Wall clock time and date at job start Sun Mar 7 2021 12:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86298 * 109.47278 * 2 1 4 4 C 1.86301 * 109.46970 * 239.99680 * 2 1 3 5 5 C 1.86812 * 109.46831 * 120.00068 * 2 1 3 6 6 C 1.38496 * 120.37953 * 270.02029 * 5 2 1 7 7 C 1.39281 * 118.36062 * 179.97438 * 6 5 2 8 8 N 1.39952 * 120.48868 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00084 * 32.66132 * 8 7 6 10 10 O 1.21286 * 119.99920 * 5.26167 * 9 8 7 11 11 C 1.50699 * 120.00072 * 185.26168 * 9 8 7 12 12 C 1.52999 * 109.47149 * 180.02562 * 11 9 8 13 13 O 1.42898 * 109.47086 * 180.02562 * 12 11 9 14 14 C 1.35901 * 116.99940 * 179.97438 * 13 12 11 15 15 C 1.38736 * 120.05614 * 359.73056 * 14 13 12 16 16 C 1.38141 * 119.94558 * 179.74145 * 15 14 13 17 17 C 1.38272 * 120.05649 * 0.50486 * 16 15 14 18 18 C 1.50697 * 119.94755 * 179.74395 * 17 16 15 19 19 O 1.42900 * 109.47003 * 245.02453 * 18 17 16 20 20 Si 1.86298 * 109.46846 * 5.02522 * 18 17 16 21 21 H 1.48497 * 109.47385 * 59.99752 * 20 18 17 22 22 H 1.48502 * 109.47098 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47182 * 299.99465 * 20 18 17 24 24 C 1.38273 * 120.10799 * 359.76766 * 17 16 15 25 25 C 1.38146 * 120.05540 * 359.97438 * 24 17 16 26 26 C 1.38842 * 119.02219 * 0.02562 * 7 6 5 27 27 N 1.31821 * 120.66500 * 359.97438 * 26 7 6 28 28 C 1.31855 * 121.79713 * 0.02562 * 27 26 7 29 29 H 1.09005 * 109.47308 * 300.00282 * 1 2 3 30 30 H 1.08998 * 109.47045 * 60.00072 * 1 2 3 31 31 H 1.09005 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46865 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47024 * 299.99941 * 3 2 1 34 34 H 1.09005 * 109.47163 * 60.00197 * 3 2 1 35 35 H 1.08992 * 109.47352 * 299.99971 * 4 2 1 36 36 H 1.09003 * 109.47089 * 60.00716 * 4 2 1 37 37 H 1.09011 * 109.46845 * 180.02562 * 4 2 1 38 38 H 1.08006 * 120.82161 * 359.95578 * 6 5 2 39 39 H 0.97005 * 120.00206 * 212.65783 * 8 7 6 40 40 H 1.08999 * 109.47010 * 300.00381 * 11 9 8 41 41 H 1.09000 * 109.47010 * 59.99831 * 11 9 8 42 42 H 1.09009 * 109.46832 * 300.00029 * 12 11 9 43 43 H 1.09000 * 109.47406 * 59.99947 * 12 11 9 44 44 H 1.08002 * 120.02436 * 359.97438 * 15 14 13 45 45 H 1.07996 * 119.97404 * 180.22736 * 16 15 14 46 46 H 1.08994 * 109.46798 * 125.02361 * 18 17 16 47 47 H 0.96693 * 114.00120 * 60.00169 * 19 18 17 48 48 H 1.07993 * 119.96960 * 179.97438 * 24 17 16 49 49 H 1.08001 * 120.02818 * 179.97438 * 25 24 17 50 50 H 1.08005 * 119.67214 * 179.97438 * 26 7 6 51 51 H 1.07995 * 119.54233 * 180.27293 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5253 6 6 2.7186 -0.1762 2.6948 7 6 3.1821 -0.8750 3.8069 8 7 3.4318 -0.2076 5.0114 9 6 2.6819 0.8566 5.3603 10 8 1.7312 1.1779 4.6792 11 6 3.0248 1.6472 6.5965 12 6 2.0242 2.7927 6.7632 13 8 2.3498 3.5427 7.9351 14 6 1.5532 4.6037 8.2296 15 6 0.4836 4.9198 7.4044 16 6 -0.3278 5.9955 7.7088 17 6 -0.0686 6.7633 8.8291 18 6 -0.9520 7.9398 9.1557 19 8 -0.1941 9.1470 9.0547 20 14 -2.3764 7.9985 7.9564 21 1 -3.1639 6.7439 8.0612 22 1 -3.2465 9.1582 8.2777 23 1 -1.8537 8.1408 6.5736 24 6 1.0001 6.4538 9.6500 25 6 1.8114 5.3758 9.3528 26 6 3.3926 -2.2434 3.7030 27 7 3.1580 -2.8756 2.5703 28 6 2.7191 -2.2433 1.4997 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.5741 1.7563 0.0005 33 1 2.1207 2.2702 -0.8900 34 1 2.1207 2.2703 0.8900 35 1 2.1207 -1.9059 -1.5211 36 1 2.1207 -0.3644 -2.4111 37 1 3.5741 -0.8787 -1.5209 38 1 2.5456 0.8888 2.7431 39 1 4.1446 -0.5110 5.5953 40 1 2.9791 0.9954 7.4690 41 1 4.0312 2.0546 6.4997 42 1 2.0696 3.4445 5.8907 43 1 1.0180 2.3850 6.8601 44 1 0.2834 4.3230 6.5268 45 1 -1.1627 6.2397 7.0688 46 1 -1.3356 7.8353 10.1705 47 1 0.1786 9.3052 8.1766 48 1 1.2008 7.0553 10.5242 49 1 2.6463 5.1347 9.9941 50 1 3.7522 -2.7956 4.5587 51 1 2.5348 -2.7981 0.5917 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_4549602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:10:41 Heat of formation + Delta-G solvation = -84.247555 kcal Electronic energy + Delta-G solvation = -30331.599726 eV Core-core repulsion = 26126.760801 eV Total energy + Delta-G solvation = -4204.838925 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 374.162 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.95352 -41.28689 -40.28324 -39.17659 -37.19095 -36.28506 -33.70039 -32.92687 -32.12716 -31.59837 -30.76879 -29.44063 -28.39537 -28.32185 -26.73242 -25.83910 -24.72512 -24.08016 -23.23592 -22.21008 -21.50220 -19.64612 -18.81209 -18.44475 -17.93379 -17.87406 -17.58681 -17.10091 -16.92764 -16.48289 -16.12738 -15.91042 -15.76479 -15.20428 -15.11741 -14.96236 -14.84526 -14.47154 -14.43598 -14.25133 -14.13028 -13.96869 -13.84647 -13.80041 -13.59606 -13.38439 -13.19089 -13.12317 -12.99774 -12.93545 -12.87986 -12.27197 -12.16385 -12.06538 -12.04930 -11.92603 -11.81782 -11.55704 -11.29449 -11.15112 -10.82739 -10.40140 -10.39326 -10.16582 -10.06327 -9.37161 -9.24129 -0.05913 0.22475 0.25192 0.28227 1.18047 1.36466 1.42582 1.50251 1.51921 1.69791 1.89574 1.96497 2.04754 2.33693 2.58180 2.63621 2.86694 3.41304 3.56810 3.62839 3.65947 3.78417 3.82633 3.83668 3.84669 3.94230 4.12804 4.20717 4.27232 4.30027 4.36236 4.43174 4.58353 4.61684 4.65603 4.75744 4.77002 4.77664 4.81456 4.82592 4.89059 4.89559 4.94748 5.02527 5.07979 5.12238 5.15741 5.25039 5.47816 5.53018 5.60552 5.67680 5.70173 5.74749 6.17563 6.29484 6.71117 6.87888 6.96144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.131 2.869 3 C -0.462 4.462 4 C -0.455 4.455 5 C -0.415 4.415 6 C -0.065 4.065 7 C 0.074 3.926 8 N -0.654 5.654 9 C 0.521 3.479 10 O -0.557 6.557 11 C -0.129 4.129 12 C 0.071 3.929 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.211 4.211 16 C -0.094 4.094 17 C -0.161 4.161 18 C -0.070 4.070 19 O -0.552 6.552 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.254 1.254 24 C -0.054 4.054 25 C -0.156 4.156 26 C 0.077 3.923 27 N -0.501 5.501 28 C 0.095 3.905 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.433 0.567 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.388 0.612 48 H 0.147 0.853 49 H 0.145 0.855 50 H 0.177 0.823 51 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -0.143 -0.273 3.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.318 2.682 3 C -0.569 4.569 4 C -0.563 4.563 5 C -0.455 4.455 6 C -0.093 4.093 7 C -0.022 4.022 8 N -0.302 5.302 9 C 0.310 3.690 10 O -0.435 6.435 11 C -0.168 4.168 12 C -0.005 4.005 13 O -0.233 6.233 14 C 0.078 3.922 15 C -0.230 4.230 16 C -0.112 4.112 17 C -0.161 4.161 18 C -0.181 4.181 19 O -0.359 6.359 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.178 1.178 24 C -0.072 4.072 25 C -0.175 4.175 26 C -0.082 4.082 27 N -0.210 5.210 28 C -0.062 4.062 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.272 0.728 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.237 0.763 48 H 0.165 0.835 49 H 0.163 0.837 50 H 0.194 0.806 51 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.893 -0.815 -0.525 2.127 hybrid contribution 0.433 0.440 0.127 0.630 sum 2.325 -0.375 -0.398 2.389 Atomic orbital electron populations 1.26311 1.21848 1.04562 1.04352 0.77129 0.65073 0.64579 0.61461 1.26282 1.06488 1.19560 1.04607 1.26163 1.06631 1.08595 1.14908 1.28964 1.03918 1.00885 1.11725 1.21668 0.95468 1.01038 0.91138 1.19014 1.02822 0.93148 0.87232 1.43314 1.36388 1.30238 1.20243 1.20926 0.81207 0.80105 0.86776 1.90754 1.29039 1.68501 1.55181 1.21421 1.02453 0.96614 0.96320 1.22458 0.99070 0.92714 0.86245 1.85951 1.52413 1.39861 1.45045 1.19165 0.90411 0.87913 0.94748 1.21373 0.97807 1.01470 1.02301 1.21020 0.98874 0.94768 0.96534 1.20346 0.99512 0.99399 0.96881 1.24875 1.00102 0.82963 1.10197 1.86481 1.71895 1.39330 1.38216 0.85309 0.76823 0.79665 0.78033 1.18576 1.19971 1.17844 1.21028 0.92525 0.94779 0.98909 1.20722 1.02988 0.96556 0.97210 1.22965 0.98733 0.89488 0.97013 1.67668 1.12269 1.40700 1.00322 1.23057 0.93741 0.92571 0.96811 0.92314 0.90212 0.91143 0.91077 0.90162 0.91966 0.90363 0.90178 0.90862 0.84350 0.72750 0.84845 0.84750 0.91357 0.91600 0.84514 0.85242 0.85652 0.76296 0.83536 0.83730 0.80610 0.80829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.61 8.65 113.37 0.98 1.59 16 2 Si 1.13 -4.84 12.39 68.60 0.85 -3.99 16 3 C -0.46 1.09 8.58 113.37 0.97 2.06 16 4 C -0.45 2.27 8.54 113.37 0.97 3.24 16 5 C -0.41 -0.57 4.59 22.34 0.10 -0.47 16 6 C -0.07 -0.24 8.01 22.58 0.18 -0.06 16 7 C 0.07 0.15 6.31 38.24 0.24 0.39 16 8 N -0.65 2.59 5.35 -303.20 -1.62 0.96 16 9 C 0.52 -0.64 7.59 87.66 0.67 0.03 16 10 O -0.56 -3.76 13.67 -3.05 -0.04 -3.81 16 11 C -0.13 0.88 6.07 29.85 0.18 1.06 16 12 C 0.07 -0.09 4.03 71.98 0.29 0.20 16 13 O -0.32 -0.54 10.14 -92.43 -0.94 -1.47 16 14 C 0.12 0.40 6.69 22.51 0.15 0.55 16 15 C -0.21 -0.61 9.04 22.37 0.20 -0.41 16 16 C -0.09 -0.19 8.66 22.25 0.19 0.00 16 17 C -0.16 -0.19 5.35 -19.85 -0.11 -0.30 16 18 C -0.07 0.06 2.80 71.23 0.20 0.26 16 19 O -0.55 -0.21 12.83 -148.98 -1.91 -2.12 16 20 Si 0.98 -0.36 25.13 68.60 1.72 1.37 16 21 H -0.26 -0.33 7.11 99.48 0.71 0.37 16 22 H -0.27 -0.81 7.11 99.48 0.71 -0.11 16 23 H -0.25 0.06 7.04 99.48 0.70 0.76 16 24 C -0.05 -0.05 9.68 22.26 0.22 0.16 16 25 C -0.16 -0.28 9.99 22.37 0.22 -0.05 16 26 C 0.08 0.19 11.12 84.84 0.94 1.13 16 27 N -0.50 -3.07 10.35 -195.33 -2.02 -5.09 16 28 C 0.09 0.28 10.46 84.70 0.89 1.16 16 29 H 0.06 0.08 7.96 -2.38 -0.02 0.06 16 30 H 0.08 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H 0.07 -0.09 7.96 -2.38 -0.02 -0.10 16 32 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 33 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.06 -0.03 7.78 -2.38 -0.02 -0.05 16 35 H 0.08 -0.45 7.71 -2.39 -0.02 -0.47 16 36 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 37 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 38 H 0.14 0.59 6.04 -2.91 -0.02 0.58 16 39 H 0.43 -4.97 8.82 -92.70 -0.82 -5.78 16 40 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 41 H 0.13 -1.45 8.14 -2.39 -0.02 -1.47 16 42 H 0.07 -0.02 7.61 -2.38 -0.02 -0.04 16 43 H 0.07 0.02 7.63 -2.39 -0.02 0.00 16 44 H 0.14 0.16 6.30 -2.91 -0.02 0.14 16 45 H 0.13 -0.03 4.86 -2.91 -0.01 -0.04 16 46 H 0.13 -0.34 7.96 -2.39 -0.02 -0.36 16 47 H 0.39 -2.20 8.70 -74.06 -0.64 -2.84 16 48 H 0.15 -0.27 8.06 -2.91 -0.02 -0.30 16 49 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 50 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 51 H 0.17 -0.39 7.46 -2.91 -0.02 -0.41 16 Total: 0.00 -21.25 424.35 3.77 -17.47 By element: Atomic # 1 Polarization: -14.14 SS G_CDS: 0.25 Total: -13.89 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 7.49 Total: 10.56 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -3.65 Total: -4.13 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -2.89 Total: -7.39 kcal Atomic # 14 Polarization: -5.19 SS G_CDS: 2.57 Total: -2.62 kcal Total: -21.25 3.77 -17.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4549602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.773 kcal (2) G-P(sol) polarization free energy of solvation -21.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds