Wall clock time and date at job start Sun Mar 7 2021 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86298 * 109.47278 * 2 1 4 4 C 1.86301 * 109.46970 * 239.99680 * 2 1 3 5 5 C 1.86812 * 109.46831 * 120.00068 * 2 1 3 6 6 C 1.38496 * 120.37953 * 270.02029 * 5 2 1 7 7 C 1.39281 * 118.36062 * 179.97438 * 6 5 2 8 8 N 1.39952 * 120.48868 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00084 * 32.66132 * 8 7 6 10 10 O 1.21286 * 119.99920 * 5.26167 * 9 8 7 11 11 C 1.50699 * 120.00072 * 185.26168 * 9 8 7 12 12 C 1.52999 * 109.47149 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47403 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47383 * 180.02562 * 13 12 11 15 15 C 1.35897 * 116.99875 * 179.97438 * 14 13 12 16 16 C 1.38708 * 120.05837 * 359.72900 * 15 14 13 17 17 C 1.38170 * 119.94355 * 179.71990 * 16 15 14 18 18 C 1.38238 * 120.05576 * 0.57187 * 17 16 15 19 19 C 1.38286 * 120.11255 * 359.67876 * 18 17 16 20 20 C 1.50701 * 119.97664 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47472 * 245.02585 * 20 19 18 22 22 Si 1.86300 * 109.46614 * 5.02319 * 20 19 18 23 23 H 1.48500 * 109.47395 * 60.00069 * 22 20 19 24 24 H 1.48507 * 109.47259 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47692 * 299.99859 * 22 20 19 26 26 C 1.38127 * 120.05650 * 0.04724 * 19 18 17 27 27 C 1.38842 * 119.02219 * 0.02562 * 7 6 5 28 28 N 1.31821 * 120.66500 * 359.97438 * 27 7 6 29 29 C 1.31855 * 121.79713 * 0.02562 * 28 27 7 30 30 H 1.09005 * 109.47308 * 300.00282 * 1 2 3 31 31 H 1.08998 * 109.47045 * 60.00072 * 1 2 3 32 32 H 1.09005 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46865 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47024 * 299.99941 * 3 2 1 35 35 H 1.09005 * 109.47163 * 60.00197 * 3 2 1 36 36 H 1.08992 * 109.47352 * 299.99971 * 4 2 1 37 37 H 1.09003 * 109.47089 * 60.00716 * 4 2 1 38 38 H 1.09011 * 109.46845 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.82161 * 359.95578 * 6 5 2 40 40 H 0.97005 * 120.00206 * 212.65783 * 8 7 6 41 41 H 1.08999 * 109.47010 * 300.00381 * 11 9 8 42 42 H 1.09000 * 109.47010 * 59.99831 * 11 9 8 43 43 H 1.09009 * 109.46832 * 300.00029 * 12 11 9 44 44 H 1.09000 * 109.47406 * 59.99947 * 12 11 9 45 45 H 1.08999 * 109.46532 * 300.00118 * 13 12 11 46 46 H 1.09000 * 109.47233 * 59.99412 * 13 12 11 47 47 H 1.08000 * 120.02772 * 359.97438 * 16 15 14 48 48 H 1.08004 * 119.97163 * 180.27467 * 17 16 15 49 49 H 1.08001 * 119.94789 * 179.69994 * 18 17 16 50 50 H 1.08997 * 109.47081 * 125.01991 * 20 19 18 51 51 H 0.96705 * 113.99933 * 59.99537 * 21 20 19 52 52 H 1.07994 * 120.03304 * 180.02562 * 26 19 18 53 53 H 1.08005 * 119.67214 * 179.97438 * 27 7 6 54 54 H 1.07995 * 119.54233 * 180.27293 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5253 6 6 2.7186 -0.1762 2.6948 7 6 3.1821 -0.8750 3.8069 8 7 3.4318 -0.2076 5.0114 9 6 2.6819 0.8566 5.3603 10 8 1.7312 1.1779 4.6792 11 6 3.0248 1.6472 6.5965 12 6 2.0242 2.7927 6.7632 13 6 2.3727 3.5958 8.0179 14 8 1.4378 4.6652 8.1739 15 6 1.6065 5.4804 9.2480 16 6 2.6468 5.2523 10.1367 17 6 2.8196 6.0860 11.2249 18 6 1.9497 7.1397 11.4349 19 6 0.9087 7.3661 10.5532 20 6 -0.0375 8.5160 10.7847 21 8 -1.3463 8.0094 11.0538 22 14 0.5506 9.5207 12.2392 23 1 1.9106 10.0473 11.9597 24 1 -0.3814 10.6543 12.4671 25 1 0.5915 8.6620 13.4500 26 6 0.7350 6.5390 9.4607 27 6 3.3926 -2.2434 3.7030 28 7 3.1580 -2.8756 2.5703 29 6 2.7191 -2.2433 1.4997 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5741 1.7563 0.0005 34 1 2.1207 2.2702 -0.8900 35 1 2.1207 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3644 -2.4111 38 1 3.5741 -0.8787 -1.5209 39 1 2.5456 0.8888 2.7431 40 1 4.1446 -0.5110 5.5953 41 1 2.9791 0.9954 7.4690 42 1 4.0312 2.0546 6.4997 43 1 2.0696 3.4445 5.8907 44 1 1.0180 2.3850 6.8601 45 1 2.3276 2.9441 8.8905 46 1 3.3789 4.0035 7.9206 47 1 3.3236 4.4262 9.9760 48 1 3.6321 5.9115 11.9147 49 1 2.0835 7.7874 12.2887 50 1 -0.0675 9.1464 9.8960 51 1 -1.3946 7.4387 11.8330 52 1 -0.0779 6.7164 8.7722 53 1 3.7522 -2.7956 4.5587 54 1 2.5348 -2.7981 0.5917 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_4549616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:11:11 Heat of formation + Delta-G solvation = -91.274013 kcal Electronic energy + Delta-G solvation = -31769.821528 eV Core-core repulsion = 27409.140294 eV Total energy + Delta-G solvation = -4360.681234 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 388.178 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.86859 -41.26735 -40.26241 -39.19325 -37.30609 -36.26315 -34.99536 -33.01389 -32.46571 -31.54705 -30.93819 -29.44741 -28.53501 -28.33872 -28.14939 -26.82023 -24.93848 -24.25991 -23.71949 -23.06506 -21.86030 -21.42103 -19.30340 -18.82394 -18.18689 -17.98341 -17.78219 -17.53372 -17.28154 -17.02723 -16.82542 -16.28644 -16.09852 -15.63645 -15.38392 -15.04698 -14.95940 -14.90550 -14.61779 -14.51553 -14.28455 -14.17163 -14.03762 -13.85101 -13.80708 -13.43651 -13.31446 -13.30803 -13.19761 -13.12061 -13.08969 -12.99797 -12.76834 -12.36777 -12.27978 -12.12683 -12.02236 -11.90543 -11.88407 -11.61222 -11.50757 -11.25326 -11.10378 -10.82996 -10.46691 -10.39499 -10.15311 -9.93130 -9.33994 -9.25689 -0.04036 0.20679 0.23639 0.38758 1.15761 1.46491 1.46848 1.53833 1.67528 1.77352 1.91217 1.96987 2.04672 2.28677 2.57873 2.66870 2.87752 3.46747 3.52810 3.64933 3.68726 3.82694 3.84449 3.86727 3.93069 4.05890 4.10224 4.16857 4.20951 4.29694 4.33145 4.38219 4.39512 4.47031 4.55634 4.61538 4.70198 4.76010 4.76783 4.80597 4.81772 4.89478 4.90023 4.98034 4.98322 5.04265 5.08701 5.12979 5.17944 5.27506 5.36261 5.43428 5.52302 5.59599 5.67859 5.72616 5.77095 6.27304 6.42330 6.67705 6.94306 7.01365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.463 4.463 4 C -0.452 4.452 5 C -0.415 4.415 6 C -0.067 4.067 7 C 0.075 3.925 8 N -0.658 5.658 9 C 0.509 3.491 10 O -0.562 6.562 11 C -0.124 4.124 12 C -0.103 4.103 13 C 0.057 3.943 14 O -0.336 6.336 15 C 0.118 3.882 16 C -0.206 4.206 17 C -0.074 4.074 18 C -0.174 4.174 19 C -0.085 4.085 20 C -0.088 4.088 21 O -0.554 6.554 22 Si 0.994 3.006 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.247 1.247 26 C -0.146 4.146 27 C 0.076 3.924 28 N -0.501 5.501 29 C 0.094 3.906 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.432 0.568 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.154 0.846 48 H 0.155 0.845 49 H 0.135 0.865 50 H 0.120 0.880 51 H 0.389 0.611 52 H 0.122 0.878 53 H 0.178 0.822 54 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -0.735 3.280 7.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.561 4.561 5 C -0.455 4.455 6 C -0.095 4.095 7 C -0.022 4.022 8 N -0.305 5.305 9 C 0.299 3.701 10 O -0.439 6.439 11 C -0.163 4.163 12 C -0.141 4.141 13 C -0.018 4.018 14 O -0.251 6.251 15 C 0.072 3.928 16 C -0.224 4.224 17 C -0.092 4.092 18 C -0.192 4.192 19 C -0.085 4.085 20 C -0.197 4.197 21 O -0.361 6.361 22 Si 0.817 3.183 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.171 1.171 26 C -0.165 4.165 27 C -0.084 4.084 28 N -0.210 5.210 29 C -0.063 4.063 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.153 0.847 40 H 0.272 0.728 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.172 0.828 48 H 0.173 0.827 49 H 0.152 0.848 50 H 0.138 0.862 51 H 0.238 0.762 52 H 0.140 0.860 53 H 0.195 0.805 54 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.205 -0.576 2.916 6.880 hybrid contribution 0.004 0.050 0.509 0.511 sum 6.209 -0.526 3.424 7.110 Atomic orbital electron populations 1.26320 1.21953 1.04567 1.04294 0.77179 0.65067 0.64613 0.61677 1.26288 1.06511 1.19634 1.04531 1.26131 1.06660 1.08575 1.14708 1.28948 1.03924 1.00942 1.11721 1.21655 0.95637 1.00958 0.91281 1.19041 1.02510 0.93169 0.87431 1.43429 1.36507 1.30508 1.20082 1.21505 0.81063 0.79984 0.87541 1.90753 1.29335 1.68479 1.55382 1.21553 1.02394 0.96875 0.95505 1.21165 0.99816 0.96179 0.96947 1.22988 0.92453 0.87274 0.99059 1.86051 1.54444 1.41319 1.43270 1.19200 0.95083 0.91056 0.87428 1.21586 0.99953 1.03847 0.97022 1.21259 0.98499 0.92928 0.96543 1.21206 0.96818 1.00583 1.00575 1.20216 0.96717 0.97078 0.94499 1.25199 0.84944 0.98087 1.11518 1.86497 1.26983 1.69982 1.52646 0.85055 0.78956 0.77985 0.76269 1.17882 1.20263 1.17051 1.20351 1.00618 0.95690 0.99862 1.22970 0.98885 0.89489 0.97011 1.67658 1.12263 1.40707 1.00342 1.23044 0.93899 0.92508 0.96851 0.92500 0.90169 0.91081 0.91011 0.90136 0.92168 0.90281 0.90110 0.90770 0.84652 0.72809 0.84827 0.84748 0.91776 0.91985 0.89824 0.89743 0.82801 0.82745 0.84776 0.86228 0.76190 0.85991 0.80532 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.07 8.65 113.37 0.98 0.91 16 2 Si 1.13 -3.39 12.39 68.60 0.85 -2.54 16 3 C -0.46 0.43 8.58 113.37 0.97 1.40 16 4 C -0.45 1.95 8.54 113.37 0.97 2.92 16 5 C -0.42 -1.09 4.59 22.34 0.10 -0.99 16 6 C -0.07 -0.35 8.01 22.58 0.18 -0.17 16 7 C 0.08 0.22 6.31 38.24 0.24 0.46 16 8 N -0.66 2.34 5.35 -303.20 -1.62 0.72 16 9 C 0.51 -0.26 7.59 87.66 0.67 0.41 16 10 O -0.56 -5.22 13.67 -3.05 -0.04 -5.26 16 11 C -0.12 1.12 5.70 29.85 0.17 1.29 16 12 C -0.10 0.24 4.87 30.59 0.15 0.39 16 13 C 0.06 -0.23 4.74 71.98 0.34 0.11 16 14 O -0.34 -1.53 10.14 -92.39 -0.94 -2.46 16 15 C 0.12 0.47 6.69 22.51 0.15 0.62 16 16 C -0.21 0.21 9.04 22.37 0.20 0.41 16 17 C -0.07 0.14 10.04 22.25 0.22 0.37 16 18 C -0.17 0.01 8.67 22.28 0.19 0.20 16 19 C -0.08 -0.20 5.35 -19.88 -0.11 -0.31 16 20 C -0.09 -0.05 2.80 71.24 0.20 0.15 16 21 O -0.55 -1.35 12.83 -148.98 -1.91 -3.26 16 22 Si 0.99 -1.28 25.14 68.60 1.72 0.45 16 23 H -0.25 0.16 7.11 99.48 0.71 0.86 16 24 H -0.28 -0.67 7.11 99.48 0.71 0.04 16 25 H -0.25 0.54 7.04 99.48 0.70 1.24 16 26 C -0.15 -0.79 9.62 22.37 0.22 -0.58 16 27 C 0.08 0.23 11.12 84.84 0.94 1.18 16 28 N -0.50 -3.43 10.35 -195.33 -2.02 -5.45 16 29 C 0.09 0.36 10.46 84.70 0.89 1.25 16 30 H 0.06 0.18 7.96 -2.38 -0.02 0.16 16 31 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 32 H 0.07 0.00 7.96 -2.38 -0.02 -0.02 16 33 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 34 H 0.08 -0.18 7.96 -2.39 -0.02 -0.19 16 35 H 0.06 0.08 7.78 -2.38 -0.02 0.07 16 36 H 0.08 -0.42 7.71 -2.39 -0.02 -0.43 16 37 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 38 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 39 H 0.14 0.86 6.04 -2.91 -0.02 0.85 16 40 H 0.43 -5.09 8.82 -92.70 -0.82 -5.91 16 41 H 0.13 -1.97 8.14 -2.39 -0.02 -1.99 16 42 H 0.13 -1.98 8.14 -2.39 -0.02 -2.00 16 43 H 0.06 0.12 8.10 -2.38 -0.02 0.10 16 44 H 0.06 0.15 8.10 -2.39 -0.02 0.13 16 45 H 0.08 -0.66 7.65 -2.39 -0.02 -0.68 16 46 H 0.08 -0.68 7.68 -2.39 -0.02 -0.70 16 47 H 0.15 -1.05 6.30 -2.91 -0.02 -1.07 16 48 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 49 H 0.13 -0.42 4.86 -2.91 -0.01 -0.44 16 50 H 0.12 -0.03 7.96 -2.39 -0.02 -0.05 16 51 H 0.39 -1.69 8.70 -74.05 -0.64 -2.33 16 52 H 0.12 0.84 8.06 -2.91 -0.02 0.82 16 53 H 0.18 -0.56 8.06 -2.91 -0.02 -0.59 16 54 H 0.18 -0.26 7.46 -2.91 -0.02 -0.28 16 Total: 0.00 -26.31 445.85 3.93 -22.38 By element: Atomic # 1 Polarization: -14.78 SS G_CDS: 0.21 Total: -14.58 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 7.68 Total: 10.01 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -3.65 Total: -4.74 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -2.89 Total: -10.99 kcal Atomic # 14 Polarization: -4.67 SS G_CDS: 2.57 Total: -2.09 kcal Total: -26.31 3.93 -22.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4549616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.892 kcal (2) G-P(sol) polarization free energy of solvation -26.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds