Wall clock time and date at job start Sun Mar 7 2021 12:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86292 * 109.47207 * 2 1 4 4 C 1.86297 * 109.47339 * 239.99846 * 2 1 3 5 5 C 1.86801 * 109.47098 * 119.99782 * 2 1 3 6 6 C 1.38505 * 120.38454 * 270.02367 * 5 2 1 7 7 C 1.39284 * 118.36260 * 179.97438 * 6 5 2 8 8 N 1.39952 * 120.48943 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99774 * 32.66037 * 8 7 6 10 10 O 1.21287 * 119.99873 * 5.26950 * 9 8 7 11 11 C 1.50694 * 120.00012 * 185.26609 * 9 8 7 12 12 N 1.46491 * 109.47513 * 180.02562 * 11 9 8 13 13 C 1.36832 * 125.06112 * 265.02573 * 12 11 9 14 14 C 1.34246 * 109.94127 * 179.97438 * 13 12 11 15 15 C 1.50697 * 126.49971 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47058 * 104.97882 * 15 14 13 17 17 Si 1.86296 * 109.47487 * 344.97811 * 15 14 13 18 18 H 1.48497 * 109.47359 * 59.99826 * 17 15 14 19 19 H 1.48497 * 109.47304 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46986 * 299.99917 * 17 15 14 21 21 C 1.46494 * 106.99643 * 0.02562 * 14 13 12 22 22 C 1.39587 * 134.03857 * 180.02562 * 21 14 13 23 23 C 1.36655 * 119.76530 * 179.97438 * 22 21 14 24 24 C 1.38789 * 120.52977 * 359.97438 * 23 22 21 25 25 C 1.37786 * 120.66529 * 0.02562 * 24 23 22 26 26 C 1.37693 * 125.06667 * 84.71570 * 12 11 9 27 27 C 1.38850 * 119.02273 * 0.02562 * 7 6 5 28 28 N 1.31817 * 120.66556 * 359.97438 * 27 7 6 29 29 C 1.31867 * 121.79370 * 0.02562 * 28 27 7 30 30 H 1.09009 * 109.46999 * 299.99842 * 1 2 3 31 31 H 1.08995 * 109.46953 * 59.99729 * 1 2 3 32 32 H 1.09006 * 109.47293 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47333 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47385 * 300.00006 * 3 2 1 35 35 H 1.09006 * 109.47516 * 60.00190 * 3 2 1 36 36 H 1.09006 * 109.46843 * 300.00171 * 4 2 1 37 37 H 1.08998 * 109.46822 * 59.99535 * 4 2 1 38 38 H 1.08990 * 109.47418 * 180.02562 * 4 2 1 39 39 H 1.08001 * 120.82111 * 359.95337 * 6 5 2 40 40 H 0.96994 * 119.99555 * 212.66639 * 8 7 6 41 41 H 1.09010 * 109.47242 * 300.00450 * 11 9 8 42 42 H 1.08996 * 109.47312 * 60.00198 * 11 9 8 43 43 H 1.08001 * 125.03430 * 359.96327 * 13 12 11 44 44 H 1.09002 * 109.46879 * 224.97425 * 15 14 13 45 45 H 0.96698 * 114.00260 * 299.99892 * 16 15 14 46 46 H 1.08001 * 120.11736 * 359.97438 * 22 21 14 47 47 H 1.08001 * 119.73812 * 180.02562 * 23 22 21 48 48 H 1.08002 * 119.67018 * 180.02562 * 24 23 22 49 49 H 1.08004 * 120.11337 * 179.97438 * 25 24 23 50 50 H 1.08004 * 119.66680 * 180.02562 * 27 7 6 51 51 H 1.08001 * 119.53822 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7187 -0.1761 2.6948 7 6 3.1822 -0.8749 3.8069 8 7 3.4329 -0.2073 5.0112 9 6 2.6839 0.8575 5.3600 10 8 1.7330 1.1791 4.6794 11 6 3.0279 1.6483 6.5958 12 7 2.0707 2.7457 6.7555 13 6 2.2624 4.0265 6.3137 14 6 1.1948 4.7808 6.6195 15 6 1.0118 6.2436 6.3070 16 8 0.0942 6.3875 5.2210 17 14 2.6532 6.9882 5.8358 18 1 3.1885 6.2898 4.6396 19 1 2.4729 8.4298 5.5284 20 1 3.6068 6.8387 6.9643 21 6 0.2416 3.9123 7.3145 22 6 -1.0248 4.1083 7.8679 23 6 -1.6735 3.0640 8.4645 24 6 -1.0836 1.8091 8.5243 25 6 0.1656 1.5934 7.9845 26 6 0.8416 2.6406 7.3672 27 6 3.3928 -2.2433 3.7030 28 7 3.1583 -2.8755 2.5703 29 6 2.7192 -2.2431 1.4997 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1207 2.2702 -0.8899 35 1 2.1207 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5210 37 1 2.1206 -0.3645 -2.4110 38 1 3.5739 -0.8786 -1.5208 39 1 2.5456 0.8889 2.7431 40 1 4.1458 -0.5110 5.5946 41 1 2.9822 0.9968 7.4686 42 1 4.0344 2.0550 6.4984 43 1 3.1423 4.3785 5.7959 44 1 0.6189 6.7563 7.1850 45 1 0.3799 5.9550 4.4047 46 1 -1.4902 5.0819 7.8247 47 1 -2.6535 3.2161 8.8922 48 1 -1.6090 0.9935 8.9988 49 1 0.6165 0.6134 8.0364 50 1 3.7517 -2.7955 4.5590 51 1 2.5395 -2.7972 0.5902 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915418_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:30:01 Heat of formation + Delta-G solvation = -1.199428 kcal Electronic energy + Delta-G solvation = -32859.676622 eV Core-core repulsion = 28655.242934 eV Total energy + Delta-G solvation = -4204.433688 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 383.158 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.63753 -41.73735 -40.17927 -38.05564 -37.60742 -36.28901 -34.21803 -33.02273 -31.81912 -30.91355 -30.18726 -29.56472 -28.94302 -28.46092 -28.42528 -25.95965 -24.78673 -24.14565 -23.56414 -22.58585 -21.74930 -20.67353 -19.34041 -18.63225 -18.31615 -17.92928 -17.63038 -17.25234 -17.06515 -16.41403 -16.22421 -16.08776 -15.75930 -15.48869 -15.06708 -14.97614 -14.75006 -14.67486 -14.53473 -14.50995 -14.27317 -14.12262 -13.98319 -13.87986 -13.75511 -13.51258 -13.40423 -13.30320 -13.26952 -13.10715 -12.64950 -12.51698 -12.35421 -12.14626 -12.07969 -11.96221 -11.88876 -11.65646 -11.34416 -11.22391 -10.97140 -10.50658 -10.41128 -10.25557 -10.16243 -9.40944 -9.08766 -8.60067 -0.07644 0.21247 0.25383 0.73127 1.18405 1.20112 1.26843 1.41129 1.51099 1.56849 1.63433 1.78487 1.90266 1.91628 1.93853 2.46908 2.86215 3.05004 3.22875 3.35450 3.56489 3.58100 3.67700 3.69062 3.78660 3.81896 4.02382 4.11329 4.22420 4.26872 4.29086 4.32379 4.54242 4.65926 4.66638 4.67735 4.69179 4.70327 4.75056 4.75927 4.77314 4.84708 4.94036 4.99020 4.99801 5.11816 5.20802 5.40537 5.49112 5.54683 5.59598 5.71198 5.74655 5.80647 5.84838 5.91459 6.18576 6.29636 6.70154 6.70993 6.97022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.068 2.932 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.407 4.407 6 C -0.045 4.045 7 C 0.081 3.919 8 N -0.668 5.668 9 C 0.490 3.510 10 O -0.493 6.493 11 C 0.095 3.905 12 N -0.467 5.467 13 C 0.057 3.943 14 C -0.192 4.192 15 C -0.043 4.043 16 O -0.539 6.539 17 Si 0.944 3.056 18 H -0.254 1.254 19 H -0.250 1.250 20 H -0.250 1.250 21 C -0.084 4.084 22 C -0.063 4.063 23 C -0.145 4.145 24 C -0.095 4.095 25 C -0.129 4.129 26 C 0.109 3.891 27 C 0.088 3.912 28 N -0.472 5.472 29 C 0.111 3.889 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.142 0.858 40 H 0.414 0.586 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.166 0.834 44 H 0.114 0.886 45 H 0.374 0.626 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.114 0.886 50 H 0.155 0.845 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -0.381 0.918 4.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.259 2.741 3 C -0.558 4.558 4 C -0.557 4.557 5 C -0.449 4.449 6 C -0.073 4.073 7 C -0.015 4.015 8 N -0.315 5.315 9 C 0.275 3.725 10 O -0.364 6.364 11 C -0.032 4.032 12 N -0.151 5.151 13 C -0.067 4.067 14 C -0.200 4.200 15 C -0.155 4.155 16 O -0.344 6.344 17 Si 0.766 3.234 18 H -0.178 1.178 19 H -0.173 1.173 20 H -0.173 1.173 21 C -0.088 4.088 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.114 4.114 25 C -0.150 4.150 26 C 0.005 3.995 27 C -0.072 4.072 28 N -0.181 5.181 29 C -0.046 4.046 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.160 0.840 40 H 0.251 0.749 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.183 0.817 44 H 0.132 0.868 45 H 0.221 0.779 46 H 0.143 0.857 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.132 0.868 50 H 0.173 0.827 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.895 -0.543 0.671 4.971 hybrid contribution 0.302 -0.150 0.319 0.464 sum 5.197 -0.693 0.991 5.336 Atomic orbital electron populations 1.26120 1.20186 1.04717 1.04732 0.78060 0.67084 0.66052 0.62906 1.26126 1.06268 1.18583 1.04800 1.26118 1.06490 1.08179 1.14929 1.28453 1.04606 1.00936 1.10909 1.21495 0.94626 1.00920 0.90279 1.18875 1.03286 0.92921 0.86403 1.43385 1.36280 1.30848 1.20984 1.21294 0.82737 0.80880 0.87627 1.90823 1.26290 1.66674 1.52657 1.21546 0.94408 0.89838 0.97395 1.43160 1.14545 1.07482 1.49926 1.21553 1.00228 0.83197 1.01748 1.20659 0.94985 0.96367 1.07969 1.24263 1.04560 0.93460 0.93171 1.86512 1.47938 1.78103 1.21836 0.85849 0.75585 0.81021 0.80970 1.17783 1.17287 1.17324 1.18913 0.95299 0.92010 1.02605 1.20327 0.92493 0.99339 0.96026 1.20689 1.00598 0.92948 1.02166 1.20840 0.94148 0.97408 0.99005 1.19953 0.96036 0.96575 1.02414 1.18169 0.85949 0.96116 0.99301 1.22611 0.98752 0.89145 0.96706 1.67677 1.11339 1.39644 0.99416 1.22683 0.93564 0.91987 0.96372 0.91035 0.90798 0.91086 0.91178 0.90644 0.91145 0.90925 0.90641 0.90965 0.84010 0.74925 0.85981 0.85500 0.81708 0.86797 0.77879 0.85701 0.85841 0.85699 0.86793 0.82749 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.20 8.65 101.05 0.87 1.07 16 2 Si 1.07 -2.09 12.39 -169.99 -2.11 -4.20 16 3 C -0.45 0.54 8.58 101.05 0.87 1.40 16 4 C -0.45 0.91 8.54 101.05 0.86 1.77 16 5 C -0.41 -0.20 4.59 -39.47 -0.18 -0.38 16 6 C -0.05 -0.07 8.01 -39.09 -0.31 -0.38 16 7 C 0.08 0.05 6.31 -83.53 -0.53 -0.48 16 8 N -0.67 1.56 5.35 -9.76 -0.05 1.51 16 9 C 0.49 -0.27 7.66 -10.99 -0.08 -0.36 16 10 O -0.49 -1.92 14.11 5.55 0.08 -1.84 16 11 C 0.09 -0.30 6.48 -5.20 -0.03 -0.34 16 12 N -0.47 -0.30 2.27 -115.71 -0.26 -0.56 16 13 C 0.06 0.03 9.89 -16.73 -0.17 -0.13 16 14 C -0.19 -0.36 5.58 -102.71 -0.57 -0.93 16 15 C -0.04 -0.02 3.06 36.00 0.11 0.09 16 16 O -0.54 -0.93 12.88 -35.23 -0.45 -1.39 16 17 Si 0.94 -0.59 26.08 -169.99 -4.43 -5.03 16 18 H -0.25 0.22 7.03 56.52 0.40 0.62 16 19 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 20 H -0.25 0.08 7.11 56.52 0.40 0.48 16 21 C -0.08 -0.30 6.35 -105.14 -0.67 -0.97 16 22 C -0.06 -0.19 10.05 -39.65 -0.40 -0.59 16 23 C -0.14 -0.32 9.97 -39.95 -0.40 -0.72 16 24 C -0.09 -0.18 10.01 -39.54 -0.40 -0.58 16 25 C -0.13 -0.28 10.00 -39.43 -0.39 -0.67 16 26 C 0.11 0.31 6.80 -83.99 -0.57 -0.26 16 27 C 0.09 0.08 11.12 -17.33 -0.19 -0.12 16 28 N -0.47 -1.29 10.35 -13.09 -0.14 -1.43 16 29 C 0.11 0.14 10.46 -17.52 -0.18 -0.04 16 30 H 0.07 0.05 7.96 -51.92 -0.41 -0.36 16 31 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 33 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.03 7.78 -51.93 -0.40 -0.44 16 36 H 0.07 -0.17 7.71 -51.93 -0.40 -0.57 16 37 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.14 0.25 6.04 -52.49 -0.32 -0.07 16 40 H 0.41 -2.55 8.82 -40.82 -0.36 -2.91 16 41 H 0.12 -0.67 8.14 -51.92 -0.42 -1.09 16 42 H 0.13 -0.83 8.12 -51.93 -0.42 -1.25 16 43 H 0.17 -0.35 6.29 -52.49 -0.33 -0.68 16 44 H 0.11 0.00 7.96 -51.93 -0.41 -0.41 16 45 H 0.37 -0.41 8.70 45.56 0.40 -0.01 16 46 H 0.13 0.25 8.06 -52.49 -0.42 -0.18 16 47 H 0.12 0.04 8.06 -52.49 -0.42 -0.39 16 48 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 49 H 0.11 0.03 8.06 -52.48 -0.42 -0.39 16 50 H 0.16 -0.29 8.06 -52.48 -0.42 -0.71 16 51 H 0.16 -0.17 7.45 -52.49 -0.39 -0.56 16 LS Contribution 429.83 15.07 6.48 6.48 Total: 0.00 -11.20 429.83 -10.13 -21.33 By element: Atomic # 1 Polarization: -5.39 SS G_CDS: -6.87 Total: -12.26 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.36 Total: -2.61 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: -0.45 Total: -0.48 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.38 Total: -3.23 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: -6.54 Total: -9.22 kcal Total LS contribution 6.48 Total: 6.48 kcal Total: -11.20 -10.13 -21.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.130 kcal (2) G-P(sol) polarization free energy of solvation -11.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds