Wall clock time and date at job start Sun Mar 7 2021 12:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86302 * 109.47387 * 2 1 4 4 C 1.86304 * 109.47213 * 240.00173 * 2 1 3 5 5 C 1.86799 * 109.47232 * 119.99927 * 2 1 3 6 6 C 1.38506 * 120.38286 * 89.99679 * 5 2 1 7 7 C 1.39272 * 118.36449 * 179.97438 * 6 5 2 8 8 N 1.39955 * 120.49257 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99575 * 327.33846 * 8 7 6 10 10 O 1.21290 * 120.00338 * 354.73521 * 9 8 7 11 11 C 1.50697 * 120.00061 * 174.73332 * 9 8 7 12 12 O 1.42898 * 109.47249 * 180.02562 * 11 9 8 13 13 C 1.35905 * 116.99917 * 180.02562 * 12 11 9 14 14 C 1.38707 * 120.05523 * 359.72609 * 13 12 11 15 15 C 1.38166 * 119.94120 * 179.72475 * 14 13 12 16 16 C 1.38247 * 120.05658 * 0.56890 * 15 14 13 17 17 C 1.38283 * 120.10875 * 359.68195 * 16 15 14 18 18 C 1.50700 * 119.97026 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47530 * 245.02331 * 18 17 16 20 20 Si 1.86298 * 109.47249 * 5.02636 * 18 17 16 21 21 H 1.48501 * 109.47356 * 299.99882 * 20 18 17 22 22 H 1.48500 * 109.47289 * 59.99465 * 20 18 17 23 23 H 1.48501 * 109.47470 * 179.97438 * 20 18 17 24 24 C 1.38124 * 120.05599 * 0.04732 * 17 16 15 25 25 C 1.38844 * 119.02442 * 0.27373 * 7 6 5 26 26 N 1.31826 * 120.66298 * 359.41158 * 25 7 6 27 27 C 1.31862 * 121.79057 * 0.62778 * 26 25 7 28 28 H 1.09000 * 109.47205 * 300.00063 * 1 2 3 29 29 H 1.09009 * 109.47013 * 59.99724 * 1 2 3 30 30 H 1.08996 * 109.47560 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47546 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47231 * 300.00199 * 3 2 1 33 33 H 1.09000 * 109.46999 * 59.99811 * 3 2 1 34 34 H 1.09000 * 109.46567 * 300.00039 * 4 2 1 35 35 H 1.08999 * 109.47001 * 60.00049 * 4 2 1 36 36 H 1.09000 * 109.46881 * 180.02562 * 4 2 1 37 37 H 1.08008 * 120.81483 * 0.02562 * 6 5 2 38 38 H 0.96997 * 120.00416 * 147.33783 * 8 7 6 39 39 H 1.09007 * 109.47425 * 300.00055 * 11 9 8 40 40 H 1.09002 * 109.47349 * 59.99658 * 11 9 8 41 41 H 1.08003 * 120.02927 * 359.97438 * 14 13 12 42 42 H 1.08004 * 119.97478 * 180.27817 * 15 14 13 43 43 H 1.08005 * 119.94334 * 179.70442 * 16 15 14 44 44 H 1.08999 * 109.46876 * 125.02156 * 18 17 16 45 45 H 0.96703 * 114.00160 * 180.02562 * 19 18 17 46 46 H 1.07999 * 120.02455 * 180.02562 * 24 17 16 47 47 H 1.08001 * 119.67134 * 179.70682 * 25 7 6 48 48 H 1.07994 * 119.53550 * 179.67705 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7191 -2.2456 1.4998 7 6 3.1836 -2.8591 2.6606 8 7 3.4348 -4.2357 2.6845 9 6 2.6854 -5.0705 1.9374 10 8 1.7339 -4.6422 1.3192 11 6 3.0298 -6.5360 1.8702 12 8 2.0963 -7.2063 1.0209 13 6 2.2662 -8.5440 0.8518 14 6 3.3130 -9.1970 1.4856 15 6 3.4801 -10.5580 1.3166 16 6 2.6121 -11.2670 0.5073 17 6 1.5707 -10.6174 -0.1298 18 6 0.6260 -11.3934 -1.0109 19 8 0.7601 -10.9478 -2.3620 20 14 1.0341 -13.2084 -0.9122 21 1 2.4299 -13.4276 -1.3693 22 1 0.8947 -13.6715 0.4918 23 1 0.1028 -13.9732 -1.7799 24 6 1.3961 -9.2578 0.0403 25 6 3.3889 -2.0859 3.7954 26 7 3.1597 -0.7878 3.7749 27 6 2.7193 -0.1771 2.6924 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1206 -1.9058 -1.5211 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8786 -1.5209 37 1 2.5460 -2.8199 0.6016 38 1 4.1482 -4.5890 3.2387 39 1 4.0362 -6.6548 1.4685 40 1 2.9850 -6.9661 2.8708 41 1 3.9945 -8.6426 2.1139 42 1 4.2924 -11.0678 1.8135 43 1 2.7472 -12.3301 0.3726 44 1 -0.3985 -11.2326 -0.6753 45 1 0.1800 -11.4048 -2.9863 46 1 0.5824 -8.7511 -0.4571 47 1 3.7443 -2.5517 4.7026 48 1 2.5389 0.8873 2.7178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915418_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:17:29 Heat of formation + Delta-G solvation = -75.147843 kcal Electronic energy + Delta-G solvation = -28579.046472 eV Core-core repulsion = 24530.139759 eV Total energy + Delta-G solvation = -4048.906713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.00112 -41.25268 -40.14385 -38.90464 -37.33102 -36.21652 -33.05926 -32.63190 -32.07830 -31.13185 -29.51898 -29.14018 -28.40626 -28.37844 -26.82473 -24.81716 -24.07590 -23.71146 -22.42436 -21.55001 -19.30311 -19.13653 -18.52098 -18.06237 -17.83391 -17.63739 -17.35899 -17.09711 -16.72508 -15.93443 -15.71650 -15.56811 -15.22395 -14.92622 -14.80516 -14.75003 -14.48761 -14.22823 -14.08734 -13.93175 -13.87746 -13.80301 -13.67250 -13.40429 -13.35636 -13.24556 -13.21993 -13.05492 -12.56077 -12.26956 -12.15770 -12.01015 -11.97301 -11.87762 -11.69866 -11.25175 -11.09573 -10.91432 -10.43019 -10.35627 -10.11442 -9.92244 -9.36261 -9.29613 -0.02251 0.17443 0.30465 0.38015 1.06896 1.23582 1.30828 1.40913 1.46882 1.62434 1.84790 1.86600 1.95978 2.37832 2.52555 2.60785 2.91522 3.23282 3.36031 3.61553 3.63736 3.74595 3.76068 3.83221 3.87500 3.98826 4.15789 4.17482 4.20476 4.28253 4.34982 4.48055 4.58016 4.71016 4.71799 4.75774 4.76178 4.80262 4.81777 4.94498 5.04313 5.05387 5.17682 5.18840 5.31723 5.42907 5.45857 5.55410 5.58899 5.59632 5.77295 5.99998 6.26318 6.54462 6.79406 7.01841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.070 2.930 3 C -0.449 4.449 4 C -0.451 4.451 5 C -0.407 4.407 6 C -0.046 4.046 7 C 0.082 3.918 8 N -0.666 5.666 9 C 0.515 3.485 10 O -0.491 6.491 11 C 0.043 3.957 12 O -0.288 6.288 13 C 0.128 3.872 14 C -0.206 4.206 15 C -0.072 4.072 16 C -0.158 4.158 17 C -0.035 4.035 18 C -0.085 4.085 19 O -0.543 6.543 20 Si 0.951 3.049 21 H -0.247 1.247 22 H -0.249 1.249 23 H -0.256 1.256 24 C -0.115 4.115 25 C 0.088 3.912 26 N -0.473 5.473 27 C 0.111 3.889 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.415 0.585 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.382 0.618 46 H 0.137 0.863 47 H 0.156 0.844 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -2.524 0.706 3.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.261 2.739 3 C -0.557 4.557 4 C -0.559 4.559 5 C -0.449 4.449 6 C -0.074 4.074 7 C -0.014 4.014 8 N -0.314 5.314 9 C 0.301 3.699 10 O -0.363 6.363 11 C -0.036 4.036 12 O -0.201 6.201 13 C 0.083 3.917 14 C -0.225 4.225 15 C -0.090 4.090 16 C -0.176 4.176 17 C -0.035 4.035 18 C -0.195 4.195 19 O -0.349 6.349 20 Si 0.773 3.227 21 H -0.171 1.171 22 H -0.173 1.173 23 H -0.181 1.181 24 C -0.134 4.134 25 C -0.071 4.071 26 N -0.181 5.181 27 C -0.046 4.046 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.251 0.749 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.141 0.859 44 H 0.097 0.903 45 H 0.229 0.771 46 H 0.155 0.845 47 H 0.173 0.827 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.420 -2.192 1.287 3.510 hybrid contribution 0.028 -0.811 -0.317 0.871 sum 2.448 -3.003 0.970 3.994 Atomic orbital electron populations 1.26119 1.20226 1.04842 1.04577 0.78034 0.67039 0.65873 0.62994 1.26122 1.06496 1.18243 1.04850 1.26137 1.06316 1.08313 1.15116 1.28459 1.04653 0.99301 1.12492 1.21541 0.94473 0.94435 0.96912 1.18851 1.03378 0.83221 0.95901 1.43201 1.36339 1.04710 1.47197 1.20247 0.82539 0.87626 0.79466 1.90799 1.26300 1.77294 1.41870 1.22390 0.94322 0.90070 0.96795 1.86153 1.51340 1.18301 1.64264 1.18977 0.94916 0.82029 0.95826 1.21273 0.99985 0.96210 1.05006 1.20863 0.98241 0.93223 0.96634 1.20949 0.96108 1.00112 1.00464 1.19046 0.95246 0.93129 0.96090 1.24788 1.00739 1.09509 0.84457 1.86519 1.66675 1.65830 1.15859 0.85679 0.81505 0.73891 0.81596 1.17070 1.17257 1.18050 1.20237 1.00702 0.92794 0.99671 1.22610 0.98758 0.90009 0.95765 1.67682 1.11406 1.09589 1.29455 1.22680 0.93533 1.00303 0.88087 0.91099 0.90844 0.90982 0.90970 0.90684 0.90948 0.91033 0.90708 0.91157 0.83808 0.74863 0.88215 0.88310 0.85170 0.85023 0.85881 0.90273 0.77092 0.84515 0.82692 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.15 8.65 101.05 0.87 1.03 16 2 Si 1.07 -1.82 12.39 -169.99 -2.11 -3.93 16 3 C -0.45 0.81 8.54 101.05 0.86 1.68 16 4 C -0.45 0.30 8.58 101.05 0.87 1.17 16 5 C -0.41 -0.34 4.59 -39.47 -0.18 -0.52 16 6 C -0.05 -0.09 8.01 -39.10 -0.31 -0.41 16 7 C 0.08 0.10 6.31 -83.54 -0.53 -0.43 16 8 N -0.67 0.94 5.35 -9.77 -0.05 0.89 16 9 C 0.52 0.43 7.67 -10.99 -0.08 0.34 16 10 O -0.49 -2.59 14.19 -14.36 -0.20 -2.79 16 11 C 0.04 -0.07 5.22 36.00 0.19 0.12 16 12 O -0.29 -0.71 9.67 -39.35 -0.38 -1.09 16 13 C 0.13 0.25 6.69 -39.22 -0.26 -0.01 16 14 C -0.21 0.04 9.04 -39.43 -0.36 -0.31 16 15 C -0.07 0.01 10.04 -39.60 -0.40 -0.38 16 16 C -0.16 -0.14 8.67 -39.56 -0.34 -0.49 16 17 C -0.03 -0.06 5.38 -104.65 -0.56 -0.62 16 18 C -0.08 0.01 2.79 36.01 0.10 0.11 16 19 O -0.54 -0.27 12.81 -35.23 -0.45 -0.72 16 20 Si 0.95 -0.72 25.14 -169.99 -4.27 -4.99 16 21 H -0.25 -0.12 7.04 56.52 0.40 0.27 16 22 H -0.25 0.07 7.11 56.52 0.40 0.47 16 23 H -0.26 0.16 7.11 56.52 0.40 0.56 16 24 C -0.12 -0.30 9.62 -39.44 -0.38 -0.68 16 25 C 0.09 0.11 11.12 -17.33 -0.19 -0.08 16 26 N -0.47 -1.41 10.35 -13.09 -0.14 -1.55 16 27 C 0.11 0.17 10.45 -17.53 -0.18 -0.02 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 -0.06 7.96 -51.92 -0.41 -0.48 16 30 H 0.07 0.06 7.96 -51.93 -0.41 -0.36 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.16 7.71 -51.93 -0.40 -0.56 16 34 H 0.07 0.01 7.77 -51.93 -0.40 -0.39 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 37 H 0.14 0.35 6.04 -52.48 -0.32 0.03 16 38 H 0.41 -2.23 8.82 -40.82 -0.36 -2.59 16 39 H 0.10 -0.42 7.65 -51.92 -0.40 -0.81 16 40 H 0.10 -0.43 7.67 -51.93 -0.40 -0.83 16 41 H 0.13 -0.42 6.30 -52.48 -0.33 -0.75 16 42 H 0.13 -0.35 8.06 -52.48 -0.42 -0.77 16 43 H 0.12 -0.05 4.86 -52.48 -0.26 -0.30 16 44 H 0.08 -0.14 7.96 -51.93 -0.41 -0.56 16 45 H 0.38 -1.54 8.74 45.56 0.40 -1.14 16 46 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 47 H 0.16 -0.25 8.06 -52.49 -0.42 -0.67 16 48 H 0.16 -0.14 7.45 -52.49 -0.39 -0.53 16 LS Contribution 403.43 15.07 6.08 6.08 Total: 0.00 -10.93 403.43 -8.64 -19.58 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: -6.23 Total: -11.96 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.89 Total: 0.50 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: -0.19 Total: -0.66 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -1.04 Total: -4.61 kcal Atomic # 14 Polarization: -2.54 SS G_CDS: -6.38 Total: -8.92 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -10.93 -8.64 -19.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.572 kcal (2) G-P(sol) polarization free energy of solvation -10.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds