Wall clock time and date at job start Sun Mar 7 2021 11:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86290 * 109.47167 * 2 1 4 4 C 1.86308 * 109.47073 * 239.99825 * 2 1 3 5 5 C 1.86799 * 109.46999 * 120.00287 * 2 1 3 6 6 C 1.38503 * 120.37726 * 270.32344 * 5 2 1 7 7 C 1.39296 * 118.35760 * 180.24323 * 6 5 2 8 8 N 1.39876 * 120.49332 * 179.73517 * 7 6 5 9 9 C 1.34782 * 119.99609 * 34.69529 * 8 7 6 10 10 O 1.21636 * 120.00268 * 355.59258 * 9 8 7 11 11 C 1.47259 * 119.99695 * 175.59355 * 9 8 7 12 12 C 1.39892 * 120.05148 * 0.02562 * 11 9 8 13 13 C 1.36420 * 120.18457 * 179.97438 * 12 11 9 14 14 C 1.39919 * 120.28154 * 0.02562 * 13 12 11 15 15 C 1.47569 * 119.95011 * 179.97438 * 14 13 12 16 16 C 1.36106 * 125.95115 * 0.02562 * 15 14 13 17 17 C 1.40794 * 106.73800 * 179.97438 * 16 15 14 18 18 C 1.34840 * 107.04921 * 359.97438 * 17 16 15 19 19 C 1.50698 * 125.65191 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47262 * 300.00132 * 19 18 17 21 21 Si 1.86302 * 109.46938 * 180.02562 * 19 18 17 22 22 H 1.48498 * 109.47073 * 299.99877 * 21 19 18 23 23 H 1.48501 * 109.47133 * 59.99951 * 21 19 18 24 24 H 1.48498 * 109.46981 * 179.97438 * 21 19 18 25 25 O 1.34231 * 108.69146 * 359.73581 * 18 17 16 26 26 C 1.39607 * 120.09256 * 0.02562 * 14 13 12 27 27 C 1.38267 * 119.81471 * 359.71933 * 26 14 13 28 28 O 1.35681 * 120.14310 * 180.29699 * 27 26 14 29 29 C 1.38874 * 119.02195 * 359.45814 * 7 6 5 30 30 N 1.31811 * 120.65581 * 0.25770 * 29 7 6 31 31 C 1.31861 * 121.80368 * 0.02562 * 30 29 7 32 32 H 1.08999 * 109.47475 * 299.99784 * 1 2 3 33 33 H 1.08996 * 109.47215 * 60.00642 * 1 2 3 34 34 H 1.09008 * 109.47075 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47099 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.47093 * 300.00107 * 3 2 1 37 37 H 1.08996 * 109.47248 * 59.99811 * 3 2 1 38 38 H 1.09003 * 109.46902 * 300.00071 * 4 2 1 39 39 H 1.08994 * 109.46973 * 59.99821 * 4 2 1 40 40 H 1.08998 * 109.46660 * 179.97438 * 4 2 1 41 41 H 1.08003 * 120.82339 * 359.97438 * 6 5 2 42 42 H 0.97001 * 120.00220 * 214.98115 * 8 7 6 43 43 H 1.08001 * 119.90383 * 359.97402 * 12 11 9 44 44 H 1.08000 * 119.85395 * 180.02562 * 13 12 11 45 45 H 1.07998 * 126.62822 * 0.02562 * 16 15 14 46 46 H 1.07999 * 126.47652 * 179.97438 * 17 16 15 47 47 H 1.08998 * 109.47294 * 60.00418 * 19 18 17 48 48 H 0.96699 * 114.00295 * 180.02562 * 20 19 18 49 49 H 1.08004 * 120.09265 * 179.97438 * 26 14 13 50 50 H 0.96703 * 113.99576 * 270.23870 * 28 27 26 51 51 H 1.07997 * 119.66976 * 180.28035 * 29 7 6 52 52 H 1.07998 * 119.54145 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4856 -0.8807 1.5252 6 6 2.7127 -0.1772 2.6965 7 6 3.1819 -0.8751 3.8070 8 7 3.4317 -0.2082 5.0109 9 6 2.6522 0.8268 5.3821 10 8 1.7828 1.2323 4.6344 11 6 2.8532 1.4666 6.6932 12 6 3.8531 1.0014 7.5538 13 6 4.0420 1.5925 8.7687 14 6 3.2375 2.6672 9.1632 15 6 3.4479 3.3007 10.4793 16 6 4.3837 2.9400 11.3993 17 6 4.2279 3.8071 12.4976 18 6 3.2161 4.6465 12.1981 19 6 2.6967 5.7481 13.0857 20 8 2.2285 5.1888 14.3145 21 14 1.2943 6.6262 12.2296 22 1 1.7803 7.2073 10.9524 23 1 0.2022 5.6595 11.9498 24 1 0.7820 7.7112 13.1045 25 8 2.7516 4.3417 10.9761 26 6 2.2355 3.1401 8.3140 27 6 2.0441 2.5474 7.0795 28 8 1.0761 3.0056 6.2464 29 6 3.3925 -2.2438 3.7029 30 7 3.1579 -2.8757 2.5702 31 6 2.7189 -2.2433 1.4997 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 3.5740 1.7563 -0.0005 36 1 2.1206 2.2702 -0.8900 37 1 2.1207 2.2702 0.8899 38 1 2.1207 -1.9060 -1.5211 39 1 2.1207 -0.3645 -2.4111 40 1 3.5740 -0.8779 -1.5213 41 1 2.5347 0.8869 2.7463 42 1 4.1684 -0.4879 5.5765 43 1 4.4773 0.1721 7.2555 44 1 4.8159 1.2293 9.4287 45 1 5.1066 2.1432 11.3048 46 1 4.8091 3.8011 13.4078 47 1 3.4983 6.4574 13.2914 48 1 1.8787 5.8419 14.9359 49 1 1.6142 3.9694 8.6187 50 1 0.2177 2.5771 6.3676 51 1 3.7517 -2.7960 4.5588 52 1 2.5384 -2.7975 0.5905 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_12807986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:54:56 Heat of formation + Delta-G solvation = -59.692300 kcal Electronic energy + Delta-G solvation = -35307.102563 eV Core-core repulsion = 30555.505439 eV Total energy + Delta-G solvation = -4751.597124 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 412.146 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.78124 -42.12959 -40.95073 -39.63239 -38.11234 -37.85269 -36.20511 -34.33398 -33.74545 -32.92297 -31.55173 -31.14913 -30.26657 -29.43569 -28.38997 -28.31203 -27.13681 -25.15362 -24.50356 -24.13873 -23.69243 -22.42591 -21.92138 -21.32498 -19.99184 -19.15420 -18.74426 -18.32467 -18.06338 -17.90343 -17.25195 -17.14577 -16.70935 -16.59707 -16.35629 -16.18679 -15.87443 -15.46407 -15.03941 -14.85920 -14.78192 -14.71745 -14.50710 -14.30963 -14.17010 -14.05005 -14.00003 -13.84781 -13.79308 -13.63449 -13.58684 -13.35929 -13.19519 -13.11035 -12.98857 -12.83124 -12.71371 -12.27253 -12.08070 -12.05643 -11.99610 -11.82810 -11.22943 -11.17813 -11.07512 -10.81968 -10.77577 -10.45159 -10.38461 -10.14359 -10.04113 -9.40094 -9.03470 -0.91750 -0.02121 0.06652 0.25049 0.59683 0.99391 1.23305 1.36165 1.46389 1.64833 1.67622 1.76240 1.81006 1.87916 1.98265 2.06173 2.53469 2.58915 2.87395 2.93539 3.21167 3.42736 3.53240 3.65502 3.67289 3.77379 3.85705 3.92788 3.97468 4.12204 4.15362 4.27456 4.29581 4.36104 4.37830 4.58594 4.65377 4.76268 4.76682 4.77689 4.81349 4.83129 4.86241 4.90807 4.91370 4.95977 5.03244 5.06727 5.09010 5.14838 5.15154 5.41113 5.46430 5.53094 5.60609 5.68970 5.76674 5.94682 6.19256 6.59991 6.71980 6.88513 6.97050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.129 2.871 3 C -0.466 4.466 4 C -0.451 4.451 5 C -0.416 4.416 6 C -0.065 4.065 7 C 0.073 3.927 8 N -0.652 5.652 9 C 0.559 3.441 10 O -0.537 6.537 11 C -0.180 4.180 12 C -0.047 4.047 13 C -0.108 4.108 14 C 0.031 3.969 15 C -0.005 4.005 16 C -0.165 4.165 17 C -0.178 4.178 18 C -0.021 4.021 19 C -0.035 4.035 20 O -0.557 6.557 21 Si 0.972 3.028 22 H -0.269 1.269 23 H -0.285 1.285 24 H -0.227 1.227 25 O -0.188 6.188 26 C -0.158 4.158 27 C 0.168 3.832 28 O -0.494 6.494 29 C 0.083 3.917 30 N -0.499 5.499 31 C 0.098 3.902 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.428 0.572 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.188 0.812 46 H 0.173 0.827 47 H 0.129 0.871 48 H 0.409 0.591 49 H 0.133 0.867 50 H 0.409 0.591 51 H 0.180 0.820 52 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 0.238 4.464 6.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.316 2.684 3 C -0.572 4.572 4 C -0.560 4.560 5 C -0.456 4.456 6 C -0.093 4.093 7 C -0.024 4.024 8 N -0.300 5.300 9 C 0.349 3.651 10 O -0.414 6.414 11 C -0.184 4.184 12 C -0.066 4.066 13 C -0.126 4.126 14 C 0.030 3.970 15 C -0.054 4.054 16 C -0.184 4.184 17 C -0.197 4.197 18 C -0.070 4.070 19 C -0.146 4.146 20 O -0.368 6.368 21 Si 0.796 3.204 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.150 1.150 25 O -0.087 6.087 26 C -0.177 4.177 27 C 0.121 3.879 28 O -0.307 6.307 29 C -0.077 4.077 30 N -0.208 5.208 31 C -0.059 4.059 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.269 0.731 43 H 0.194 0.806 44 H 0.191 0.809 45 H 0.205 0.795 46 H 0.190 0.810 47 H 0.146 0.854 48 H 0.262 0.738 49 H 0.151 0.849 50 H 0.270 0.730 51 H 0.197 0.803 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.592 0.026 2.991 4.675 hybrid contribution -0.331 0.958 1.252 1.610 sum 3.261 0.984 4.243 5.441 Atomic orbital electron populations 1.26293 1.21714 1.04656 1.04312 0.77157 0.65224 0.64295 0.61730 1.26336 1.06424 1.20079 1.04395 1.26119 1.06644 1.08628 1.14604 1.28958 1.04138 1.00985 1.11562 1.21777 0.95210 1.01133 0.91196 1.19002 1.03343 0.93173 0.86857 1.43144 1.33530 1.32412 1.20899 1.18354 0.80863 0.79407 0.86511 1.90819 1.34155 1.62461 1.53977 1.20318 1.02974 0.99330 0.95769 1.21217 0.94525 0.98824 0.91994 1.21070 0.99832 0.94325 0.97345 1.18002 0.95321 0.94956 0.88682 1.20604 0.97313 0.91384 0.96077 1.22301 1.00631 1.02830 0.92643 1.21846 0.99935 0.96629 1.01331 1.22040 0.98125 1.01986 0.84870 1.23755 1.07669 0.94869 0.88273 1.86410 1.83849 1.39463 1.27072 0.85338 0.76967 0.78589 0.79556 1.19369 1.20991 1.14958 1.83904 1.52587 1.42718 1.29443 1.21546 1.00687 1.02361 0.93111 1.18418 0.90855 0.90600 0.88001 1.84726 1.22737 1.64417 1.58847 1.22992 0.98423 0.89164 0.97079 1.67687 1.12311 1.40511 1.00252 1.23080 0.93478 0.92405 0.96892 0.92449 0.90190 0.90908 0.91217 0.90174 0.92392 0.90108 0.90127 0.90807 0.84586 0.73133 0.80640 0.80859 0.79526 0.80964 0.85384 0.73815 0.84932 0.73049 0.80283 0.80589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 -0.08 8.65 113.37 0.98 0.90 16 2 Si 1.13 -2.79 12.38 68.60 0.85 -1.94 16 3 C -0.47 -0.28 8.59 113.37 0.97 0.70 16 4 C -0.45 1.85 8.54 113.37 0.97 2.82 16 5 C -0.42 -1.28 4.59 22.34 0.10 -1.18 16 6 C -0.07 -0.42 8.04 22.59 0.18 -0.24 16 7 C 0.07 0.30 6.32 38.26 0.24 0.55 16 8 N -0.65 0.18 5.29 -306.25 -1.62 -1.44 16 9 C 0.56 2.82 7.61 86.61 0.66 3.48 16 10 O -0.54 -6.56 12.61 16.85 0.21 -6.35 16 11 C -0.18 -0.33 5.89 -19.97 -0.12 -0.45 16 12 C -0.05 0.27 9.47 22.25 0.21 0.48 16 13 C -0.11 0.54 9.48 22.25 0.21 0.75 16 14 C 0.03 0.05 5.87 -20.08 -0.12 -0.07 16 15 C 0.00 -0.02 7.02 24.24 0.17 0.15 16 16 C -0.17 0.09 10.25 22.40 0.23 0.32 16 17 C -0.18 -0.17 10.76 22.11 0.24 0.06 16 18 C -0.02 -0.07 6.25 24.90 0.16 0.09 16 19 C -0.04 0.08 2.98 71.24 0.21 0.29 16 20 O -0.56 1.39 12.84 -148.98 -1.91 -0.52 16 21 Si 0.97 -0.11 27.38 68.60 1.88 1.76 16 22 H -0.27 -0.97 7.11 99.48 0.71 -0.26 16 23 H -0.28 -1.76 7.11 99.48 0.71 -1.06 16 24 H -0.23 0.75 7.11 99.48 0.71 1.45 16 25 O -0.19 -1.26 8.78 -6.06 -0.05 -1.31 16 26 C -0.16 -0.71 9.65 22.61 0.22 -0.50 16 27 C 0.17 0.88 6.71 22.81 0.15 1.04 16 28 O -0.49 -3.67 11.56 -69.00 -0.80 -4.46 16 29 C 0.08 0.26 11.12 84.85 0.94 1.21 16 30 N -0.50 -3.28 10.35 -195.31 -2.02 -5.31 16 31 C 0.10 0.36 10.46 84.70 0.89 1.25 16 32 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 33 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 34 H 0.07 -0.02 7.96 -2.38 -0.02 -0.04 16 35 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 36 H 0.08 -0.07 7.96 -2.38 -0.02 -0.09 16 37 H 0.06 0.20 7.78 -2.39 -0.02 0.19 16 38 H 0.08 -0.43 7.71 -2.39 -0.02 -0.45 16 39 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 40 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 41 H 0.14 1.20 5.89 -2.91 -0.02 1.18 16 42 H 0.43 -3.62 6.84 -92.71 -0.63 -4.25 16 43 H 0.18 -2.46 6.39 -2.91 -0.02 -2.48 16 44 H 0.17 -2.02 6.95 -2.91 -0.02 -2.04 16 45 H 0.19 -1.44 7.24 -2.91 -0.02 -1.46 16 46 H 0.17 -0.51 8.06 -2.91 -0.02 -0.53 16 47 H 0.13 -1.10 7.96 -2.39 -0.02 -1.12 16 48 H 0.41 -5.12 8.74 -74.06 -0.65 -5.77 16 49 H 0.13 0.73 7.90 -2.91 -0.02 0.70 16 50 H 0.41 0.23 9.06 -74.06 -0.67 -0.44 16 51 H 0.18 -0.60 8.06 -2.91 -0.02 -0.62 16 52 H 0.18 -0.33 7.45 -2.91 -0.02 -0.35 16 Total: 0.00 -29.86 442.57 3.85 -26.02 By element: Atomic # 1 Polarization: -17.90 SS G_CDS: -0.19 Total: -18.09 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 7.50 Total: 11.64 kcal Atomic # 7 Polarization: -3.11 SS G_CDS: -3.64 Total: -6.75 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -2.55 Total: -12.64 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.73 Total: -0.18 kcal Total: -29.86 3.85 -26.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_12807986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.674 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds