Wall clock time and date at job start Sun Mar 7 2021 12:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86298 * 109.47278 * 2 1 4 4 C 1.86301 * 109.46970 * 239.99680 * 2 1 3 5 5 C 1.86812 * 109.46831 * 120.00068 * 2 1 3 6 6 C 1.38496 * 120.37953 * 270.02029 * 5 2 1 7 7 C 1.39281 * 118.36062 * 179.97438 * 6 5 2 8 8 N 1.39952 * 120.48868 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00084 * 32.66132 * 8 7 6 10 10 O 1.21286 * 119.99920 * 5.26167 * 9 8 7 11 11 C 1.50699 * 120.00072 * 185.26168 * 9 8 7 12 12 O 1.42897 * 109.47129 * 180.02562 * 11 9 8 13 13 C 1.35895 * 117.00287 * 180.02562 * 12 11 9 14 14 C 1.38739 * 120.05588 * 359.72403 * 13 12 11 15 15 C 1.38143 * 119.94472 * 179.74757 * 14 13 12 16 16 C 1.38265 * 120.05543 * 0.50700 * 15 14 13 17 17 C 1.50697 * 119.94271 * 179.74948 * 16 15 14 18 18 O 1.42905 * 109.46794 * 245.02283 * 17 16 15 19 19 Si 1.86303 * 109.47186 * 5.01747 * 17 16 15 20 20 H 1.48494 * 109.46861 * 60.00313 * 19 17 16 21 21 H 1.48505 * 109.46862 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47327 * 300.00347 * 19 17 16 23 23 C 1.38268 * 120.11018 * 359.76802 * 16 15 14 24 24 C 1.38135 * 120.05882 * 359.97438 * 23 16 15 25 25 C 1.38842 * 119.02219 * 0.02562 * 7 6 5 26 26 N 1.31821 * 120.66500 * 359.97438 * 25 7 6 27 27 C 1.31855 * 121.79713 * 0.02562 * 26 25 7 28 28 H 1.09005 * 109.47308 * 300.00282 * 1 2 3 29 29 H 1.08998 * 109.47045 * 60.00072 * 1 2 3 30 30 H 1.09005 * 109.47458 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46865 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47024 * 299.99941 * 3 2 1 33 33 H 1.09005 * 109.47163 * 60.00197 * 3 2 1 34 34 H 1.08992 * 109.47352 * 299.99971 * 4 2 1 35 35 H 1.09003 * 109.47089 * 60.00716 * 4 2 1 36 36 H 1.09011 * 109.46845 * 180.02562 * 4 2 1 37 37 H 1.08006 * 120.82161 * 359.95578 * 6 5 2 38 38 H 0.97005 * 120.00206 * 212.65783 * 8 7 6 39 39 H 1.08999 * 109.47010 * 300.00381 * 11 9 8 40 40 H 1.09000 * 109.47010 * 59.99831 * 11 9 8 41 41 H 1.08008 * 120.02227 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.96738 * 180.23245 * 15 14 13 43 43 H 1.08993 * 109.47337 * 125.02213 * 17 16 15 44 44 H 0.96699 * 114.00227 * 59.99886 * 18 17 16 45 45 H 1.08004 * 119.96693 * 179.97438 * 23 16 15 46 46 H 1.07994 * 120.03066 * 179.97438 * 24 23 16 47 47 H 1.08005 * 119.67214 * 179.97438 * 25 7 6 48 48 H 1.07995 * 119.54233 * 180.27293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5253 6 6 2.7186 -0.1762 2.6948 7 6 3.1821 -0.8750 3.8069 8 7 3.4318 -0.2076 5.0114 9 6 2.6819 0.8566 5.3603 10 8 1.7312 1.1779 4.6792 11 6 3.0248 1.6472 6.5965 12 8 2.0903 2.7170 6.7522 13 6 2.2593 3.5326 7.8259 14 6 3.2997 3.3044 8.7149 15 6 3.4725 4.1380 9.8028 16 6 2.6033 5.1928 10.0120 17 6 2.7908 6.0972 11.2027 18 8 1.6749 5.9606 12.0850 19 14 4.3536 5.6258 12.1007 20 1 5.5131 5.7677 11.1839 21 1 4.5380 6.5167 13.2744 22 1 4.2551 4.2170 12.5597 23 6 1.5622 5.4189 9.1307 24 6 1.3883 4.5914 8.0383 25 6 3.3926 -2.2434 3.7030 26 7 3.1580 -2.8756 2.5703 27 6 2.7191 -2.2433 1.4997 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5741 1.7563 0.0005 32 1 2.1207 2.2702 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1207 -0.3644 -2.4111 36 1 3.5741 -0.8787 -1.5209 37 1 2.5456 0.8888 2.7431 38 1 4.1446 -0.5110 5.5953 39 1 2.9791 0.9954 7.4690 40 1 4.0312 2.0546 6.4997 41 1 3.9762 2.4779 8.5544 42 1 4.2846 3.9630 10.4930 43 1 2.8631 7.1312 10.8658 44 1 1.5495 5.0639 12.4246 45 1 0.8844 6.2432 9.2965 46 1 0.5747 4.7682 7.3505 47 1 3.7522 -2.7956 4.5587 48 1 2.5348 -2.7981 0.5917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:10:28 Heat of formation + Delta-G solvation = -75.075472 kcal Electronic energy + Delta-G solvation = -28476.587651 eV Core-core repulsion = 24427.684077 eV Total energy + Delta-G solvation = -4048.903575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.04308 -41.28265 -40.22217 -39.03186 -37.14654 -36.29690 -33.13574 -32.49369 -31.84061 -31.45494 -29.46044 -29.30082 -28.36082 -28.29987 -26.25565 -24.93146 -24.34089 -23.69824 -22.38475 -21.70586 -19.59541 -19.25268 -18.28754 -18.10606 -17.76994 -17.60767 -17.12225 -16.82665 -16.51769 -16.05174 -15.68186 -15.59147 -15.34841 -15.02541 -14.90047 -14.88125 -14.45969 -14.22549 -14.08802 -13.87642 -13.82169 -13.79216 -13.59749 -13.51563 -13.36814 -13.19862 -13.11684 -12.99370 -12.28828 -12.19763 -12.13638 -12.09117 -12.04918 -11.91149 -11.56629 -11.27328 -11.13796 -10.82736 -10.41282 -10.37308 -10.17467 -10.06490 -9.40293 -9.26390 -0.07500 0.20613 0.24359 0.28151 1.20561 1.25030 1.29860 1.46984 1.53790 1.68981 1.94091 1.96254 2.04782 2.43724 2.58187 2.63032 2.85789 3.30718 3.57982 3.63869 3.67961 3.80856 3.81936 3.91861 3.96190 3.99017 4.11940 4.24502 4.26807 4.33955 4.40585 4.56835 4.70501 4.76030 4.77008 4.80763 4.82012 4.90108 4.90583 4.94228 5.00924 5.03666 5.11172 5.13109 5.21460 5.48134 5.52570 5.59945 5.65560 5.68389 5.73776 6.09896 6.29243 6.73158 6.84007 6.94806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.130 2.870 3 C -0.464 4.464 4 C -0.452 4.452 5 C -0.415 4.415 6 C -0.067 4.067 7 C 0.074 3.926 8 N -0.648 5.648 9 C 0.513 3.487 10 O -0.545 6.545 11 C 0.040 3.960 12 O -0.318 6.318 13 C 0.121 3.879 14 C -0.201 4.201 15 C -0.090 4.090 16 C -0.160 4.160 17 C -0.078 4.078 18 O -0.555 6.555 19 Si 0.983 3.017 20 H -0.255 1.255 21 H -0.280 1.280 22 H -0.247 1.247 23 C -0.056 4.056 24 C -0.164 4.164 25 C 0.082 3.918 26 N -0.499 5.499 27 C 0.098 3.902 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.435 0.565 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.163 0.837 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.388 0.612 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.181 0.819 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -1.255 1.399 5.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.317 2.683 3 C -0.571 4.571 4 C -0.560 4.560 5 C -0.455 4.455 6 C -0.095 4.095 7 C -0.022 4.022 8 N -0.298 5.298 9 C 0.301 3.699 10 O -0.420 6.420 11 C -0.038 4.038 12 O -0.231 6.231 13 C 0.076 3.924 14 C -0.219 4.219 15 C -0.108 4.108 16 C -0.160 4.160 17 C -0.188 4.188 18 O -0.363 6.363 19 Si 0.807 3.193 20 H -0.179 1.179 21 H -0.206 1.206 22 H -0.171 1.171 23 C -0.074 4.074 24 C -0.182 4.182 25 C -0.077 4.077 26 N -0.208 5.208 27 C -0.059 4.059 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.276 0.724 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.181 0.819 42 H 0.158 0.842 43 H 0.138 0.862 44 H 0.237 0.763 45 H 0.158 0.842 46 H 0.147 0.853 47 H 0.198 0.802 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.438 -1.506 1.167 5.763 hybrid contribution -0.270 0.330 0.469 0.634 sum 5.168 -1.176 1.637 5.547 Atomic orbital electron populations 1.26329 1.22019 1.04591 1.04264 0.77138 0.64991 0.64482 0.61668 1.26308 1.06520 1.19787 1.04471 1.26126 1.06670 1.08590 1.14647 1.28944 1.03948 1.00979 1.11632 1.21658 0.95482 1.00938 0.91383 1.18974 1.03174 0.93202 0.86871 1.43067 1.36359 1.29861 1.20481 1.20795 0.81751 0.80569 0.86805 1.90782 1.28776 1.67978 1.54506 1.22683 0.94857 0.89418 0.96795 1.86109 1.52833 1.40406 1.43749 1.19168 0.95422 0.90965 0.86855 1.21468 1.00009 1.03853 0.96601 1.21094 0.98503 0.93788 0.97368 1.20379 0.97859 0.98683 0.99113 1.25011 0.99887 1.03028 0.90914 1.86492 1.49730 1.36036 1.63995 0.85220 0.75394 0.80047 0.78600 1.17871 1.20581 1.17053 1.20954 0.96648 0.98081 0.91718 1.20663 1.01193 0.95856 1.00529 1.22991 0.98451 0.89188 0.97101 1.67687 1.12274 1.40547 1.00292 1.23074 0.93498 0.92427 0.96892 0.92562 0.90186 0.91020 0.91012 0.90145 0.92299 0.90216 0.90138 0.90747 0.84817 0.72445 0.85034 0.85010 0.81946 0.84208 0.86159 0.76266 0.84239 0.85287 0.80211 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.03 8.65 113.37 0.98 1.02 16 2 Si 1.13 -3.80 12.39 68.60 0.85 -2.95 16 3 C -0.46 0.43 8.58 113.37 0.97 1.40 16 4 C -0.45 2.16 8.54 113.37 0.97 3.13 16 5 C -0.41 -0.85 4.59 22.34 0.10 -0.75 16 6 C -0.07 -0.33 8.01 22.58 0.18 -0.15 16 7 C 0.07 0.17 6.31 38.24 0.24 0.41 16 8 N -0.65 2.53 5.35 -303.20 -1.62 0.90 16 9 C 0.51 0.53 7.67 87.66 0.67 1.21 16 10 O -0.54 -6.31 14.19 15.99 0.23 -6.09 16 11 C 0.04 -0.22 5.22 71.24 0.37 0.15 16 12 O -0.32 -1.19 9.67 -73.33 -0.71 -1.90 16 13 C 0.12 0.24 6.69 22.51 0.15 0.39 16 14 C -0.20 0.64 9.04 22.37 0.20 0.84 16 15 C -0.09 0.23 8.66 22.25 0.19 0.42 16 16 C -0.16 0.10 5.35 -19.85 -0.11 0.00 16 17 C -0.08 0.17 2.80 71.24 0.20 0.37 16 18 O -0.56 0.12 12.83 -148.98 -1.91 -1.79 16 19 Si 0.98 -3.14 25.13 68.60 1.72 -1.41 16 20 H -0.25 0.66 7.11 99.48 0.71 1.37 16 21 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 22 H -0.25 1.04 7.04 99.48 0.70 1.74 16 23 C -0.06 -0.07 9.68 22.25 0.22 0.14 16 24 C -0.16 -0.54 9.99 22.36 0.22 -0.32 16 25 C 0.08 0.16 11.12 84.84 0.94 1.10 16 26 N -0.50 -2.89 10.35 -195.33 -2.02 -4.91 16 27 C 0.10 0.29 10.46 84.70 0.89 1.17 16 28 H 0.06 0.18 7.96 -2.38 -0.02 0.16 16 29 H 0.08 -0.13 7.96 -2.39 -0.02 -0.15 16 30 H 0.07 -0.02 7.96 -2.38 -0.02 -0.04 16 31 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 32 H 0.08 -0.18 7.96 -2.39 -0.02 -0.19 16 33 H 0.06 0.10 7.78 -2.38 -0.02 0.08 16 34 H 0.08 -0.47 7.71 -2.39 -0.02 -0.48 16 35 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 36 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 37 H 0.13 0.88 6.04 -2.91 -0.02 0.87 16 38 H 0.44 -5.64 8.82 -92.70 -0.82 -6.46 16 39 H 0.13 -1.60 7.65 -2.39 -0.02 -1.62 16 40 H 0.13 -1.58 7.67 -2.39 -0.02 -1.60 16 41 H 0.16 -1.71 6.30 -2.91 -0.02 -1.73 16 42 H 0.14 -0.87 4.86 -2.91 -0.01 -0.89 16 43 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 44 H 0.39 -2.59 8.70 -74.06 -0.64 -3.24 16 45 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 46 H 0.13 0.46 8.06 -2.91 -0.02 0.44 16 47 H 0.18 -0.83 8.06 -2.91 -0.02 -0.85 16 48 H 0.18 -0.43 7.46 -2.91 -0.02 -0.45 16 Total: 0.00 -25.91 403.40 4.22 -21.69 By element: Atomic # 1 Polarization: -14.37 SS G_CDS: 0.28 Total: -14.08 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 7.40 Total: 10.54 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -3.65 Total: -4.00 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -2.39 Total: -9.78 kcal Atomic # 14 Polarization: -6.94 SS G_CDS: 2.57 Total: -4.37 kcal Total: -25.91 4.22 -21.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.383 kcal (2) G-P(sol) polarization free energy of solvation -25.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds