2 1 3 6 6 C 1.38503 * 120.38307 * 269.71982 * 5 2 1 7 7 C 1.39278 * 118.35910 * 180.27049 * 6 5 2 8 8 N 1.39950 * 120.48690 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00027 * 33.08906 * 8 7 6 10 10 O 1.21290 * 120.00018 * 4.96810 * 9 8 7 11 11 C 1.50703 * 120.00296 * 184.95987 * 9 8 7 12 12 N 1.46494 * 109.47294 * 180.02562 * 11 9 8 13 13 C 1.35037 * 125.93278 * 125.00427 * 12 11 9 14 14 C 1.35085 * 107.98207 * 179.97438 * 13 12 11 15 15 C 1.50702 * 126.07615 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.46600 * 105.13089 * 15 14 13 17 17 Si 1.86299 * 109.47006 * 345.13653 * 15 14 13 18 18 H 1.48492 * 109.47323 * 59.99867 * 17 15 14 19 19 H 1.48506 * 109.46727 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47226 * 299.99521 * 17 15 14 21 21 C 1.40843 * 107.84689 * 359.97438 * 14 13 12 22 22 C 1.48421 * 126.03781 * 179.97438 * 21 14 13 23 23 C 1.39321 * 120.12348 * 316.50319 * 22 21 14 24 24 C 1.38020 * 119.88113 * 179.67270 * 23 22 21 25 25 C 1.38314 * 120.11969 * 0.62336 * 24 23 22 26 26 C 1.38324 * 120.23851 * 359.67056 * 25 24 23 27 27 C 1.38015 * 120.12203 * 0.02562 * 26 25 24 28 28 N 1.31626 * 107.92658 * 359.75718 * 21 14 13 29 29 C 1.38851 * 119.02659 * 0.02562 * 7 6 5 30 30 N 1.31812 * 120.65961 * 359.97438 * 29 7 6 31 31 C 1.31855 * 121.80315 * 0.02562 * 30 29 7 32 32 H 1.08997 * 109.47299 * 299.99893 * 1 2 3 33 33 H 1.08999 * 109.47160 * 60.00463 * 1 2 3 34 34 H 1.09004 * 109.46544 * 180.02562 * 1 2 3 35 35 H 1.09006 * 109.47056 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.46703 * 299.99987 * 3 2 1 37 37 H 1.08994 * 109.47606 * 59.99458 * 3 2 1 38 38 H 1.09003 * 109.47201 * 300.00006 * 4 2 1 39 39 H 1.08999 * 109.47299 * 59.99708 * 4 2 1 40 40 H 1.09006 * 109.47630 * 179.97438 * 4 2 1 41 41 H 1.07998 * 120.82150 * 0.26455 * 6 5 2 42 42 H 0.97008 * 120.00304 * 213.09588 * 8 7 6 43 43 H 1.08997 * 109.46930 * 300.00762 * 11 9 8 44 44 H 1.09000 * 109.46571 * 59.99825 * 11 9 8 45 45 H 1.07998 * 126.00786 * 359.93549 * 13 12 11 46 46 H 1.08993 * 109.46943 * 225.13406 * 15 14 13 47 47 H 0.96703 * 114.00852 * 300.00266 * 16 15 14 48 48 H 1.08007 * 120.05329 * 359.97330 * 23 22 21 49 49 H 1.07998 * 119.93891 * 180.31643 * 24 23 22 50 50 H 1.07999 * 119.88333 * 179.69599 * 25 24 23 51 51 H 1.08008 * 119.93906 * 180.02562 * 26 25 24 52 52 H 1.08000 * 120.06274 * 180.02562 * 27 26 25 53 53 H 1.08000 * 119.66534 * 180.02562 * 29 7 6 54 54 H 1.07995 * 119.54488 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5210 5 6 2.4857 -0.8805 1.5253 6 6 2.7247 -0.1749 2.6929 7 6 3.1939 -0.8726 3.8033 8 7 3.4498 -0.2042 5.0058 9 6 2.6961 0.8550 5.3617 10 8 1.7404 1.1736 4.6862 11 6 3.0405 1.6433 6.5991 12 7 2.0776 2.7345 6.7667 13 6 1.3304 2.9701 7.8666 14 6 0.5723 4.0627 7.6295 15 6 -0.4128 4.6838 8.5860 16 8 0.1417 5.8842 9.1279 17 14 -0.7750 3.4880 9.9679 18 1 0.4830 3.1703 10.6900 19 1 -1.7453 4.1004 10.9108 20 1 -1.3511 2.2405 9.4048 21 6 0.8662 4.5183 6.3296 22 6 0.2598 5.6953 5.6589 23 6 -1.1121 5.9209 5.7480 24 6 -1.6698 7.0207 5.1281 25 6 -0.8712 7.8911 4.4085 26 6 0.4906 7.6685 4.3117 27 6 1.0596 6.5753 4.9329 28 7 1.7771 3.7187 5.8164 29 6 3.4041 -2.2412 3.6995 30 7 3.1637 -2.8744 2.5687 31 6 2.7192 -2.2431 1.4998 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 3.5740 1.7565 -0.0005 36 1 2.1206 2.2703 -0.8901 37 1 2.1206 2.2704 0.8899 38 1 2.1207 -1.9059 -1.5211 39 1 2.1207 -0.3645 -2.4111 40 1 3.5741 -0.8778 -1.5213 41 1 2.5516 0.8900 2.7412 42 1 4.1697 -0.5030 5.5833 43 1 3.0022 0.9883 7.4695 44 1 4.0443 2.0561 6.4990 45 1 1.3372 2.3870 8.7756 46 1 -1.3362 4.9170 8.0560 47 1 0.9669 5.7518 9.6143 48 1 -1.7374 5.2390 6.3054 49 1 -2.7324 7.1993 5.2008 50 1 -1.3123 8.7478 3.9208 51 1 1.1097 8.3515 3.7489 52 1 2.1230 6.4027 4.8571 53 1 3.7673 -2.7926 4.5542 54 1 2.5341 -2.7982 0.5921 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_12622748.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:54:21 Heat of formation + Delta-G solvation = 43.841609 kcal Electronic energy + Delta-G solvation = -36255.955120 eV Core-core repulsion = 31704.284887 eV Total energy + Delta-G solvation = -4551.670232 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 410.169 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.59093 -41.78521 -40.25238 -39.74739 -37.68996 -36.30083 -34.89102 -33.10085 -32.41620 -32.06758 -31.53367 -31.02183 -29.49369 -28.75525 -28.40000 -28.30757 -26.11363 -24.99178 -24.43006 -23.65353 -23.40627 -21.90856 -21.60628 -21.01494 -19.32417 -18.66844 -18.26724 -17.91150 -17.63481 -17.16654 -17.09927 -16.67787 -16.29413 -16.18090 -15.78817 -15.65872 -15.49864 -15.19599 -14.97882 -14.91999 -14.58857 -14.40443 -14.32460 -14.23615 -14.11930 -14.02978 -13.90236 -13.84984 -13.69051 -13.44862 -13.31228 -13.25349 -13.15423 -13.03955 -12.49481 -12.41214 -12.20029 -12.09803 -12.07834 -11.96675 -11.79718 -11.57838 -11.41308 -11.22537 -10.87347 -10.71823 -10.43453 -10.23153 -10.19022 -9.87154 -9.80776 -9.40029 -9.33090 -0.08439 0.10745 0.19321 0.46959 0.72744 1.17338 1.26858 1.32160 1.46278 1.55026 1.64343 1.69225 1.83848 1.93276 1.97571 2.00831 2.53605 2.84205 2.88465 3.25023 3.40459 3.61861 3.62576 3.68153 3.80662 3.85254 3.99150 4.04600 4.06847 4.10219 4.15595 4.23572 4.25885 4.33874 4.44261 4.51604 4.55228 4.69893 4.71290 4.74944 4.75111 4.76864 4.86747 4.86882 4.87361 4.97139 5.00203 5.04120 5.10173 5.11075 5.27218 5.47143 5.54190 5.55080 5.57852 5.60113 5.64618 5.71652 5.83092 6.03731 6.19120 6.54085 6.83496 6.87571 6.93899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.125 2.875 3 C -0.464 4.464 4 C -0.449 4.449 5 C -0.415 4.415 6 C -0.066 4.066 7 C 0.077 3.923 8 N -0.651 5.651 9 C 0.494 3.506 10 O -0.538 6.538 11 C 0.115 3.885 12 N -0.362 5.362 13 C 0.067 3.933 14 C -0.264 4.264 15 C -0.049 4.049 16 O -0.554 6.554 17 Si 0.985 3.015 18 H -0.226 1.226 19 H -0.274 1.274 20 H -0.262 1.262 21 C 0.115 3.885 22 C -0.026 4.026 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.110 4.110 28 N -0.290 5.290 29 C 0.082 3.918 30 N -0.499 5.499 31 C 0.097 3.903 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.435 0.565 43 H 0.184 0.816 44 H 0.150 0.850 45 H 0.215 0.785 46 H 0.105 0.895 47 H 0.385 0.615 48 H 0.131 0.869 49 H 0.147 0.853 50 H 0.146 0.854 51 H 0.141 0.859 52 H 0.117 0.883 53 H 0.182 0.818 54 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 -1.973 3.851 5.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.312 2.688 3 C -0.570 4.570 4 C -0.558 4.558 5 C -0.456 4.456 6 C -0.094 4.094 7 C -0.020 4.020 8 N -0.300 5.300 9 C 0.281 3.719 10 O -0.413 6.413 11 C -0.009 4.009 12 N -0.144 5.144 13 C -0.078 4.078 14 C -0.275 4.275 15 C -0.160 4.160 16 O -0.360 6.360 17 Si 0.807 3.193 18 H -0.148 1.148 19 H -0.199 1.199 20 H -0.187 1.187 21 C -0.051 4.051 22 C -0.028 4.028 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.129 4.129 28 N -0.111 5.111 29 C -0.077 4.077 30 N -0.208 5.208 31 C -0.059 4.059 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.146 0.854 42 H 0.276 0.724 43 H 0.201 0.799 44 H 0.167 0.833 45 H 0.231 0.769 46 H 0.122 0.878 47 H 0.234 0.766 48 H 0.148 0.852 49 H 0.164 0.836 50 H 0.164 0.836 51 H 0.159 0.841 52 H 0.135 0.865 53 H 0.199 0.801 54 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.720 -3.362 2.845 5.765 hybrid contribution 0.233 1.026 0.881 1.373 sum 3.953 -2.336 3.726 5.913 Atomic orbital electron populations 1.26310 1.21985 1.04613 1.04113 0.77221 0.65107 0.64383 0.62092 1.26324 1.06454 1.20034 1.04203 1.26087 1.06693 1.08594 1.14391 1.28876 1.04148 1.01021 1.11568 1.21596 0.95613 1.00650 0.91563 1.18956 1.02806 0.93136 0.87061 1.43198 1.35807 1.30413 1.20588 1.21418 0.82148 0.80573 0.87776 1.90843 1.28733 1.67234 1.54490 1.21963 0.93508 0.86785 0.98609 1.48089 1.33203 1.22245 1.10833 1.22822 0.93300 0.98148 0.93550 1.20684 1.08083 1.01572 0.97188 1.24545 0.96494 0.93782 1.01155 1.86503 1.44329 1.31391 1.73790 0.85273 0.81607 0.76294 0.76156 1.14837 1.19883 1.18655 1.20809 0.95763 0.94967 0.93525 1.17949 0.93586 0.92712 0.98520 1.21305 0.93400 0.98325 0.99480 1.21395 1.01264 0.94217 0.97287 1.21570 0.93732 0.99937 0.98454 1.21360 0.95967 0.97449 0.99702 1.21253 0.99677 0.94952 0.97060 1.77703 1.18769 1.01027 1.13602 1.23009 0.98464 0.89195 0.97082 1.67675 1.12185 1.40547 1.00344 1.23044 0.93626 0.92308 0.96941 0.92924 0.90146 0.90840 0.91078 0.90165 0.92841 0.90041 0.90062 0.90674 0.85442 0.72430 0.79905 0.83255 0.76878 0.87753 0.76618 0.85158 0.83555 0.83628 0.84083 0.86539 0.80073 0.80679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.76 8.65 113.37 0.98 0.22 16 2 Si 1.12 -1.75 12.39 68.60 0.85 -0.90 16 3 C -0.46 -0.77 8.58 113.37 0.97 0.20 16 4 C -0.45 1.66 8.54 113.37 0.97 2.63 16 5 C -0.42 -1.43 4.59 22.34 0.10 -1.32 16 6 C -0.07 -0.42 8.01 22.58 0.18 -0.24 16 7 C 0.08 0.20 6.30 38.24 0.24 0.44 16 8 N -0.65 2.90 5.35 -303.18 -1.62 1.28 16 9 C 0.49 0.07 7.63 87.66 0.67 0.74 16 10 O -0.54 -6.30 13.42 -3.06 -0.04 -6.34 16 11 C 0.12 -0.92 6.99 85.64 0.60 -0.32 16 12 N -0.36 -0.60 3.39 -351.93 -1.19 -1.80 16 13 C 0.07 -0.08 9.96 83.47 0.83 0.75 16 14 C -0.26 -1.01 5.35 -19.95 -0.11 -1.12 16 15 C -0.05 -0.06 2.52 71.24 0.18 0.12 16 16 O -0.55 -1.46 12.88 -148.98 -1.92 -3.38 16 17 Si 0.99 -2.74 26.06 68.60 1.79 -0.95 16 18 H -0.23 1.59 7.03 99.48 0.70 2.29 16 19 H -0.27 -0.37 7.11 99.48 0.71 0.34 16 20 H -0.26 0.23 7.11 99.48 0.71 0.93 16 21 C 0.11 1.14 6.66 42.53 0.28 1.42 16 22 C -0.03 -0.27 5.73 -20.04 -0.11 -0.38 16 23 C -0.11 -0.81 8.88 22.48 0.20 -0.61 16 24 C -0.12 -0.58 10.03 22.24 0.22 -0.35 16 25 C -0.12 -0.47 10.04 22.31 0.22 -0.25 16 26 C -0.13 -0.72 10.03 22.24 0.22 -0.50 16 27 C -0.11 -1.02 9.78 22.48 0.22 -0.80 16 28 N -0.29 -3.06 11.69 -48.16 -0.56 -3.62 16 29 C 0.08 0.17 11.12 84.84 0.94 1.11 16 30 N -0.50 -3.09 10.35 -195.33 -2.02 -5.12 16 31 C 0.10 0.37 10.46 84.70 0.89 1.26 16 32 H 0.05 0.29 7.96 -2.39 -0.02 0.27 16 33 H 0.08 0.00 7.96 -2.39 -0.02 -0.02 16 34 H 0.07 0.07 7.96 -2.39 -0.02 0.05 16 35 H 0.07 0.08 7.96 -2.38 -0.02 0.06 16 36 H 0.08 0.01 7.96 -2.38 -0.02 -0.01 16 37 H 0.05 0.29 7.77 -2.39 -0.02 0.27 16 38 H 0.08 -0.41 7.71 -2.39 -0.02 -0.43 16 39 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 40 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 41 H 0.13 1.20 6.06 -2.91 -0.02 1.18 16 42 H 0.44 -6.06 8.82 -92.70 -0.82 -6.88 16 43 H 0.18 -3.43 8.07 -2.39 -0.02 -3.45 16 44 H 0.15 -1.94 8.14 -2.39 -0.02 -1.96 16 45 H 0.21 -2.20 6.35 -2.91 -0.02 -2.22 16 46 H 0.10 0.23 5.60 -2.39 -0.01 0.21 16 47 H 0.39 -1.82 8.70 -74.06 -0.64 -2.46 16 48 H 0.13 0.65 6.28 -2.91 -0.02 0.64 16 49 H 0.15 -0.05 8.06 -2.91 -0.02 -0.08 16 50 H 0.15 -0.17 8.06 -2.91 -0.02 -0.19 16 51 H 0.14 0.17 8.06 -2.91 -0.02 0.14 16 52 H 0.12 1.06 8.06 -2.91 -0.02 1.03 16 53 H 0.18 -0.88 8.06 -2.91 -0.02 -0.90 16 54 H 0.18 -0.28 7.46 -2.91 -0.02 -0.30 16 Total: 0.00 -34.18 453.64 4.22 -29.96 By element: Atomic # 1 Polarization: -12.38 SS G_CDS: 0.24 Total: -12.14 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 8.70 Total: 3.00 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -5.40 Total: -9.25 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.96 Total: -9.72 kcal Atomic # 14 Polarization: -4.49 SS G_CDS: 2.64 Total: -1.85 kcal Total: -34.18 4.22 -29.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_12622748.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.806 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds