Wall clock time and date at job start Sun Mar 7 2021 12:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.47128 * 2 1 4 4 C 1.86296 * 109.47230 * 239.99861 * 2 1 3 5 5 C 1.86799 * 109.46918 * 119.99795 * 2 1 3 6 6 C 1.38510 * 120.38606 * 270.27247 * 5 2 1 7 7 C 1.39281 * 118.35932 * 180.26613 * 6 5 2 8 8 N 1.39948 * 120.48551 * 179.76415 * 7 6 5 9 9 C 1.34781 * 120.00201 * 327.16397 * 8 7 6 10 10 O 1.21291 * 119.99571 * 354.73516 * 9 8 7 11 11 C 1.50698 * 120.00457 * 174.73943 * 9 8 7 12 12 O 1.42898 * 109.47162 * 179.97438 * 11 9 8 13 13 C 1.35901 * 116.99536 * 179.97438 * 12 11 9 14 14 C 1.38704 * 120.05784 * 359.71881 * 13 12 11 15 15 C 1.38174 * 119.94279 * 179.74964 * 14 13 12 16 16 C 1.38245 * 120.05121 * 0.52671 * 15 14 13 17 17 C 1.50712 * 119.94047 * 179.72235 * 16 15 14 18 18 O 1.42888 * 109.47154 * 245.02561 * 17 16 15 19 19 Si 1.86302 * 109.46928 * 5.02863 * 17 16 15 20 20 H 1.48495 * 109.47245 * 59.99661 * 19 17 16 21 21 H 1.48501 * 109.46728 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46849 * 299.99467 * 19 17 16 23 23 C 1.38281 * 120.11680 * 359.75115 * 16 15 14 24 24 C 1.38123 * 120.05391 * 359.97252 * 23 16 15 25 25 N 1.48002 * 120.02754 * 180.02562 * 24 23 16 26 26 O 1.21797 * 120.00363 * 359.97438 * 25 24 23 27 27 O 1.21811 * 120.00007 * 179.97438 * 25 24 23 28 28 C 1.38843 * 119.02516 * 359.48838 * 7 6 5 29 29 N 1.31819 * 120.66360 * 0.25166 * 28 7 6 30 30 C 1.31850 * 121.79924 * 359.97438 * 29 28 7 31 31 H 1.09009 * 109.46955 * 300.00009 * 1 2 3 32 32 H 1.08998 * 109.46858 * 59.99779 * 1 2 3 33 33 H 1.08994 * 109.47143 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47216 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47291 * 300.00371 * 3 2 1 36 36 H 1.09002 * 109.47417 * 59.99819 * 3 2 1 37 37 H 1.09004 * 109.47108 * 300.00711 * 4 2 1 38 38 H 1.09011 * 109.46792 * 60.00035 * 4 2 1 39 39 H 1.08998 * 109.47314 * 179.97438 * 4 2 1 40 40 H 1.08000 * 120.81536 * 0.02562 * 6 5 2 41 41 H 0.96995 * 120.00392 * 147.43292 * 8 7 6 42 42 H 1.09006 * 109.46788 * 299.99520 * 11 9 8 43 43 H 1.08997 * 109.47039 * 59.99441 * 11 9 8 44 44 H 1.07994 * 120.03420 * 0.02737 * 14 13 12 45 45 H 1.07997 * 119.97352 * 180.27733 * 15 14 13 46 46 H 1.09000 * 109.46466 * 125.02307 * 17 16 15 47 47 H 0.96702 * 114.00300 * 60.00074 * 18 17 16 48 48 H 1.07997 * 119.97423 * 179.97438 * 23 16 15 49 49 H 1.07998 * 119.66543 * 180.23404 * 28 7 6 50 50 H 1.07999 * 119.54515 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7138 -0.1770 2.6963 7 6 3.1833 -0.8747 3.8066 8 7 3.4336 -0.2073 5.0109 9 6 3.8696 1.0680 4.9967 10 8 4.1363 1.6059 3.9428 11 6 4.0259 1.8254 6.2900 12 8 4.4985 3.1456 6.0148 13 6 4.6936 3.9658 7.0807 14 6 4.4300 3.5113 8.3644 15 6 4.6341 4.3454 9.4469 16 6 5.0902 5.6355 9.2503 17 6 5.3060 6.5453 10.4324 18 8 4.3915 7.6410 10.3633 19 14 5.0183 5.5945 12.0084 20 1 5.9687 4.4558 12.0801 21 1 5.2315 6.4908 13.1731 22 1 3.6258 5.0791 12.0283 23 6 5.3483 6.0930 7.9711 24 6 5.1513 5.2612 6.8862 25 7 5.4282 5.7511 5.5174 26 8 5.8295 6.8884 5.3471 27 8 5.2547 5.0170 4.5610 28 6 3.3939 -2.2432 3.7026 29 7 3.1588 -2.8754 2.5701 30 6 2.7184 -2.2434 1.5000 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.5740 1.7565 0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1207 2.2703 0.8900 37 1 2.1206 -1.9059 -1.5211 38 1 2.1207 -0.3643 -2.4111 39 1 3.5740 -0.8778 -1.5213 40 1 2.5358 0.8871 2.7461 41 1 3.2971 -0.6637 5.8558 42 1 3.0623 1.8823 6.7964 43 1 4.7423 1.3093 6.9291 44 1 4.0698 2.5048 8.5181 45 1 4.4333 3.9905 10.4469 46 1 6.3282 6.9236 10.4177 47 1 3.4610 7.3779 10.3719 48 1 5.7042 7.1014 7.8203 49 1 3.7541 -2.7951 4.5581 50 1 2.5383 -2.7975 0.5906 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:16:40 Heat of formation + Delta-G solvation = -70.255440 kcal Electronic energy + Delta-G solvation = -35424.195511 eV Core-core repulsion = 30544.484513 eV Total energy + Delta-G solvation = -4879.710998 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 405.141 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.31286 -42.09014 -41.50087 -40.32200 -39.40616 -37.60384 -37.39537 -36.28436 -33.55297 -33.07749 -32.32745 -31.62799 -29.53171 -29.40679 -28.35714 -28.30107 -27.84321 -26.60141 -24.96102 -24.38125 -23.69821 -22.81798 -21.76541 -20.56153 -19.79937 -19.46305 -19.04793 -18.65682 -18.30333 -18.13552 -17.79726 -17.68906 -17.28678 -16.83408 -16.36708 -16.14685 -15.83580 -15.68309 -15.50823 -15.18773 -14.90601 -14.88435 -14.27678 -14.13003 -14.04629 -13.99868 -13.88148 -13.78891 -13.77239 -13.35632 -13.26702 -13.19510 -13.13058 -12.98867 -12.71521 -12.45316 -12.32502 -12.28487 -12.21860 -12.09474 -12.07681 -11.90444 -11.73111 -11.27713 -11.13062 -10.86520 -10.82776 -10.52975 -10.40412 -10.15153 -9.84023 -9.37458 -1.33980 -0.27407 -0.05594 0.12893 0.22329 0.32636 1.04810 1.14538 1.31287 1.46823 1.54212 1.69277 1.94285 1.98172 2.00502 2.06268 2.15837 2.58405 2.87640 3.09016 3.13130 3.36667 3.42338 3.54607 3.65861 3.66740 3.75930 3.83644 3.84350 3.91383 4.13791 4.24655 4.28571 4.35681 4.37272 4.54745 4.60595 4.74465 4.77831 4.79296 4.83461 4.85824 4.88158 4.89939 5.02319 5.04314 5.05803 5.13452 5.16882 5.54015 5.62742 5.66248 5.67707 5.76156 6.18608 6.40688 6.67772 6.88373 6.96672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.130 2.870 3 C -0.470 4.470 4 C -0.455 4.455 5 C -0.414 4.414 6 C -0.067 4.067 7 C 0.076 3.924 8 N -0.646 5.646 9 C 0.507 3.493 10 O -0.537 6.537 11 C 0.029 3.971 12 O -0.291 6.291 13 C 0.194 3.806 14 C -0.189 4.189 15 C -0.018 4.018 16 C -0.149 4.149 17 C -0.087 4.087 18 O -0.554 6.554 19 Si 0.985 3.015 20 H -0.241 1.241 21 H -0.280 1.280 22 H -0.230 1.230 23 C 0.002 3.998 24 C -0.102 4.102 25 N 0.034 4.966 26 O -0.199 6.199 27 O -0.174 6.174 28 C 0.083 3.917 29 N -0.499 5.499 30 C 0.098 3.902 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.436 0.564 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.205 0.795 45 H 0.177 0.823 46 H 0.125 0.875 47 H 0.392 0.608 48 H 0.156 0.844 49 H 0.183 0.817 50 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -6.427 10.996 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.317 2.683 3 C -0.575 4.575 4 C -0.563 4.563 5 C -0.455 4.455 6 C -0.095 4.095 7 C -0.020 4.020 8 N -0.296 5.296 9 C 0.294 3.706 10 O -0.412 6.412 11 C -0.048 4.048 12 O -0.201 6.201 13 C 0.144 3.856 14 C -0.207 4.207 15 C -0.036 4.036 16 C -0.150 4.150 17 C -0.195 4.195 18 O -0.362 6.362 19 Si 0.806 3.194 20 H -0.165 1.165 21 H -0.206 1.206 22 H -0.153 1.153 23 C -0.018 4.018 24 C -0.187 4.187 25 N 0.545 4.455 26 O -0.407 6.407 27 O -0.388 6.388 28 C -0.076 4.076 29 N -0.208 5.208 30 C -0.059 4.059 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.149 0.851 41 H 0.277 0.723 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.222 0.778 45 H 0.194 0.806 46 H 0.143 0.857 47 H 0.241 0.759 48 H 0.174 0.826 49 H 0.200 0.800 50 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.163 -7.213 11.468 14.173 hybrid contribution -0.054 1.262 -0.587 1.393 sum -4.216 -5.951 10.881 13.099 Atomic orbital electron populations 1.26165 1.20243 1.05052 1.04688 0.77143 0.65977 0.63431 0.61758 1.26440 1.05871 1.20999 1.04218 1.26165 1.06330 1.08858 1.14992 1.28883 1.04396 1.00765 1.11456 1.21645 0.94306 1.00803 0.92778 1.18933 1.01082 0.93638 0.88379 1.43009 1.65745 1.12430 1.08451 1.20754 0.76406 0.82014 0.91407 1.90876 1.47761 1.68310 1.34209 1.23057 1.05795 0.80854 0.95112 1.86452 1.79219 1.24271 1.30149 1.18894 0.90817 0.87057 0.88823 1.21769 1.06616 1.04602 0.87728 1.21744 0.89447 0.91298 1.01094 1.20470 1.03844 0.96625 0.94104 1.25282 0.98258 0.93083 1.02927 1.86554 1.20564 1.32171 1.96892 0.85212 0.82344 0.77942 0.73891 1.16469 1.20606 1.15253 1.20890 0.91751 0.99491 0.89620 1.20883 1.20243 0.95856 0.81765 1.43883 0.97494 1.00122 1.04035 1.94509 1.48827 1.04946 1.92417 1.94678 1.56293 1.54166 1.33658 1.23004 0.97475 0.90092 0.97074 1.67682 1.12220 1.40686 1.00216 1.23049 0.93824 0.92218 0.96759 0.91701 0.90227 0.90408 0.92455 0.90360 0.92401 0.89815 0.90168 0.91461 0.85051 0.72285 0.83204 0.83279 0.77797 0.80599 0.85698 0.75877 0.82620 0.80020 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.09 8.65 113.37 0.98 2.07 16 2 Si 1.13 -2.62 12.38 68.60 0.85 -1.77 16 3 C -0.47 -1.64 8.59 113.37 0.97 -0.67 16 4 C -0.46 1.30 8.54 113.37 0.97 2.26 16 5 C -0.41 -1.02 4.59 22.34 0.10 -0.92 16 6 C -0.07 -0.34 8.01 22.59 0.18 -0.16 16 7 C 0.08 0.11 6.31 38.24 0.24 0.36 16 8 N -0.65 3.73 5.35 -303.19 -1.62 2.10 16 9 C 0.51 -0.23 7.67 87.66 0.67 0.44 16 10 O -0.54 -6.56 14.20 15.97 0.23 -6.34 16 11 C 0.03 -0.27 5.22 71.24 0.37 0.10 16 12 O -0.29 -0.73 7.68 -63.41 -0.49 -1.22 16 13 C 0.19 -0.15 6.67 22.51 0.15 0.00 16 14 C -0.19 2.16 9.04 22.37 0.20 2.36 16 15 C -0.02 0.21 8.66 22.26 0.19 0.40 16 16 C -0.15 0.97 5.35 -19.85 -0.11 0.86 16 17 C -0.09 0.67 2.80 71.24 0.20 0.87 16 18 O -0.55 2.52 12.83 -148.98 -1.91 0.61 16 19 Si 0.99 -10.03 25.13 68.60 1.72 -8.31 16 20 H -0.24 2.60 7.11 99.48 0.71 3.31 16 21 H -0.28 1.12 7.11 99.48 0.71 1.83 16 22 H -0.23 2.98 7.04 99.48 0.70 3.68 16 23 C 0.00 0.00 9.19 22.25 0.20 0.21 16 24 C -0.10 -0.57 6.87 36.48 0.25 -0.32 16 25 N 0.03 0.52 4.45 -46.24 -0.21 0.32 16 26 O -0.20 -3.44 18.45 18.89 0.35 -3.09 16 27 O -0.17 -3.53 17.24 25.59 0.44 -3.08 16 28 C 0.08 0.09 11.12 84.84 0.94 1.03 16 29 N -0.50 -2.69 10.35 -195.33 -2.02 -4.71 16 30 C 0.10 0.29 10.46 84.70 0.89 1.18 16 31 H 0.06 -0.08 7.96 -2.38 -0.02 -0.10 16 32 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 33 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.06 0.37 7.96 -2.39 -0.02 0.35 16 35 H 0.08 0.13 7.96 -2.39 -0.02 0.11 16 36 H 0.06 0.33 7.78 -2.39 -0.02 0.31 16 37 H 0.08 -0.42 7.71 -2.39 -0.02 -0.43 16 38 H 0.08 -0.28 7.96 -2.38 -0.02 -0.30 16 39 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 40 H 0.13 0.98 6.07 -2.91 -0.02 0.96 16 41 H 0.44 -6.90 8.82 -92.71 -0.82 -7.72 16 42 H 0.15 -2.74 7.65 -2.38 -0.02 -2.76 16 43 H 0.15 -2.73 7.68 -2.39 -0.02 -2.75 16 44 H 0.21 -4.41 6.30 -2.91 -0.02 -4.43 16 45 H 0.18 -3.14 4.86 -2.91 -0.01 -3.15 16 46 H 0.13 -1.01 7.96 -2.39 -0.02 -1.03 16 47 H 0.39 -4.63 8.70 -74.06 -0.64 -5.27 16 48 H 0.16 0.27 7.61 -2.91 -0.02 0.25 16 49 H 0.18 -1.08 8.06 -2.91 -0.02 -1.10 16 50 H 0.18 -0.40 7.45 -2.91 -0.02 -0.42 16 Total: 0.00 -39.80 429.46 5.06 -34.73 By element: Atomic # 1 Polarization: -19.63 SS G_CDS: 0.31 Total: -19.32 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.41 Total: 10.07 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -3.85 Total: -2.29 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.38 Total: -13.12 kcal Atomic # 14 Polarization: -12.65 SS G_CDS: 2.57 Total: -10.08 kcal Total: -39.80 5.06 -34.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.523 kcal (2) G-P(sol) polarization free energy of solvation -39.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds