Wall clock time and date at job start Sun Mar 7 2021 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86298 * 109.47278 * 2 1 4 4 C 1.86301 * 109.46970 * 239.99680 * 2 1 3 5 5 C 1.86812 * 109.46831 * 120.00068 * 2 1 3 6 6 C 1.38496 * 120.37953 * 270.02029 * 5 2 1 7 7 C 1.39281 * 118.36062 * 179.97438 * 6 5 2 8 8 N 1.39952 * 120.48868 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00084 * 32.66132 * 8 7 6 10 10 O 1.21286 * 119.99920 * 5.26167 * 9 8 7 11 11 C 1.50699 * 120.00072 * 185.26168 * 9 8 7 12 12 O 1.42897 * 109.47129 * 180.02562 * 11 9 8 13 13 C 1.35895 * 117.00287 * 180.02562 * 12 11 9 14 14 C 1.38739 * 120.05588 * 359.72403 * 13 12 11 15 15 C 1.38143 * 119.94472 * 179.74757 * 14 13 12 16 16 C 1.38265 * 120.05543 * 0.50700 * 15 14 13 17 17 C 1.50697 * 119.94271 * 179.74948 * 16 15 14 18 18 O 1.42905 * 109.46794 * 245.02283 * 17 16 15 19 19 Si 1.86303 * 109.47186 * 5.01747 * 17 16 15 20 20 H 1.48494 * 109.46861 * 60.00313 * 19 17 16 21 21 H 1.48505 * 109.46862 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47327 * 300.00347 * 19 17 16 23 23 C 1.38268 * 120.11018 * 359.76802 * 16 15 14 24 24 C 1.38135 * 120.05882 * 359.97438 * 23 16 15 25 25 C 1.38842 * 119.02219 * 0.02562 * 7 6 5 26 26 N 1.31821 * 120.66500 * 359.97438 * 25 7 6 27 27 C 1.31855 * 121.79713 * 0.02562 * 26 25 7 28 28 H 1.09005 * 109.47308 * 300.00282 * 1 2 3 29 29 H 1.08998 * 109.47045 * 60.00072 * 1 2 3 30 30 H 1.09005 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46865 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47024 * 299.99941 * 3 2 1 33 33 H 1.09005 * 109.47163 * 60.00197 * 3 2 1 34 34 H 1.08992 * 109.47352 * 299.99971 * 4 2 1 35 35 H 1.09003 * 109.47089 * 60.00716 * 4 2 1 36 36 H 1.09011 * 109.46845 * 180.02562 * 4 2 1 37 37 H 1.08006 * 120.82161 * 359.95578 * 6 5 2 38 38 H 0.97005 * 120.00206 * 212.65783 * 8 7 6 39 39 H 1.08999 * 109.47010 * 300.00381 * 11 9 8 40 40 H 1.09000 * 109.47010 * 59.99831 * 11 9 8 41 41 H 1.08008 * 120.02227 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.96738 * 180.23245 * 15 14 13 43 43 H 1.08993 * 109.47337 * 125.02213 * 17 16 15 44 44 H 0.96699 * 114.00227 * 59.99886 * 18 17 16 45 45 H 1.08004 * 119.96693 * 179.97438 * 23 16 15 46 46 H 1.07994 * 120.03066 * 179.97438 * 24 23 16 47 47 H 1.08005 * 119.67214 * 179.97438 * 25 7 6 48 48 H 1.07995 * 119.54233 * 180.27293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5253 6 6 2.7186 -0.1762 2.6948 7 6 3.1821 -0.8750 3.8069 8 7 3.4318 -0.2076 5.0114 9 6 2.6819 0.8566 5.3603 10 8 1.7312 1.1779 4.6792 11 6 3.0248 1.6472 6.5965 12 8 2.0903 2.7170 6.7522 13 6 2.2593 3.5326 7.8259 14 6 3.2997 3.3044 8.7149 15 6 3.4725 4.1380 9.8028 16 6 2.6033 5.1928 10.0120 17 6 2.7908 6.0972 11.2027 18 8 1.6749 5.9606 12.0850 19 14 4.3536 5.6258 12.1007 20 1 5.5131 5.7677 11.1839 21 1 4.5380 6.5167 13.2744 22 1 4.2551 4.2170 12.5597 23 6 1.5622 5.4189 9.1307 24 6 1.3883 4.5914 8.0383 25 6 3.3926 -2.2434 3.7030 26 7 3.1580 -2.8756 2.5703 27 6 2.7191 -2.2433 1.4997 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5741 1.7563 0.0005 32 1 2.1207 2.2702 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5741 -0.8787 -1.5209 37 1 2.5456 0.8888 2.7431 38 1 4.1446 -0.5110 5.5953 39 1 2.9791 0.9954 7.4690 40 1 4.0312 2.0546 6.4997 41 1 3.9762 2.4779 8.5544 42 1 4.2846 3.9630 10.4930 43 1 2.8631 7.1312 10.8658 44 1 1.5495 5.0639 12.4246 45 1 0.8844 6.2432 9.2965 46 1 0.5747 4.7682 7.3505 47 1 3.7522 -2.7956 4.5587 48 1 2.5348 -2.7981 0.5917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915418_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:10:29 Heat of formation + Delta-G solvation = -77.234597 kcal Electronic energy + Delta-G solvation = -28476.681278 eV Core-core repulsion = 24427.684077 eV Total energy + Delta-G solvation = -4048.997201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04491 -41.31783 -40.19758 -39.06686 -37.20683 -36.25083 -33.10082 -32.54472 -31.89841 -31.46860 -29.55810 -29.38462 -28.44680 -28.39951 -26.32721 -24.91359 -24.35095 -23.71998 -22.43270 -21.72433 -19.67189 -19.28331 -18.34648 -18.10256 -17.78257 -17.67416 -17.16200 -16.84563 -16.56631 -16.12300 -15.73401 -15.58261 -15.37670 -15.11104 -14.93379 -14.83136 -14.50983 -14.25364 -14.11434 -13.95567 -13.91270 -13.83349 -13.65646 -13.60663 -13.40947 -13.26841 -13.24184 -13.07654 -12.37061 -12.31198 -12.21138 -12.12677 -12.04208 -11.91497 -11.64306 -11.27768 -11.13178 -10.93750 -10.45728 -10.38591 -10.13511 -10.11627 -9.38966 -9.30858 -0.04921 0.20657 0.22201 0.27943 1.09863 1.16918 1.26773 1.35817 1.44778 1.60031 1.82564 1.85456 1.93691 2.32910 2.50203 2.58241 2.88983 3.18576 3.43426 3.54444 3.59707 3.62785 3.69391 3.76324 3.79522 3.84732 4.14481 4.17511 4.24822 4.31520 4.36303 4.48195 4.59795 4.69090 4.69711 4.73236 4.73723 4.78146 4.79674 4.87244 5.00910 5.02502 5.07048 5.14962 5.16301 5.43510 5.43749 5.52942 5.56829 5.58959 5.74553 5.96026 6.18835 6.51049 6.75383 6.99480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.070 2.930 3 C -0.451 4.451 4 C -0.449 4.449 5 C -0.407 4.407 6 C -0.046 4.046 7 C 0.082 3.918 8 N -0.666 5.666 9 C 0.515 3.485 10 O -0.491 6.491 11 C 0.042 3.958 12 O -0.288 6.288 13 C 0.133 3.867 14 C -0.205 4.205 15 C -0.084 4.084 16 C -0.156 4.156 17 C -0.076 4.076 18 O -0.539 6.539 19 Si 0.948 3.052 20 H -0.251 1.251 21 H -0.253 1.253 22 H -0.253 1.253 23 C -0.048 4.048 24 C -0.144 4.144 25 C 0.089 3.911 26 N -0.473 5.473 27 C 0.111 3.889 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.415 0.585 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.376 0.624 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.156 0.844 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -0.255 0.992 3.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.261 2.739 3 C -0.559 4.559 4 C -0.557 4.557 5 C -0.449 4.449 6 C -0.074 4.074 7 C -0.014 4.014 8 N -0.314 5.314 9 C 0.301 3.699 10 O -0.363 6.363 11 C -0.036 4.036 12 O -0.200 6.200 13 C 0.088 3.912 14 C -0.224 4.224 15 C -0.102 4.102 16 C -0.156 4.156 17 C -0.187 4.187 18 O -0.344 6.344 19 Si 0.771 3.229 20 H -0.175 1.175 21 H -0.177 1.177 22 H -0.177 1.177 23 C -0.066 4.066 24 C -0.162 4.162 25 C -0.071 4.071 26 N -0.181 5.181 27 C -0.046 4.046 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.162 0.838 38 H 0.251 0.749 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.223 0.777 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.173 0.827 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.885 -0.478 0.722 3.980 hybrid contribution 0.223 0.003 0.569 0.611 sum 4.108 -0.474 1.291 4.332 Atomic orbital electron populations 1.26122 1.20225 1.04702 1.04731 0.78035 0.67036 0.66022 0.62843 1.26137 1.06314 1.18596 1.04826 1.26122 1.06497 1.08160 1.14941 1.28461 1.04615 1.00930 1.10894 1.21535 0.94522 1.01051 0.90256 1.18851 1.03427 0.92900 0.86211 1.43198 1.36359 1.30753 1.21107 1.20231 0.82537 0.80567 0.86541 1.90799 1.26333 1.66499 1.52647 1.22401 0.94285 0.89794 0.97166 1.86157 1.51275 1.39352 1.43242 1.19051 0.94761 0.90937 0.86485 1.21148 1.00421 1.03287 0.97559 1.20840 0.98283 0.94078 0.96991 1.20241 0.97945 0.98332 0.99117 1.24908 0.99813 1.02821 0.91151 1.86525 1.49306 1.34743 1.63806 0.85711 0.76290 0.80614 0.80252 1.17456 1.17726 1.17671 1.20876 0.96122 0.97938 0.91643 1.20549 1.00705 0.94921 1.00063 1.22607 0.98723 0.89067 0.96726 1.67677 1.11393 1.39628 0.99405 1.22683 0.93531 0.91997 0.96365 0.90989 0.90835 0.91091 0.91156 0.90697 0.91054 0.90942 0.90670 0.90968 0.83823 0.74860 0.88298 0.88179 0.85129 0.85837 0.86442 0.77673 0.84495 0.84532 0.82689 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.25 8.65 101.05 0.87 1.12 16 2 Si 1.07 -2.08 12.39 -169.99 -2.11 -4.18 16 3 C -0.45 0.44 8.58 101.05 0.87 1.30 16 4 C -0.45 0.90 8.54 101.05 0.86 1.76 16 5 C -0.41 -0.23 4.59 -39.47 -0.18 -0.41 16 6 C -0.05 -0.08 8.01 -39.10 -0.31 -0.39 16 7 C 0.08 0.07 6.31 -83.54 -0.53 -0.45 16 8 N -0.67 1.18 5.35 -9.77 -0.05 1.12 16 9 C 0.52 0.19 7.67 -10.99 -0.08 0.11 16 10 O -0.49 -2.36 14.19 -14.36 -0.20 -2.56 16 11 C 0.04 -0.09 5.22 36.01 0.19 0.10 16 12 O -0.29 -0.48 9.67 -39.32 -0.38 -0.86 16 13 C 0.13 0.12 6.69 -39.21 -0.26 -0.14 16 14 C -0.21 0.17 9.04 -39.43 -0.36 -0.19 16 15 C -0.08 0.05 8.66 -39.61 -0.34 -0.29 16 16 C -0.16 0.04 5.35 -104.60 -0.56 -0.52 16 17 C -0.08 0.08 2.80 36.00 0.10 0.18 16 18 O -0.54 0.08 12.83 -35.23 -0.45 -0.37 16 19 Si 0.95 -1.19 25.13 -169.99 -4.27 -5.46 16 20 H -0.25 0.18 7.11 56.52 0.40 0.58 16 21 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 22 H -0.25 0.32 7.04 56.52 0.40 0.72 16 23 C -0.05 -0.01 9.68 -39.61 -0.38 -0.39 16 24 C -0.14 -0.14 9.99 -39.43 -0.39 -0.53 16 25 C 0.09 0.09 11.12 -17.33 -0.19 -0.11 16 26 N -0.47 -1.31 10.35 -13.09 -0.14 -1.45 16 27 C 0.11 0.14 10.46 -17.53 -0.18 -0.04 16 28 H 0.07 0.04 7.96 -51.93 -0.41 -0.37 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.01 7.78 -51.93 -0.40 -0.42 16 34 H 0.07 -0.17 7.71 -51.93 -0.40 -0.57 16 35 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 36 H 0.07 -0.13 7.96 -51.92 -0.41 -0.55 16 37 H 0.14 0.30 6.04 -52.48 -0.32 -0.02 16 38 H 0.41 -2.37 8.82 -40.82 -0.36 -2.73 16 39 H 0.10 -0.47 7.65 -51.93 -0.40 -0.87 16 40 H 0.10 -0.48 7.67 -51.93 -0.40 -0.88 16 41 H 0.13 -0.48 6.30 -52.48 -0.33 -0.81 16 42 H 0.12 -0.25 4.86 -52.48 -0.25 -0.51 16 43 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 44 H 0.38 -1.23 8.70 45.56 0.40 -0.84 16 45 H 0.14 -0.12 8.06 -52.48 -0.42 -0.54 16 46 H 0.14 0.06 8.06 -52.49 -0.42 -0.36 16 47 H 0.16 -0.29 8.06 -52.48 -0.42 -0.71 16 48 H 0.16 -0.17 7.46 -52.49 -0.39 -0.57 16 LS Contribution 403.40 15.07 6.08 6.08 Total: 0.00 -10.22 403.40 -8.64 -18.86 By element: Atomic # 1 Polarization: -6.05 SS G_CDS: -6.23 Total: -12.29 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.89 Total: 1.11 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.19 Total: -0.32 kcal Atomic # 8 Polarization: -2.76 SS G_CDS: -1.04 Total: -3.79 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: -6.38 Total: -9.65 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -10.22 -8.64 -18.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.374 kcal (2) G-P(sol) polarization free energy of solvation -10.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds