Wall clock time and date at job start Sun Mar 7 2021 12:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86292 * 109.47166 * 2 1 4 4 C 1.86301 * 109.46823 * 240.00339 * 2 1 3 5 5 C 1.86801 * 109.47083 * 120.00276 * 2 1 3 6 6 C 1.38496 * 120.38053 * 270.02010 * 5 2 1 7 7 C 1.39297 * 118.35601 * 179.73154 * 6 5 2 8 8 N 1.39896 * 120.48807 * 180.26651 * 7 6 5 9 9 C 1.34777 * 120.00046 * 32.82292 * 8 7 6 10 10 O 1.21625 * 120.00184 * 5.26732 * 9 8 7 11 11 C 1.47353 * 119.99940 * 185.26798 * 9 8 7 12 12 C 1.36432 * 127.19042 * 179.71288 * 11 9 8 13 13 C 1.50699 * 125.80715 * 359.97438 * 12 11 9 14 14 O 1.42904 * 109.47202 * 90.00097 * 13 12 11 15 15 C 1.35895 * 117.00227 * 180.02562 * 14 13 12 16 16 C 1.38735 * 120.05510 * 359.72149 * 15 14 13 17 17 C 1.38149 * 119.94066 * 179.74477 * 16 15 14 18 18 C 1.38264 * 120.05731 * 0.51439 * 17 16 15 19 19 C 1.50698 * 119.94564 * 179.74613 * 18 17 16 20 20 O 1.42905 * 109.46964 * 245.01929 * 19 18 17 21 21 Si 1.86294 * 109.47001 * 5.01788 * 19 18 17 22 22 H 1.48500 * 109.47419 * 180.02562 * 21 19 18 23 23 H 1.48500 * 109.47589 * 300.00236 * 21 19 18 24 24 H 1.48507 * 109.47128 * 60.00289 * 21 19 18 25 25 C 1.38271 * 120.11051 * 359.76155 * 18 17 16 26 26 C 1.38145 * 120.05520 * 359.97438 * 25 18 17 27 27 O 1.33662 * 108.38953 * 179.83759 * 12 11 9 28 28 C 1.34215 * 110.91009 * 0.44619 * 27 12 11 29 29 C 1.34177 * 109.12634 * 359.72468 * 28 27 12 30 30 C 1.38858 * 119.02229 * 0.48776 * 7 6 5 31 31 N 1.31813 * 120.66214 * 359.50207 * 30 7 6 32 32 C 1.31859 * 121.79546 * 0.25152 * 31 30 7 33 33 H 1.09003 * 109.46698 * 300.00029 * 1 2 3 34 34 H 1.09005 * 109.46867 * 59.99549 * 1 2 3 35 35 H 1.09001 * 109.47428 * 179.97438 * 1 2 3 36 36 H 1.09007 * 109.47533 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47912 * 299.99996 * 3 2 1 38 38 H 1.09003 * 109.47336 * 60.00361 * 3 2 1 39 39 H 1.09006 * 109.47410 * 299.99844 * 4 2 1 40 40 H 1.09000 * 109.47252 * 59.99910 * 4 2 1 41 41 H 1.09002 * 109.47192 * 180.02562 * 4 2 1 42 42 H 1.08001 * 120.82121 * 359.95391 * 6 5 2 43 43 H 0.96995 * 119.99917 * 212.83092 * 8 7 6 44 44 H 1.08995 * 109.47620 * 210.00357 * 13 12 11 45 45 H 1.09004 * 109.46859 * 330.00769 * 13 12 11 46 46 H 1.07997 * 120.02535 * 0.02562 * 16 15 14 47 47 H 1.07997 * 119.96765 * 180.23444 * 17 16 15 48 48 H 1.08998 * 109.47192 * 125.02124 * 19 18 17 49 49 H 0.96700 * 113.99847 * 179.97438 * 20 19 18 50 50 H 1.07997 * 119.96925 * 179.97438 * 25 18 17 51 51 H 1.08005 * 120.02484 * 179.97438 * 26 25 18 52 52 H 1.08002 * 125.43398 * 179.69494 * 28 27 12 53 53 H 1.08001 * 127.01876 * 179.97438 * 29 28 27 54 54 H 1.08005 * 119.66668 * 179.77588 * 30 7 6 55 55 H 1.08002 * 119.53778 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8807 1.5252 6 6 2.7188 -0.1763 2.6946 7 6 3.1774 -0.8761 3.8083 8 7 3.4221 -0.2100 5.0139 9 6 2.6689 0.8521 5.3620 10 8 1.7166 1.1730 4.6768 11 6 2.9991 1.6244 6.5726 12 6 2.3452 2.7200 7.0558 13 6 1.1346 3.3688 6.4357 14 8 -0.0503 2.7737 6.9685 15 6 -1.2386 3.2476 6.5100 16 6 -1.2638 4.2686 5.5710 17 6 -2.4730 4.7450 5.1027 18 6 -3.6576 4.2125 5.5768 19 6 -4.9753 4.7379 5.0684 20 8 -5.6824 5.3668 6.1393 21 14 -4.6678 5.9793 3.7138 22 1 -5.9662 6.4976 3.2132 23 1 -3.8589 7.1044 4.2476 24 1 -3.9330 5.3257 2.6010 25 6 -3.6353 3.1988 6.5169 26 6 -2.4286 2.7152 6.9844 27 8 2.9590 3.1182 8.1744 28 6 4.0095 2.3299 8.4509 29 6 4.1058 1.3793 7.5089 30 6 3.3925 -2.2439 3.7028 31 7 3.1579 -2.8759 2.5701 32 6 2.7188 -2.2433 1.4997 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3634 -1.0276 -0.0005 36 1 3.5741 1.7564 0.0005 37 1 2.1208 2.2703 -0.8899 38 1 2.1208 2.2702 0.8900 39 1 2.1206 -1.9059 -1.5213 40 1 2.1206 -0.3643 -2.4112 41 1 3.5740 -0.8786 -1.5210 42 1 2.5457 0.8887 2.7430 43 1 4.1339 -0.5125 5.5992 44 1 1.1384 4.4353 6.6610 45 1 1.1589 3.2256 5.3554 46 1 -0.3388 4.6874 5.2032 47 1 -2.4930 5.5371 4.3689 48 1 -5.5690 3.9121 4.6766 49 1 -6.5416 5.7296 5.8838 50 1 -4.5619 2.7847 6.8860 51 1 -2.4117 1.9236 7.7190 52 1 4.6718 2.4430 9.2965 53 1 4.8457 0.5947 7.4501 54 1 3.7515 -2.7962 4.5587 55 1 2.5383 -2.7975 0.5904 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_4549634.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:12:11 Heat of formation + Delta-G solvation = -54.022358 kcal Electronic energy + Delta-G solvation = -38471.586369 eV Core-core repulsion = 33564.697493 eV Total energy + Delta-G solvation = -4906.888876 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 426.162 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.81648 -41.79392 -41.32475 -40.13442 -39.17404 -37.26142 -36.32358 -34.31859 -33.01515 -32.93976 -32.04840 -31.52421 -31.09347 -29.43850 -28.42626 -28.32105 -27.96580 -26.19787 -25.51059 -24.57481 -23.92143 -23.58628 -22.33152 -22.02793 -21.17011 -19.56742 -19.44089 -18.49264 -18.44316 -17.86598 -17.81551 -17.35100 -17.20029 -16.95712 -16.84021 -16.65590 -16.11847 -15.84634 -15.72665 -15.66531 -15.04578 -14.90456 -14.84301 -14.52351 -14.47489 -14.39453 -14.18787 -14.05250 -13.93993 -13.85380 -13.84447 -13.79797 -13.55125 -13.38847 -13.18737 -13.13032 -13.11428 -12.98986 -12.50355 -12.29222 -12.13439 -12.09653 -11.93219 -11.84317 -11.71067 -11.35283 -11.17342 -11.05231 -10.82471 -10.40840 -10.29763 -10.18060 -10.09753 -9.94854 -9.37459 -9.27384 -0.31220 0.05842 0.21284 0.25154 0.27230 0.97214 1.16578 1.40724 1.44889 1.50133 1.67180 1.80915 1.89902 1.93299 1.98157 2.06213 2.37912 2.57709 2.58224 2.86531 3.26137 3.40063 3.48990 3.58499 3.63047 3.65403 3.79800 3.81927 3.86189 3.97348 4.03660 4.10801 4.23118 4.25285 4.31289 4.37268 4.38981 4.44709 4.55867 4.64420 4.73452 4.77277 4.78088 4.81872 4.83116 4.89797 4.89940 4.90389 5.01658 5.04690 5.10360 5.10722 5.18589 5.20929 5.44388 5.53284 5.60924 5.63601 5.68072 5.73063 5.80488 6.15953 6.19969 6.82037 6.83947 6.94451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.452 4.452 5 C -0.414 4.414 6 C -0.063 4.063 7 C 0.075 3.925 8 N -0.647 5.647 9 C 0.587 3.413 10 O -0.545 6.545 11 C -0.225 4.225 12 C 0.051 3.949 13 C 0.131 3.869 14 O -0.320 6.320 15 C 0.124 3.876 16 C -0.205 4.205 17 C -0.092 4.092 18 C -0.125 4.125 19 C -0.077 4.077 20 O -0.563 6.563 21 Si 0.973 3.027 22 H -0.252 1.252 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.055 4.055 26 C -0.161 4.161 27 O -0.175 6.175 28 C -0.008 4.008 29 C -0.196 4.196 30 C 0.079 3.921 31 N -0.498 5.498 32 C 0.097 3.903 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.428 0.572 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.147 0.853 47 H 0.134 0.866 48 H 0.095 0.905 49 H 0.398 0.602 50 H 0.148 0.852 51 H 0.137 0.863 52 H 0.254 0.746 53 H 0.194 0.806 54 H 0.176 0.824 55 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 1.372 -0.684 3.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.313 2.687 3 C -0.569 4.569 4 C -0.561 4.561 5 C -0.454 4.454 6 C -0.091 4.091 7 C -0.021 4.021 8 N -0.294 5.294 9 C 0.378 3.622 10 O -0.424 6.424 11 C -0.230 4.230 12 C -0.002 4.002 13 C 0.057 3.943 14 O -0.235 6.235 15 C 0.079 3.921 16 C -0.224 4.224 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.187 4.187 20 O -0.372 6.372 21 Si 0.798 3.202 22 H -0.176 1.176 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.073 4.073 26 C -0.180 4.180 27 O -0.070 6.070 28 C -0.074 4.074 29 C -0.215 4.215 30 C -0.080 4.080 31 N -0.206 5.206 32 C -0.060 4.060 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.155 0.845 43 H 0.268 0.732 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.165 0.835 47 H 0.152 0.848 48 H 0.112 0.888 49 H 0.248 0.752 50 H 0.165 0.835 51 H 0.155 0.845 52 H 0.270 0.730 53 H 0.212 0.788 54 H 0.193 0.807 55 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.169 1.215 -1.088 3.564 hybrid contribution -0.052 0.479 0.756 0.897 sum 3.117 1.693 -0.332 3.563 Atomic orbital electron populations 1.26306 1.21807 1.04590 1.04329 0.77210 0.65166 0.64733 0.61543 1.26272 1.06496 1.19502 1.04627 1.26133 1.06656 1.08587 1.14715 1.28994 1.03832 1.00939 1.11651 1.21658 0.95368 1.01006 0.91084 1.18998 1.03131 0.93223 0.86753 1.43033 1.36020 1.30038 1.20268 1.17523 0.81169 0.79792 0.83755 1.90796 1.28592 1.68606 1.54400 1.21137 1.02381 0.99530 0.99961 1.22019 0.95457 0.95692 0.87072 1.21193 0.77842 0.97150 0.98154 1.86047 1.12325 1.60799 1.64324 1.19130 0.85140 0.93680 0.94180 1.21349 0.99974 1.00023 1.01045 1.21006 0.91863 0.98861 0.99273 1.19498 0.93955 0.98684 1.00354 1.24695 0.92828 1.03479 0.97699 1.86467 1.37089 1.77621 1.35996 0.85372 0.80678 0.78049 0.76132 1.17626 1.19335 1.18341 1.21004 0.97515 0.94550 0.94186 1.20676 0.89864 1.03457 1.03996 1.83820 1.36973 1.50253 1.35977 1.24946 0.89680 0.90619 1.02141 1.23275 1.00010 1.03569 0.94599 1.22924 0.98770 0.89258 0.97091 1.67679 1.12258 1.40478 1.00221 1.23087 0.93590 0.92517 0.96826 0.92464 0.90096 0.91103 0.91050 0.90040 0.92026 0.90284 0.90077 0.90789 0.84466 0.73226 0.88157 0.87210 0.83503 0.84807 0.88758 0.75206 0.83468 0.84491 0.73028 0.78844 0.80699 0.80590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.14 8.65 113.37 0.98 1.12 16 2 Si 1.13 -3.72 12.39 68.60 0.85 -2.87 16 3 C -0.46 0.71 8.58 113.37 0.97 1.69 16 4 C -0.45 2.07 8.54 113.37 0.97 3.04 16 5 C -0.41 -1.13 4.59 22.34 0.10 -1.02 16 6 C -0.06 -0.37 8.00 22.59 0.18 -0.19 16 7 C 0.08 0.36 6.31 38.26 0.24 0.61 16 8 N -0.65 -0.72 5.35 -306.18 -1.64 -2.36 16 9 C 0.59 3.41 7.58 86.64 0.66 4.07 16 10 O -0.55 -6.37 12.55 -4.11 -0.05 -6.42 16 11 C -0.23 -0.65 6.31 -19.00 -0.12 -0.77 16 12 C 0.05 0.23 7.00 25.26 0.18 0.41 16 13 C 0.13 0.64 4.74 71.24 0.34 0.98 16 14 O -0.32 -3.13 10.12 -92.37 -0.93 -4.06 16 15 C 0.12 1.10 6.69 22.51 0.15 1.25 16 16 C -0.21 -1.27 9.04 22.37 0.20 -1.07 16 17 C -0.09 -0.52 8.66 22.25 0.19 -0.33 16 18 C -0.12 -0.69 5.38 -19.85 -0.11 -0.80 16 19 C -0.08 -0.04 2.79 71.24 0.20 0.16 16 20 O -0.56 -0.64 12.81 -148.98 -1.91 -2.55 16 21 Si 0.97 -0.08 25.13 68.60 1.72 1.65 16 22 H -0.25 0.23 7.11 99.48 0.71 0.94 16 23 H -0.27 -0.84 7.04 99.48 0.70 -0.14 16 24 H -0.26 -0.37 7.11 99.48 0.71 0.33 16 25 C -0.05 -0.32 9.68 22.26 0.22 -0.10 16 26 C -0.16 -1.27 9.99 22.37 0.22 -1.04 16 27 O -0.17 -0.34 10.52 4.37 0.05 -0.30 16 28 C -0.01 0.04 12.03 66.89 0.80 0.85 16 29 C -0.20 0.89 10.60 23.65 0.25 1.14 16 30 C 0.08 0.35 11.12 84.84 0.94 1.29 16 31 N -0.50 -3.63 10.35 -195.31 -2.02 -5.66 16 32 C 0.10 0.38 10.45 84.70 0.89 1.27 16 33 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 34 H 0.08 -0.17 7.96 -2.38 -0.02 -0.18 16 35 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 36 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 37 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 38 H 0.06 0.03 7.78 -2.39 -0.02 0.01 16 39 H 0.08 -0.43 7.71 -2.38 -0.02 -0.45 16 40 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 41 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.14 0.91 6.05 -2.91 -0.02 0.89 16 43 H 0.43 -2.59 8.01 -92.71 -0.74 -3.33 16 44 H 0.10 0.05 7.65 -2.39 -0.02 0.04 16 45 H 0.11 0.58 6.02 -2.38 -0.01 0.57 16 46 H 0.15 0.25 6.30 -2.91 -0.02 0.23 16 47 H 0.13 0.32 4.86 -2.91 -0.01 0.31 16 48 H 0.09 -0.33 7.96 -2.39 -0.02 -0.35 16 49 H 0.40 -3.23 8.74 -74.06 -0.65 -3.88 16 50 H 0.15 0.32 8.06 -2.91 -0.02 0.30 16 51 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 52 H 0.25 -3.59 8.06 -2.91 -0.02 -3.61 16 53 H 0.19 -2.30 7.75 -2.91 -0.02 -2.32 16 54 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 55 H 0.18 -0.29 7.45 -2.91 -0.02 -0.31 16 Total: 0.00 -26.43 461.46 4.84 -21.59 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: 0.31 Total: -11.54 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 8.46 Total: 12.53 kcal Atomic # 7 Polarization: -4.35 SS G_CDS: -3.66 Total: -8.01 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -2.85 Total: -13.34 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.57 Total: -1.23 kcal Total: -26.43 4.84 -21.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4549634.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.434 kcal (2) G-P(sol) polarization free energy of solvation -26.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds