Wall clock time and date at job start Sun Mar 7 2021 12:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99628 * 2 1 4 4 C 1.38754 * 120.03119 * 0.02562 * 3 2 1 5 5 C 1.38199 * 120.05493 * 179.72712 * 4 3 2 6 6 C 1.38151 * 120.10633 * 0.50374 * 5 4 3 7 7 C 1.50703 * 119.97251 * 179.77068 * 6 5 4 8 8 O 1.42900 * 109.46841 * 254.73044 * 7 6 5 9 9 Si 1.86302 * 109.46788 * 14.72227 * 7 6 5 10 10 H 1.48499 * 109.47051 * 179.97438 * 9 7 6 11 11 H 1.48495 * 109.47379 * 300.00375 * 9 7 6 12 12 H 1.48503 * 109.46750 * 60.00665 * 9 7 6 13 13 C 1.38793 * 120.05645 * 359.49458 * 6 5 4 14 14 O 1.35894 * 120.02882 * 180.27092 * 13 6 5 15 15 C 1.42898 * 117.00354 * 179.97438 * 14 13 6 16 16 C 1.50701 * 109.47364 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99979 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99790 * 180.02562 * 16 15 14 19 19 C 1.39955 * 119.99626 * 174.74023 * 18 16 15 20 20 C 1.39236 * 120.48927 * 327.16675 * 19 18 16 21 21 C 1.38549 * 118.36175 * 179.73705 * 20 19 18 22 22 Si 1.86796 * 120.38417 * 180.26281 * 21 20 19 23 23 C 1.86302 * 109.46974 * 270.27794 * 22 21 20 24 24 C 1.86296 * 109.47144 * 30.27569 * 22 21 20 25 25 C 1.86300 * 109.47338 * 150.28047 * 22 21 20 26 26 C 1.38232 * 119.23284 * 0.53689 * 21 20 19 27 27 N 1.31879 * 120.92412 * 359.72562 * 26 21 20 28 28 C 1.31797 * 121.79411 * 359.97438 * 27 26 21 29 29 C 1.38617 * 119.94598 * 0.25720 * 13 6 5 30 30 H 1.09003 * 109.47317 * 60.00169 * 1 2 3 31 31 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47262 * 300.00192 * 1 2 3 33 33 H 1.07997 * 119.96881 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.94243 * 180.27787 * 5 4 3 35 35 H 1.08991 * 109.47042 * 134.72641 * 7 6 5 36 36 H 0.96703 * 113.99958 * 180.02562 * 8 7 6 37 37 H 1.08994 * 109.47456 * 300.00686 * 15 14 13 38 38 H 1.09003 * 109.46934 * 60.00524 * 15 14 13 39 39 H 0.96993 * 120.00336 * 354.73939 * 18 16 15 40 40 H 1.08006 * 120.82151 * 359.97438 * 20 19 18 41 41 H 1.09004 * 109.47223 * 60.00096 * 23 22 21 42 42 H 1.09002 * 109.47283 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47165 * 300.00124 * 23 22 21 44 44 H 1.09002 * 109.47158 * 60.00513 * 24 22 21 45 45 H 1.08997 * 109.47265 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.47366 * 300.00523 * 24 22 21 47 47 H 1.08998 * 109.47098 * 59.99694 * 25 22 21 48 48 H 1.08997 * 109.47326 * 180.02562 * 25 22 21 49 49 H 1.09003 * 109.46587 * 299.99830 * 25 22 21 50 50 H 1.08004 * 119.53374 * 179.74820 * 26 21 20 51 51 H 1.08006 * 119.66462 * 180.02562 * 28 27 26 52 52 H 1.08000 * 120.05468 * 179.97438 * 29 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9176 3.6066 0.0062 6 6 3.2970 3.6822 0.0009 7 6 3.9774 5.0269 0.0019 8 8 4.5038 5.2953 -1.2992 9 14 2.7436 6.3466 0.4569 10 1 3.4141 7.6716 0.4586 11 1 1.6371 6.3524 -0.5333 12 1 2.1966 6.0677 1.8091 13 6 4.0568 2.5207 0.0004 14 8 5.4137 2.5957 0.0007 15 6 6.1318 1.3602 0.0007 16 6 7.6126 1.6399 0.0017 17 8 8.0136 2.7845 0.0028 18 7 8.4914 0.6179 0.0014 19 6 9.8628 0.8744 -0.1088 20 6 10.3215 1.9548 -0.8578 21 6 11.6880 2.1710 -0.9325 22 14 12.3648 3.6079 -1.9157 23 6 12.6646 3.0708 -3.6742 24 6 11.1361 5.0081 -1.8950 25 6 13.9687 4.1779 -1.1585 26 6 12.5449 1.3078 -0.2759 27 7 12.0787 0.2900 0.4212 28 6 10.7865 0.0519 0.5230 29 6 3.4305 1.2841 -0.0001 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2123 2.3184 0.0005 34 1 1.3280 4.5115 0.0112 35 1 4.7895 5.0226 0.7287 36 1 4.9570 6.1464 -1.3723 37 1 5.8699 0.7877 0.8905 38 1 5.8704 0.7881 -0.8895 39 1 8.1733 -0.2952 0.0775 40 1 9.6290 2.6104 -1.3649 41 1 11.7262 2.7373 -4.1173 42 1 13.0591 3.9093 -4.2480 43 1 13.3834 2.2515 -3.6863 44 1 10.9607 5.3224 -0.8661 45 1 11.5312 5.8467 -2.4683 46 1 10.1977 4.6746 -2.3380 47 1 14.6876 3.3586 -1.1706 48 1 14.3634 5.0166 -1.7319 49 1 13.7932 4.4921 -0.1296 50 1 13.6112 1.4694 -0.3342 51 1 10.4424 -0.7915 1.1034 52 1 4.0200 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_4974312.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:17:55 Heat of formation + Delta-G solvation = -107.126273 kcal Electronic energy + Delta-G solvation = -33664.615540 eV Core-core repulsion = 29140.102327 eV Total energy + Delta-G solvation = -4524.513213 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.08653 -41.59089 -40.45100 -39.75642 -38.23977 -37.03301 -36.27016 -33.10503 -32.43779 -31.91644 -31.10775 -29.43756 -29.21469 -28.41303 -28.31528 -28.27119 -26.07342 -24.96044 -24.29929 -23.38525 -22.41871 -21.68474 -19.95068 -19.24440 -18.48419 -18.20935 -18.04199 -17.68931 -17.58982 -17.22796 -16.87639 -16.86760 -16.64358 -15.97035 -15.74362 -15.58414 -15.26565 -15.06067 -14.86999 -14.84269 -14.43146 -14.18224 -14.06483 -13.85213 -13.80506 -13.77954 -13.66540 -13.40393 -13.33551 -13.24026 -13.17572 -13.11771 -12.97885 -12.55107 -12.43726 -12.17871 -12.08393 -11.96965 -11.86811 -11.73342 -11.62182 -11.26266 -11.11687 -10.81505 -10.40179 -10.24422 -10.15288 -9.74031 -9.38586 -9.13559 -0.06046 0.15000 0.22027 0.26047 1.15143 1.23941 1.30683 1.44176 1.49154 1.70197 1.86780 1.96510 2.07099 2.19508 2.44560 2.50847 2.59570 2.87083 3.32663 3.52934 3.64968 3.66478 3.83158 3.86941 3.94123 3.97494 4.03079 4.13108 4.16308 4.25839 4.28362 4.33777 4.36060 4.39048 4.41997 4.58681 4.75972 4.77291 4.80133 4.84484 4.86441 4.89045 4.90628 4.96874 5.02441 5.05309 5.12413 5.18470 5.24942 5.40360 5.55231 5.63848 5.68076 5.74149 6.03182 6.20264 6.33283 6.80962 6.85071 6.95892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.164 3.836 4 C -0.239 4.239 5 C -0.052 4.052 6 C -0.163 4.163 7 C -0.076 4.076 8 O -0.561 6.561 9 Si 0.983 3.017 10 H -0.259 1.259 11 H -0.253 1.253 12 H -0.253 1.253 13 C 0.180 3.820 14 O -0.298 6.298 15 C 0.037 3.963 16 C 0.516 3.484 17 O -0.537 6.537 18 N -0.650 5.650 19 C 0.076 3.924 20 C -0.067 4.067 21 C -0.414 4.414 22 Si 1.130 2.870 23 C -0.456 4.456 24 C -0.466 4.466 25 C -0.455 4.455 26 C 0.097 3.903 27 N -0.499 5.499 28 C 0.082 3.918 29 C -0.249 4.249 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.068 0.932 36 H 0.391 0.609 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.434 0.566 40 H 0.134 0.866 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.177 0.823 51 H 0.180 0.820 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 -2.880 -0.423 4.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.117 3.883 4 C -0.258 4.258 5 C -0.070 4.070 6 C -0.164 4.164 7 C -0.185 4.185 8 O -0.369 6.369 9 Si 0.805 3.195 10 H -0.183 1.183 11 H -0.178 1.178 12 H -0.177 1.177 13 C 0.134 3.866 14 O -0.210 6.210 15 C -0.041 4.041 16 C 0.303 3.697 17 O -0.412 6.412 18 N -0.299 5.299 19 C -0.021 4.021 20 C -0.094 4.094 21 C -0.455 4.455 22 Si 1.316 2.684 23 C -0.564 4.564 24 C -0.572 4.572 25 C -0.563 4.563 26 C -0.059 4.059 27 N -0.208 5.208 28 C -0.078 4.078 29 C -0.268 4.268 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.274 0.726 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.194 0.806 51 H 0.197 0.803 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.124 -2.666 0.143 4.110 hybrid contribution -0.637 0.110 -0.228 0.685 sum -3.761 -2.556 -0.085 4.548 Atomic orbital electron populations 1.23405 0.76069 1.05776 1.02585 1.86054 1.23688 1.26349 1.87944 1.18844 0.91786 0.84833 0.92804 1.21368 1.01625 0.91271 1.11487 1.20895 0.92408 0.98777 0.94895 1.18798 0.92968 0.92920 1.11735 1.24700 1.04403 1.00689 0.88678 1.86467 1.77343 1.43723 1.29397 0.85281 0.77883 0.76358 0.79946 1.18326 1.17765 1.17710 1.18455 0.81689 0.92962 0.93501 1.86172 1.15276 1.31355 1.88224 1.22698 0.87329 0.86754 1.07333 1.20646 0.88642 0.84927 0.75494 1.90781 1.80303 1.22615 1.47538 1.43066 1.03111 1.11190 1.72530 1.18966 0.84320 0.99359 0.99410 1.21656 0.96679 0.96122 0.94990 1.28963 0.96556 1.12671 1.07275 0.77161 0.65322 0.61226 0.64658 1.26196 1.04922 1.06440 1.18806 1.26363 1.11835 1.14913 1.04054 1.26163 1.16059 1.06854 1.07254 1.23069 1.01575 0.89245 0.92056 1.67687 1.15451 1.20137 1.17475 1.22981 0.87837 1.00042 0.96918 1.20584 0.93303 0.97520 1.15436 0.91524 0.86328 0.91331 0.82633 0.83785 0.91388 0.76002 0.85193 0.85587 0.72584 0.84840 0.91788 0.90149 0.90615 0.92166 0.90179 0.92230 0.89999 0.90094 0.91357 0.80617 0.80307 0.82249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.48 10.50 -92.41 -0.97 -1.45 16 3 C 0.16 0.48 6.68 22.49 0.15 0.63 16 4 C -0.24 -0.40 9.04 22.38 0.20 -0.19 16 5 C -0.05 -0.19 8.65 22.24 0.19 0.01 16 6 C -0.16 -1.08 5.31 -19.75 -0.10 -1.19 16 7 C -0.08 -0.39 2.37 71.24 0.17 -0.22 16 8 O -0.56 -3.80 12.86 -148.98 -1.92 -5.72 16 9 Si 0.98 1.31 25.48 68.60 1.75 3.06 16 10 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 11 H -0.25 -0.48 6.74 99.48 0.67 0.19 16 12 H -0.25 -0.46 7.11 99.48 0.71 0.25 16 13 C 0.18 1.08 6.66 22.49 0.15 1.23 16 14 O -0.30 -2.00 9.00 -73.32 -0.66 -2.66 16 15 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 16 C 0.52 1.48 7.67 87.66 0.67 2.16 16 17 O -0.54 -6.70 14.20 15.98 0.23 -6.47 16 18 N -0.65 1.41 5.36 -303.19 -1.62 -0.22 16 19 C 0.08 0.26 6.31 38.24 0.24 0.50 16 20 C -0.07 -0.38 8.01 22.58 0.18 -0.20 16 21 C -0.41 -1.11 4.59 22.34 0.10 -1.00 16 22 Si 1.13 -3.33 12.38 68.60 0.85 -2.48 16 23 C -0.46 1.11 8.65 113.37 0.98 2.09 16 24 C -0.47 -0.65 8.59 113.37 0.97 0.32 16 25 C -0.45 1.61 8.54 113.37 0.97 2.57 16 26 C 0.10 0.34 10.45 84.68 0.89 1.23 16 27 N -0.50 -3.24 10.35 -195.32 -2.02 -5.26 16 28 C 0.08 0.24 11.12 84.85 0.94 1.18 16 29 C -0.25 -0.63 8.97 22.46 0.20 -0.43 16 30 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 31 H 0.12 -1.04 8.14 -2.39 -0.02 -1.05 16 32 H 0.07 -0.49 7.66 -2.38 -0.02 -0.51 16 33 H 0.16 -0.56 6.29 -2.91 -0.02 -0.57 16 34 H 0.14 0.05 4.87 -2.91 -0.01 0.03 16 35 H 0.07 0.38 7.82 -2.39 -0.02 0.36 16 36 H 0.39 -0.54 8.74 -74.05 -0.65 -1.18 16 37 H 0.13 -1.12 7.66 -2.39 -0.02 -1.13 16 38 H 0.13 -0.93 7.66 -2.39 -0.02 -0.95 16 39 H 0.43 -4.67 8.82 -92.71 -0.82 -5.49 16 40 H 0.13 1.02 6.07 -2.91 -0.02 1.00 16 41 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 42 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 43 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 44 H 0.06 0.22 7.96 -2.39 -0.02 0.20 16 45 H 0.08 -0.04 7.96 -2.39 -0.02 -0.06 16 46 H 0.06 0.21 7.78 -2.39 -0.02 0.19 16 47 H 0.08 -0.43 7.71 -2.39 -0.02 -0.44 16 48 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 49 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 50 H 0.18 -0.34 7.45 -2.91 -0.02 -0.36 16 51 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 52 H 0.16 -0.50 6.30 -2.91 -0.02 -0.51 16 Total: 0.00 -27.50 432.16 4.25 -23.25 By element: Atomic # 1 Polarization: -12.28 SS G_CDS: 0.22 Total: -12.06 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 8.39 Total: 10.00 kcal Atomic # 7 Polarization: -1.83 SS G_CDS: -3.65 Total: -5.48 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -3.32 Total: -16.30 kcal Atomic # 14 Polarization: -2.02 SS G_CDS: 2.60 Total: 0.58 kcal Total: -27.50 4.25 -23.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_4974312.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.876 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds