Wall clock time and date at job start Sun Mar 7 2021 12:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35995 * 117.00398 * 2 1 4 4 C 1.38522 * 120.07021 * 359.97148 * 3 2 1 5 5 C 1.38279 * 120.00108 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.93174 * 180.02562 * 5 4 3 7 7 O 1.42909 * 109.46889 * 300.00634 * 6 5 4 8 8 Si 1.86300 * 109.47598 * 180.02562 * 6 5 4 9 9 H 1.48493 * 109.46931 * 59.99747 * 8 6 5 10 10 H 1.48499 * 109.47109 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46845 * 299.99872 * 8 6 5 12 12 C 1.38209 * 120.14564 * 359.97438 * 5 4 3 13 13 C 1.38288 * 120.14552 * 359.76688 * 12 5 4 14 14 C 1.38523 * 119.99691 * 0.50427 * 13 12 5 15 15 O 1.35998 * 120.07172 * 179.74316 * 14 13 12 16 16 C 1.42903 * 117.00125 * 359.73362 * 15 14 13 17 17 C 1.50693 * 109.47471 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99710 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00351 * 179.97438 * 17 16 15 20 20 C 1.39949 * 119.99944 * 185.26496 * 19 17 16 21 21 C 1.39243 * 120.49362 * 32.68450 * 20 19 17 22 22 C 1.38539 * 118.36129 * 179.97438 * 21 20 19 23 23 Si 1.86803 * 120.37766 * 180.02562 * 22 21 20 24 24 C 1.86296 * 109.47314 * 269.95292 * 23 22 21 25 25 C 1.86297 * 109.47354 * 29.95578 * 23 22 21 26 26 C 1.86300 * 109.47050 * 149.95502 * 23 22 21 27 27 C 1.38224 * 119.24008 * 359.97438 * 22 21 20 28 28 N 1.31878 * 120.91977 * 0.02562 * 27 22 21 29 29 C 1.31788 * 121.79905 * 0.02562 * 28 27 22 30 30 H 1.08996 * 109.47257 * 300.00383 * 1 2 3 31 31 H 1.09000 * 109.47192 * 60.00355 * 1 2 3 32 32 H 1.08998 * 109.47440 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.99941 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.47210 * 59.99721 * 6 5 4 35 35 H 0.96697 * 113.99835 * 299.99598 * 7 6 5 36 36 H 1.08001 * 119.92953 * 180.02562 * 12 5 4 37 37 H 1.08005 * 119.99982 * 180.27554 * 13 12 5 38 38 H 1.08997 * 109.47418 * 59.99209 * 16 15 14 39 39 H 1.09005 * 109.46636 * 299.99715 * 16 15 14 40 40 H 0.96997 * 119.99541 * 5.26196 * 19 17 16 41 41 H 1.08004 * 120.81278 * 359.97438 * 21 20 19 42 42 H 1.09005 * 109.47078 * 59.99939 * 24 23 22 43 43 H 1.08999 * 109.47373 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.47078 * 300.00431 * 24 23 22 45 45 H 1.09006 * 109.47332 * 59.99555 * 25 23 22 46 46 H 1.08996 * 109.47734 * 179.97438 * 25 23 22 47 47 H 1.09002 * 109.47247 * 299.99896 * 25 23 22 48 48 H 1.08996 * 109.47311 * 59.99764 * 26 23 22 49 49 H 1.09004 * 109.47343 * 180.02562 * 26 23 22 50 50 H 1.09000 * 109.47151 * 299.99734 * 26 23 22 51 51 H 1.08008 * 119.53699 * 180.30249 * 27 22 21 52 52 H 1.08004 * 119.66854 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2935 2.3744 -0.0006 5 6 1.9229 3.6057 -0.0011 6 6 1.1022 4.8696 -0.0012 7 8 0.2773 4.9018 -1.1677 8 14 2.2371 6.3471 -0.0027 9 1 3.0929 6.3125 -1.2158 10 1 1.4283 7.5925 -0.0034 11 1 3.0946 6.3137 1.2092 12 6 3.3030 3.6798 -0.0005 13 6 4.0605 2.5229 0.0055 14 6 3.4363 1.2863 0.0003 15 8 4.1799 0.1475 0.0009 16 6 5.6007 0.3005 0.0011 17 6 6.2523 -1.0583 0.0024 18 8 5.5673 -2.0593 0.0036 19 7 7.5961 -1.1614 0.0023 20 6 8.2015 -2.4183 -0.1077 21 6 7.6011 -3.4289 -0.8542 22 6 8.2391 -4.6560 -0.9338 23 14 7.4842 -6.0510 -1.9204 24 6 6.3692 -7.0582 -0.8191 25 6 6.4924 -5.3477 -3.3319 26 6 8.8383 -7.1387 -2.5944 27 6 9.4412 -4.8359 -0.2756 28 7 9.9839 -3.8582 0.4235 29 6 9.4101 -2.6763 0.5260 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2149 2.3193 -0.0006 34 1 0.4736 4.8948 0.8889 35 1 0.7708 4.8821 -1.9990 36 1 3.7909 4.6433 -0.0005 37 1 5.1389 2.5835 0.0104 38 1 5.9069 0.8507 0.8908 39 1 5.9071 0.8498 -0.8892 40 1 8.1436 -0.3643 0.0783 41 1 6.6611 -3.2601 -1.3587 42 1 5.5769 -6.4219 -0.4247 43 1 5.9290 -7.8725 -1.3947 44 1 6.9495 -7.4697 0.0067 45 1 7.1448 -4.7584 -3.9763 46 1 6.0522 -6.1616 -3.9079 47 1 5.7000 -4.7113 -2.9376 48 1 9.4187 -7.5502 -1.7687 49 1 8.3979 -7.9525 -3.1705 50 1 9.4907 -6.5494 -3.2388 51 1 9.9452 -5.7891 -0.3384 52 1 9.8849 -1.9002 1.1081 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_60476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:21:52 Heat of formation + Delta-G solvation = -108.011122 kcal Electronic energy + Delta-G solvation = -33247.494530 eV Core-core repulsion = 28722.942947 eV Total energy + Delta-G solvation = -4524.551583 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 390.162 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.07890 -41.61573 -40.38194 -39.33376 -38.88917 -36.95479 -36.28104 -33.11984 -32.22332 -31.60711 -31.30103 -29.45928 -29.28583 -28.47141 -28.35037 -28.27997 -26.22285 -24.89838 -24.21520 -23.38852 -22.54550 -21.69563 -19.85899 -19.25837 -18.50097 -18.27063 -18.01369 -17.74826 -17.64009 -17.23709 -16.89563 -16.58513 -16.10785 -16.08801 -15.86737 -15.59720 -15.50826 -15.03361 -14.91361 -14.87566 -14.60613 -14.21000 -14.07790 -13.87280 -13.81675 -13.78408 -13.62524 -13.52997 -13.37411 -13.20191 -13.11396 -12.99464 -12.66629 -12.56864 -12.23341 -12.17453 -12.08959 -12.04878 -12.00049 -11.91156 -11.58343 -11.26781 -11.13059 -10.82715 -10.42297 -10.40748 -10.17172 -9.80292 -9.39023 -8.94485 -0.06687 0.14403 0.21124 0.24233 1.20005 1.26462 1.31668 1.50260 1.55121 1.69044 1.95102 1.96235 2.05002 2.29307 2.42609 2.53587 2.58245 2.86428 3.32575 3.49480 3.64502 3.68410 3.81326 3.82595 3.84110 3.98354 4.01196 4.12533 4.13339 4.23357 4.27317 4.32427 4.34626 4.36145 4.59197 4.64159 4.67681 4.75742 4.76665 4.80401 4.81801 4.90413 4.90960 4.97494 5.01852 5.04830 5.07839 5.11863 5.34043 5.52283 5.55559 5.59614 5.68336 5.73676 5.91051 6.17934 6.48468 6.70839 6.86393 6.95437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.080 3.920 4 C -0.148 4.148 5 C -0.116 4.116 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.987 3.013 9 H -0.246 1.246 10 H -0.280 1.280 11 H -0.251 1.251 12 C -0.124 4.124 13 C -0.160 4.160 14 C 0.085 3.915 15 O -0.312 6.312 16 C 0.038 3.962 17 C 0.513 3.487 18 O -0.545 6.545 19 N -0.648 5.648 20 C 0.074 3.926 21 C -0.067 4.067 22 C -0.415 4.415 23 Si 1.129 2.871 24 C -0.466 4.466 25 C -0.464 4.464 26 C -0.450 4.450 27 C 0.098 3.902 28 N -0.499 5.499 29 C 0.083 3.917 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.389 0.611 36 H 0.146 0.854 37 H 0.174 0.826 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.435 0.565 41 H 0.132 0.868 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.177 0.823 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 4.793 -1.865 5.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.034 3.966 4 C -0.167 4.167 5 C -0.117 4.117 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.810 3.190 9 H -0.169 1.169 10 H -0.206 1.206 11 H -0.175 1.175 12 C -0.142 4.142 13 C -0.178 4.178 14 C 0.039 3.961 15 O -0.226 6.226 16 C -0.040 4.040 17 C 0.300 3.700 18 O -0.420 6.420 19 N -0.297 5.297 20 C -0.022 4.022 21 C -0.095 4.095 22 C -0.455 4.455 23 Si 1.316 2.684 24 C -0.572 4.572 25 C -0.571 4.571 26 C -0.559 4.559 27 C -0.059 4.059 28 N -0.208 5.208 29 C -0.077 4.077 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.238 0.762 36 H 0.163 0.837 37 H 0.191 0.809 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.276 0.724 41 H 0.150 0.850 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.194 0.806 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.144 4.399 -0.951 5.490 hybrid contribution -0.869 0.356 -0.461 1.046 sum 2.274 4.754 -1.412 5.456 Atomic orbital electron populations 1.23297 0.76709 1.05212 1.02252 1.86188 1.23080 1.26524 1.89024 1.18667 0.89804 0.85735 1.02364 1.21024 1.00751 0.90255 1.04648 1.20218 0.94173 0.95297 1.02033 1.25093 1.00636 1.01303 0.92048 1.86484 1.36536 1.96893 1.16204 0.85161 0.76991 0.75178 0.81642 1.16942 1.20559 1.17516 1.21015 0.92896 0.98997 1.01319 1.21340 1.02168 0.89434 1.04875 1.18519 0.88212 0.86261 1.03081 1.86205 1.17834 1.29092 1.89461 1.22710 0.79690 0.93949 1.07602 1.20804 0.82179 0.91639 0.75356 1.90790 1.63614 1.39831 1.47771 1.43057 1.06009 1.08208 1.72476 1.18982 0.96150 0.87672 0.99386 1.21653 0.99570 0.93306 0.95007 1.28937 1.00584 1.08590 1.07404 0.77157 0.65384 0.62063 0.63784 1.26330 1.10479 1.09565 1.10833 1.26314 1.09103 1.07149 1.14539 1.26108 1.12651 1.09968 1.07178 1.23068 0.92761 0.98106 0.91966 1.67683 1.34548 1.01052 1.17468 1.22997 0.92440 0.95433 0.96806 0.91629 0.91600 0.87177 0.83548 0.85977 0.76181 0.83688 0.80861 0.84958 0.84886 0.72421 0.84984 0.92671 0.90156 0.90983 0.90991 0.90127 0.92440 0.90163 0.90107 0.90705 0.80586 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.03 9.81 113.37 1.11 1.14 16 2 O -0.33 -3.28 10.28 -79.65 -0.82 -4.10 16 3 C 0.08 0.55 6.70 22.57 0.15 0.70 16 4 C -0.15 -0.39 8.60 22.35 0.19 -0.20 16 5 C -0.12 0.05 5.39 -19.86 -0.11 -0.05 16 6 C -0.08 0.22 2.82 71.24 0.20 0.42 16 7 O -0.55 0.57 12.77 -148.98 -1.90 -1.34 16 8 Si 0.99 -3.89 25.06 68.60 1.72 -2.17 16 9 H -0.25 1.17 7.11 99.48 0.71 1.88 16 10 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 11 H -0.25 0.94 7.11 99.48 0.71 1.65 16 12 C -0.12 0.33 8.66 22.27 0.19 0.52 16 13 C -0.16 0.43 9.04 22.35 0.20 0.63 16 14 C 0.08 0.39 6.70 22.57 0.15 0.54 16 15 O -0.31 -2.18 9.46 -67.13 -0.63 -2.81 16 16 C 0.04 -0.15 5.22 71.23 0.37 0.23 16 17 C 0.51 1.37 7.67 87.66 0.67 2.04 16 18 O -0.54 -7.50 14.19 15.98 0.23 -7.27 16 19 N -0.65 1.86 5.35 -303.20 -1.62 0.23 16 20 C 0.07 0.24 6.31 38.24 0.24 0.48 16 21 C -0.07 -0.40 8.01 22.58 0.18 -0.22 16 22 C -0.41 -1.19 4.59 22.34 0.10 -1.09 16 23 Si 1.13 -2.94 12.39 68.60 0.85 -2.09 16 24 C -0.47 -0.34 8.65 113.37 0.98 0.64 16 25 C -0.46 0.01 8.58 113.37 0.97 0.98 16 26 C -0.45 1.97 8.54 113.37 0.97 2.94 16 27 C 0.10 0.35 10.45 84.68 0.89 1.23 16 28 N -0.50 -3.15 10.35 -195.32 -2.02 -5.17 16 29 C 0.08 0.21 11.12 84.86 0.94 1.16 16 30 H 0.07 -0.07 7.66 -2.39 -0.02 -0.09 16 31 H 0.07 -0.06 7.66 -2.39 -0.02 -0.08 16 32 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.15 0.10 6.30 -2.91 -0.02 0.08 16 34 H 0.12 -0.47 7.96 -2.39 -0.02 -0.49 16 35 H 0.39 -2.85 8.70 -74.06 -0.64 -3.49 16 36 H 0.15 -0.99 4.87 -2.91 -0.01 -1.01 16 37 H 0.17 -1.89 6.30 -2.91 -0.02 -1.91 16 38 H 0.13 -1.46 7.65 -2.39 -0.02 -1.48 16 39 H 0.13 -1.47 7.68 -2.38 -0.02 -1.49 16 40 H 0.44 -5.31 8.82 -92.71 -0.82 -6.13 16 41 H 0.13 1.07 6.04 -2.91 -0.02 1.05 16 42 H 0.05 0.23 7.96 -2.38 -0.02 0.21 16 43 H 0.08 -0.07 7.96 -2.39 -0.02 -0.09 16 44 H 0.07 0.02 7.96 -2.38 -0.02 0.01 16 45 H 0.07 -0.04 7.96 -2.38 -0.02 -0.05 16 46 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 47 H 0.06 0.17 7.78 -2.39 -0.02 0.15 16 48 H 0.08 -0.44 7.71 -2.39 -0.02 -0.46 16 49 H 0.08 -0.40 7.96 -2.38 -0.02 -0.42 16 50 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 51 H 0.18 -0.35 7.45 -2.91 -0.02 -0.37 16 52 H 0.18 -0.74 8.06 -2.91 -0.02 -0.76 16 Total: 0.00 -30.45 432.55 4.47 -25.97 By element: Atomic # 1 Polarization: -13.60 SS G_CDS: 0.26 Total: -13.34 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 8.42 Total: 12.09 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -3.65 Total: -4.94 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -3.13 Total: -15.52 kcal Atomic # 14 Polarization: -6.83 SS G_CDS: 2.57 Total: -4.26 kcal Total: -30.45 4.47 -25.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_60476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.037 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds