Wall clock time and date at job start Sun Mar 7 2021 12:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86302 * 109.47387 * 2 1 4 4 C 1.86304 * 109.47213 * 240.00173 * 2 1 3 5 5 C 1.86799 * 109.47232 * 119.99927 * 2 1 3 6 6 C 1.38506 * 120.38286 * 89.99679 * 5 2 1 7 7 C 1.39272 * 118.36449 * 179.97438 * 6 5 2 8 8 N 1.39955 * 120.49257 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99575 * 327.33846 * 8 7 6 10 10 O 1.21290 * 120.00338 * 354.73521 * 9 8 7 11 11 C 1.50697 * 120.00061 * 174.73332 * 9 8 7 12 12 O 1.42898 * 109.47249 * 180.02562 * 11 9 8 13 13 C 1.35905 * 116.99917 * 180.02562 * 12 11 9 14 14 C 1.38707 * 120.05523 * 359.72609 * 13 12 11 15 15 C 1.38166 * 119.94120 * 179.72475 * 14 13 12 16 16 C 1.38247 * 120.05658 * 0.56890 * 15 14 13 17 17 C 1.38283 * 120.10875 * 359.68195 * 16 15 14 18 18 C 1.50700 * 119.97026 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47530 * 245.02331 * 18 17 16 20 20 Si 1.86298 * 109.47249 * 5.02636 * 18 17 16 21 21 H 1.48501 * 109.47356 * 299.99882 * 20 18 17 22 22 H 1.48500 * 109.47289 * 59.99465 * 20 18 17 23 23 H 1.48501 * 109.47470 * 179.97438 * 20 18 17 24 24 C 1.38124 * 120.05599 * 0.04732 * 17 16 15 25 25 C 1.38844 * 119.02442 * 0.27373 * 7 6 5 26 26 N 1.31826 * 120.66298 * 359.41158 * 25 7 6 27 27 C 1.31862 * 121.79057 * 0.62778 * 26 25 7 28 28 H 1.09000 * 109.47205 * 300.00063 * 1 2 3 29 29 H 1.09009 * 109.47013 * 59.99724 * 1 2 3 30 30 H 1.08996 * 109.47560 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47546 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47231 * 300.00199 * 3 2 1 33 33 H 1.09000 * 109.46999 * 59.99811 * 3 2 1 34 34 H 1.09000 * 109.46567 * 300.00039 * 4 2 1 35 35 H 1.08999 * 109.47001 * 60.00049 * 4 2 1 36 36 H 1.09000 * 109.46881 * 180.02562 * 4 2 1 37 37 H 1.08008 * 120.81483 * 0.02562 * 6 5 2 38 38 H 0.96997 * 120.00416 * 147.33783 * 8 7 6 39 39 H 1.09007 * 109.47425 * 300.00055 * 11 9 8 40 40 H 1.09002 * 109.47349 * 59.99658 * 11 9 8 41 41 H 1.08003 * 120.02927 * 359.97438 * 14 13 12 42 42 H 1.08004 * 119.97478 * 180.27817 * 15 14 13 43 43 H 1.08005 * 119.94334 * 179.70442 * 16 15 14 44 44 H 1.08999 * 109.46876 * 125.02156 * 18 17 16 45 45 H 0.96703 * 114.00160 * 180.02562 * 19 18 17 46 46 H 1.07999 * 120.02455 * 180.02562 * 24 17 16 47 47 H 1.08001 * 119.67134 * 179.70682 * 25 7 6 48 48 H 1.07994 * 119.53550 * 179.67705 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7191 -2.2456 1.4998 7 6 3.1836 -2.8591 2.6606 8 7 3.4348 -4.2357 2.6845 9 6 2.6854 -5.0705 1.9374 10 8 1.7339 -4.6422 1.3192 11 6 3.0298 -6.5360 1.8702 12 8 2.0963 -7.2063 1.0209 13 6 2.2662 -8.5440 0.8518 14 6 3.3130 -9.1970 1.4856 15 6 3.4801 -10.5580 1.3166 16 6 2.6121 -11.2670 0.5073 17 6 1.5707 -10.6174 -0.1298 18 6 0.6260 -11.3934 -1.0109 19 8 0.7601 -10.9478 -2.3620 20 14 1.0341 -13.2084 -0.9122 21 1 2.4299 -13.4276 -1.3693 22 1 0.8947 -13.6715 0.4918 23 1 0.1028 -13.9732 -1.7799 24 6 1.3961 -9.2578 0.0403 25 6 3.3889 -2.0859 3.7954 26 7 3.1597 -0.7878 3.7749 27 6 2.7193 -0.1771 2.6924 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1206 -1.9058 -1.5211 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8786 -1.5209 37 1 2.5460 -2.8199 0.6016 38 1 4.1482 -4.5890 3.2387 39 1 4.0362 -6.6548 1.4685 40 1 2.9850 -6.9661 2.8708 41 1 3.9945 -8.6426 2.1139 42 1 4.2924 -11.0678 1.8135 43 1 2.7472 -12.3301 0.3726 44 1 -0.3985 -11.2326 -0.6753 45 1 0.1800 -11.4048 -2.9863 46 1 0.5824 -8.7511 -0.4571 47 1 3.7443 -2.5517 4.7026 48 1 2.5389 0.8873 2.7178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:17:28 Heat of formation + Delta-G solvation = -73.879805 kcal Electronic energy + Delta-G solvation = -28578.991485 eV Core-core repulsion = 24530.139759 eV Total energy + Delta-G solvation = -4048.851727 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.04004 -41.26885 -40.20760 -38.92352 -37.31706 -36.29809 -33.12571 -32.61398 -32.08418 -31.16086 -29.45006 -29.09484 -28.35601 -28.29036 -26.80353 -24.88116 -24.11343 -23.71348 -22.44356 -21.56098 -19.27975 -19.14386 -18.49968 -18.09667 -17.86225 -17.61201 -17.36259 -17.11836 -16.75053 -15.89633 -15.71515 -15.64819 -15.23772 -14.90580 -14.88805 -14.71708 -14.49136 -14.22286 -14.08836 -13.88161 -13.83050 -13.79776 -13.63961 -13.38332 -13.30351 -13.20068 -13.11521 -12.99437 -12.54314 -12.23244 -12.13279 -12.08260 -11.94801 -11.87611 -11.67604 -11.27502 -11.13803 -10.82722 -10.40818 -10.39080 -10.17912 -9.92235 -9.40542 -9.32145 -0.07391 0.17523 0.20569 0.34756 1.11872 1.26555 1.30601 1.47055 1.52139 1.68977 1.89663 1.96173 2.04969 2.43664 2.58188 2.61165 2.85856 3.31211 3.45011 3.64173 3.78057 3.82043 3.83699 3.95739 3.99571 4.05539 4.11947 4.21701 4.24611 4.27348 4.34465 4.47575 4.63446 4.75730 4.76961 4.80651 4.82038 4.90285 4.90799 4.95178 5.01134 5.03899 5.11282 5.18729 5.31594 5.42430 5.52480 5.59873 5.62406 5.68347 5.73725 6.10441 6.30663 6.78300 6.84194 6.94771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.130 2.870 3 C -0.451 4.451 4 C -0.465 4.465 5 C -0.415 4.415 6 C -0.067 4.067 7 C 0.074 3.926 8 N -0.648 5.648 9 C 0.513 3.487 10 O -0.545 6.545 11 C 0.041 3.959 12 O -0.319 6.319 13 C 0.116 3.884 14 C -0.202 4.202 15 C -0.072 4.072 16 C -0.173 4.173 17 C -0.050 4.050 18 C -0.093 4.093 19 O -0.564 6.564 20 Si 0.991 3.009 21 H -0.265 1.265 22 H -0.254 1.254 23 H -0.257 1.257 24 C -0.144 4.144 25 C 0.083 3.917 26 N -0.499 5.499 27 C 0.098 3.902 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.435 0.565 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.398 0.602 46 H 0.121 0.879 47 H 0.181 0.819 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -2.756 1.816 5.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.317 2.683 3 C -0.560 4.560 4 C -0.571 4.571 5 C -0.455 4.455 6 C -0.095 4.095 7 C -0.022 4.022 8 N -0.297 5.297 9 C 0.301 3.699 10 O -0.421 6.421 11 C -0.037 4.037 12 O -0.233 6.233 13 C 0.071 3.929 14 C -0.220 4.220 15 C -0.090 4.090 16 C -0.191 4.191 17 C -0.050 4.050 18 C -0.202 4.202 19 O -0.373 6.373 20 Si 0.814 3.186 21 H -0.190 1.190 22 H -0.178 1.178 23 H -0.181 1.181 24 C -0.163 4.163 25 C -0.077 4.077 26 N -0.208 5.208 27 C -0.059 4.059 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.276 0.724 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.150 0.850 44 H 0.108 0.892 45 H 0.249 0.751 46 H 0.139 0.861 47 H 0.198 0.802 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.931 -2.454 2.422 5.229 hybrid contribution -0.436 -0.738 -0.665 1.085 sum 3.495 -3.193 1.757 5.049 Atomic orbital electron populations 1.26323 1.21978 1.03883 1.04979 0.77144 0.65030 0.65386 0.60749 1.26115 1.06670 1.17634 1.05539 1.26319 1.06512 1.07836 1.16477 1.28945 1.03989 0.99069 1.13508 1.21657 0.95479 0.95197 0.97172 1.18976 1.03185 0.84324 0.95748 1.43060 1.36314 1.03618 1.46750 1.20798 0.81770 0.88808 0.78552 1.90782 1.28777 1.78326 1.44199 1.22684 0.94813 0.87922 0.98272 1.86103 1.52994 1.18786 1.65394 1.19127 0.95592 0.81951 0.96228 1.21626 0.99469 0.96409 1.04539 1.21276 0.98408 0.93400 0.95892 1.21214 0.96242 1.00806 1.00866 1.19322 0.96022 0.93020 0.96621 1.24974 1.01164 1.10022 0.84042 1.86470 1.67563 1.66724 1.16568 0.85111 0.80046 0.72596 0.80857 1.19002 1.17806 1.18113 1.20318 1.01333 0.93592 1.01061 1.22997 0.98437 0.89683 0.96566 1.67697 1.12268 1.10518 1.30284 1.23080 0.93435 1.01390 0.87946 0.90965 0.90171 0.92611 0.90738 0.90128 0.90162 0.92401 0.90139 0.91035 0.84925 0.72427 0.85088 0.84900 0.81731 0.82182 0.84972 0.89177 0.75133 0.86133 0.80171 0.80576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.19 8.65 113.37 0.98 0.79 16 2 Si 1.13 -3.15 12.39 68.60 0.85 -2.30 16 3 C -0.45 1.99 8.54 113.37 0.97 2.96 16 4 C -0.46 0.05 8.58 113.37 0.97 1.02 16 5 C -0.41 -1.10 4.59 22.34 0.10 -1.00 16 6 C -0.07 -0.38 8.01 22.58 0.18 -0.20 16 7 C 0.07 0.22 6.31 38.24 0.24 0.47 16 8 N -0.65 1.96 5.35 -303.19 -1.62 0.34 16 9 C 0.51 1.14 7.67 87.66 0.67 1.81 16 10 O -0.55 -7.02 14.19 15.98 0.23 -6.79 16 11 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 12 O -0.32 -1.90 9.67 -73.44 -0.71 -2.61 16 13 C 0.12 0.53 6.69 22.50 0.15 0.68 16 14 C -0.20 0.36 9.04 22.36 0.20 0.56 16 15 C -0.07 0.12 10.04 22.25 0.22 0.35 16 16 C -0.17 -0.32 8.67 22.28 0.19 -0.12 16 17 C -0.05 -0.23 5.38 -19.88 -0.11 -0.34 16 18 C -0.09 -0.08 2.79 71.24 0.20 0.12 16 19 O -0.56 -1.34 12.81 -148.98 -1.91 -3.25 16 20 Si 0.99 -1.28 25.14 68.60 1.72 0.44 16 21 H -0.27 -0.39 7.04 99.48 0.70 0.31 16 22 H -0.25 0.17 7.11 99.48 0.71 0.88 16 23 H -0.26 0.38 7.11 99.48 0.71 1.09 16 24 C -0.14 -1.05 9.62 22.36 0.22 -0.83 16 25 C 0.08 0.20 11.12 84.84 0.94 1.15 16 26 N -0.50 -3.09 10.35 -195.33 -2.02 -5.12 16 27 C 0.10 0.33 10.45 84.69 0.89 1.22 16 28 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 29 H 0.08 -0.09 7.96 -2.38 -0.02 -0.11 16 30 H 0.05 0.21 7.96 -2.39 -0.02 0.19 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 33 H 0.08 -0.45 7.71 -2.39 -0.02 -0.46 16 34 H 0.06 0.16 7.77 -2.39 -0.02 0.14 16 35 H 0.08 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 37 H 0.13 1.02 6.04 -2.91 -0.02 1.00 16 38 H 0.44 -5.30 8.82 -92.71 -0.82 -6.12 16 39 H 0.13 -1.38 7.65 -2.38 -0.02 -1.40 16 40 H 0.13 -1.47 7.67 -2.39 -0.02 -1.49 16 41 H 0.17 -1.60 6.30 -2.91 -0.02 -1.62 16 42 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16 43 H 0.13 -0.12 4.86 -2.91 -0.01 -0.14 16 44 H 0.09 -0.21 7.96 -2.39 -0.02 -0.23 16 45 H 0.40 -2.80 8.74 -74.06 -0.65 -3.45 16 46 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 47 H 0.18 -0.75 8.06 -2.91 -0.02 -0.77 16 48 H 0.18 -0.37 7.45 -2.91 -0.02 -0.39 16 Total: 0.00 -28.43 403.43 4.21 -24.22 By element: Atomic # 1 Polarization: -14.05 SS G_CDS: 0.28 Total: -13.77 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 7.40 Total: 8.83 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -3.65 Total: -4.78 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -2.39 Total: -12.65 kcal Atomic # 14 Polarization: -4.43 SS G_CDS: 2.57 Total: -1.86 kcal Total: -28.43 4.21 -24.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.660 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds