Wall clock time and date at job start Sun Mar 7 2021 12:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37896 * 126.45597 * 2 1 4 4 C 1.46639 * 126.23546 * 359.97438 * 3 2 1 5 5 O 1.21705 * 119.99950 * 359.71428 * 4 3 2 6 6 N 1.34780 * 120.00144 * 179.44265 * 4 3 2 7 7 C 1.39863 * 119.99850 * 175.01322 * 6 4 3 8 8 C 1.39263 * 120.48872 * 327.11137 * 7 6 4 9 9 C 1.38544 * 118.35551 * 179.80838 * 8 7 6 10 10 Si 1.86796 * 120.37846 * 180.19705 * 9 8 7 11 11 C 1.86296 * 109.47420 * 270.25407 * 10 9 8 12 12 C 1.86303 * 109.47333 * 30.25902 * 10 9 8 13 13 C 1.86301 * 109.47021 * 150.25661 * 10 9 8 14 14 C 1.38234 * 119.24009 * 0.45211 * 9 8 7 15 15 N 1.31883 * 120.92376 * 359.78743 * 14 9 8 16 16 C 1.31787 * 121.80512 * 359.97438 * 15 14 9 17 17 N 1.37652 * 107.52844 * 179.71751 * 3 2 1 18 18 C 1.35546 * 108.64557 * 0.25803 * 17 3 2 19 19 C 1.50698 * 125.56263 * 179.97438 * 18 17 3 20 20 O 1.42891 * 109.47013 * 119.97817 * 19 18 17 21 21 Si 1.86309 * 109.47232 * 359.97438 * 19 18 17 22 22 H 1.48502 * 109.46634 * 60.00275 * 21 19 18 23 23 H 1.48501 * 109.46993 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47075 * 300.00175 * 21 19 18 25 25 C 1.35448 * 108.87494 * 0.02562 * 18 17 3 26 26 H 1.08998 * 109.47351 * 90.00092 * 1 2 3 27 27 H 1.09004 * 109.46847 * 210.00057 * 1 2 3 28 28 H 1.09000 * 109.47136 * 329.99843 * 1 2 3 29 29 H 0.96996 * 119.99493 * 355.00655 * 6 4 3 30 30 H 1.07997 * 120.82022 * 0.02562 * 8 7 6 31 31 H 1.09003 * 109.47148 * 60.00172 * 11 10 9 32 32 H 1.08997 * 109.47601 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47505 * 300.00773 * 11 10 9 34 34 H 1.08994 * 109.46777 * 59.99548 * 12 10 9 35 35 H 1.08997 * 109.47239 * 180.02562 * 12 10 9 36 36 H 1.08998 * 109.46887 * 300.00003 * 12 10 9 37 37 H 1.09001 * 109.47453 * 59.99939 * 13 10 9 38 38 H 1.09001 * 109.47369 * 180.02562 * 13 10 9 39 39 H 1.09004 * 109.47495 * 300.00128 * 13 10 9 40 40 H 1.07999 * 119.53421 * 179.76838 * 14 9 8 41 41 H 1.07991 * 119.67667 * 179.97438 * 16 15 14 42 42 H 0.97004 * 125.67755 * 180.28148 * 17 3 2 43 43 H 1.09001 * 109.46942 * 239.98388 * 19 18 17 44 44 H 0.96702 * 114.00594 * 299.99796 * 20 19 18 45 45 H 1.07995 * 126.06798 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.1091 0.0000 4 6 1.8900 2.5091 -0.0005 5 8 0.7027 2.7765 -0.0063 6 7 2.8038 3.4998 0.0109 7 6 2.3920 4.8322 -0.0949 8 6 1.2717 5.1676 -0.8510 9 6 0.9009 6.5006 -0.9222 10 14 -0.5955 7.0131 -1.9159 11 6 -0.0811 7.3821 -3.6679 12 6 -1.8455 5.6316 -1.9135 13 6 -1.3527 8.5368 -1.1571 14 6 1.6541 7.4476 -0.2539 15 7 2.7131 7.0979 0.4501 16 6 3.0979 5.8412 0.5481 17 7 3.6284 0.6626 0.0065 18 6 3.6218 -0.6928 0.0046 19 6 4.8433 -1.5753 0.0095 20 8 4.8294 -2.4014 1.1754 21 14 6.3753 -0.5151 0.0178 22 1 6.3782 0.3410 1.2312 23 1 7.5790 -1.3847 0.0233 24 1 6.3897 0.3434 -1.1938 25 6 2.3380 -1.1247 -0.0035 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 3.7470 3.2886 0.0926 30 1 0.7039 4.4070 -1.3662 31 1 0.3619 6.4906 -4.1119 32 1 -0.9542 7.6815 -4.2477 33 1 0.6503 8.1903 -3.6694 34 1 -2.1465 5.4158 -0.8884 35 1 -2.7185 5.9305 -2.4936 36 1 -1.4025 4.7401 -2.3574 37 1 -0.6214 9.3452 -1.1584 38 1 -2.2262 8.8357 -1.7366 39 1 -1.6537 8.3211 -0.1319 40 1 1.3716 8.4885 -0.3092 41 1 3.9709 5.5935 1.1335 42 1 4.4191 1.2245 0.0118 43 1 4.8412 -2.2036 -0.8812 44 1 4.8305 -1.9081 2.0071 45 1 2.0137 -2.1548 -0.0064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915418_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:09:16 Heat of formation + Delta-G solvation = -30.883888 kcal Electronic energy + Delta-G solvation = -26092.654039 eV Core-core repulsion = 22427.149177 eV Total energy + Delta-G solvation = -3665.504862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81561 -41.53521 -39.89169 -37.89191 -36.32489 -33.75037 -33.03859 -31.97553 -30.66504 -29.51939 -28.49186 -28.41552 -28.38203 -27.05049 -24.79281 -24.11993 -22.37483 -21.71383 -20.58669 -20.01115 -18.48752 -18.11977 -17.78481 -17.27272 -16.97652 -16.66400 -16.01701 -15.74402 -15.42551 -15.00442 -14.96842 -14.63632 -14.55458 -14.24260 -14.11590 -14.00848 -13.92736 -13.82947 -13.58218 -13.48242 -13.41391 -13.25449 -13.22300 -13.07672 -13.02636 -12.70201 -12.51793 -12.24478 -12.02483 -11.88776 -11.27277 -11.12159 -10.90987 -10.72800 -10.37629 -10.11723 -9.89127 -9.48171 -9.18339 -0.12751 0.18989 0.43973 0.76143 1.05361 1.08968 1.51408 1.55054 1.58708 1.70633 1.79965 1.86085 1.93137 2.17734 2.51003 2.91925 3.17989 3.47107 3.53289 3.60599 3.86501 4.06418 4.14876 4.17584 4.28209 4.32295 4.37144 4.67706 4.69730 4.70779 4.74231 4.74308 4.80198 4.81370 4.84094 4.94855 5.04454 5.05278 5.14547 5.17396 5.37101 5.44586 5.52460 5.55464 5.60503 5.77821 5.81345 6.01797 6.15595 6.30850 6.84998 7.01201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.058 4.058 3 C -0.059 4.059 4 C 0.592 3.408 5 O -0.500 6.500 6 N -0.674 5.674 7 C 0.084 3.916 8 C -0.044 4.044 9 C -0.406 4.406 10 Si 1.068 2.932 11 C -0.449 4.449 12 C -0.448 4.448 13 C -0.449 4.449 14 C 0.110 3.890 15 N -0.472 5.472 16 C 0.086 3.914 17 N -0.543 5.543 18 C 0.020 3.980 19 C -0.051 4.051 20 O -0.528 6.528 21 Si 0.920 3.080 22 H -0.247 1.247 23 H -0.233 1.233 24 H -0.246 1.246 25 C -0.169 4.169 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.404 0.596 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.409 0.591 43 H 0.133 0.867 44 H 0.379 0.621 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -0.908 -1.453 2.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 C -0.170 4.170 4 C 0.381 3.619 5 O -0.374 6.374 6 N -0.319 5.319 7 C -0.012 4.012 8 C -0.072 4.072 9 C -0.449 4.449 10 Si 1.259 2.741 11 C -0.556 4.556 12 C -0.556 4.556 13 C -0.557 4.557 14 C -0.047 4.047 15 N -0.181 5.181 16 C -0.074 4.074 17 N -0.143 5.143 18 C -0.096 4.096 19 C -0.163 4.163 20 O -0.333 6.333 21 Si 0.741 3.259 22 H -0.170 1.170 23 H -0.155 1.155 24 H -0.169 1.169 25 C -0.194 4.194 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.240 0.760 30 H 0.163 0.837 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.248 0.752 43 H 0.150 0.850 44 H 0.226 0.774 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.809 0.016 -1.432 3.154 hybrid contribution 0.377 -0.467 0.160 0.621 sum 3.186 -0.451 -1.272 3.460 Atomic orbital electron populations 1.20424 0.88708 1.03391 1.02684 1.20081 0.96146 0.90387 1.00092 1.19934 0.83520 0.92832 1.20749 1.17118 0.85720 0.82941 0.76083 1.90861 1.15592 1.82800 1.48152 1.43309 1.10348 1.04308 1.73923 1.18849 0.98879 0.84001 0.99455 1.21542 0.94642 0.96907 0.94129 1.28467 1.13134 0.95786 1.07476 0.78070 0.63313 0.67106 0.65640 1.26116 1.05897 1.05209 1.18409 1.26111 1.11533 1.13099 1.04895 1.26118 1.07336 1.14786 1.07489 1.22671 0.89815 1.00095 0.92157 1.67658 1.15294 1.18296 1.16823 1.22587 1.00057 0.87810 0.96985 1.42020 1.07058 1.06638 1.58605 1.20982 0.98140 0.82346 1.08119 1.24466 1.00349 0.98507 0.93001 1.86580 1.96756 1.34809 1.15119 0.86100 0.78625 0.79518 0.81684 1.17030 1.15518 1.16909 1.20668 0.90326 0.99250 1.09161 0.91017 0.91414 0.90015 0.76047 0.83687 0.91233 0.90763 0.91075 0.90890 0.90888 0.91133 0.90995 0.90678 0.90910 0.82585 0.82933 0.75238 0.84974 0.77373 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 9.83 36.00 0.35 0.24 16 2 C -0.06 -0.09 6.21 -104.15 -0.65 -0.74 16 3 C -0.06 -0.06 7.05 -81.99 -0.58 -0.63 16 4 C 0.59 1.14 7.55 -12.87 -0.10 1.04 16 5 O -0.50 -2.25 12.50 5.18 0.06 -2.19 16 6 N -0.67 0.10 5.35 -10.95 -0.06 0.04 16 7 C 0.08 0.14 6.31 -83.56 -0.53 -0.39 16 8 C -0.04 -0.09 8.00 -39.09 -0.31 -0.40 16 9 C -0.41 -0.30 4.59 -39.47 -0.18 -0.48 16 10 Si 1.07 -2.07 12.38 -169.99 -2.11 -4.17 16 11 C -0.45 0.62 8.65 101.05 0.87 1.49 16 12 C -0.45 0.22 8.59 101.05 0.87 1.09 16 13 C -0.45 0.76 8.54 101.05 0.86 1.62 16 14 C 0.11 0.17 10.45 -17.53 -0.18 -0.02 16 15 N -0.47 -1.48 10.35 -13.08 -0.14 -1.62 16 16 C 0.09 0.14 11.12 -17.32 -0.19 -0.05 16 17 N -0.54 0.79 5.47 -5.70 -0.03 0.76 16 18 C 0.02 -0.02 6.11 -81.95 -0.50 -0.52 16 19 C -0.05 0.13 2.98 36.00 0.11 0.24 16 20 O -0.53 0.87 12.87 -35.23 -0.45 0.41 16 21 Si 0.92 -3.03 26.25 -169.99 -4.46 -7.49 16 22 H -0.25 0.84 7.11 56.52 0.40 1.24 16 23 H -0.23 0.37 7.11 56.52 0.40 0.77 16 24 H -0.25 0.74 7.11 56.52 0.40 1.14 16 25 C -0.17 -0.06 10.64 -39.98 -0.43 -0.49 16 26 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.08 0.21 6.49 -51.93 -0.34 -0.12 16 29 H 0.40 -1.36 7.96 -40.82 -0.32 -1.69 16 30 H 0.15 0.31 6.07 -52.49 -0.32 -0.01 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 0.00 7.78 -51.93 -0.40 -0.40 16 37 H 0.07 -0.16 7.71 -51.93 -0.40 -0.56 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.16 -0.14 7.45 -52.49 -0.39 -0.53 16 41 H 0.15 -0.16 8.06 -52.49 -0.42 -0.58 16 42 H 0.41 -1.62 5.99 -40.82 -0.24 -1.86 16 43 H 0.13 -0.46 7.96 -51.93 -0.41 -0.87 16 44 H 0.38 -1.76 8.70 45.56 0.40 -1.37 16 45 H 0.15 -0.07 8.06 -52.49 -0.42 -0.49 16 LS Contribution 377.38 15.07 5.69 5.69 Total: 0.00 -8.27 377.38 -7.89 -16.16 By element: Atomic # 1 Polarization: -3.78 SS G_CDS: -5.82 Total: -9.60 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.58 Total: 2.01 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -0.23 Total: -0.82 kcal Atomic # 8 Polarization: -1.39 SS G_CDS: -0.39 Total: -1.77 kcal Atomic # 14 Polarization: -5.10 SS G_CDS: -6.57 Total: -11.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -8.27 -7.89 -16.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.719 kcal (2) G-P(sol) polarization free energy of solvation -8.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds