Wall clock time and date at job start Sun Mar 7 2021 12:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86292 * 109.47207 * 2 1 4 4 C 1.86297 * 109.47339 * 239.99846 * 2 1 3 5 5 C 1.86801 * 109.47098 * 119.99782 * 2 1 3 6 6 C 1.38505 * 120.38454 * 270.02367 * 5 2 1 7 7 C 1.39284 * 118.36260 * 179.97438 * 6 5 2 8 8 N 1.39952 * 120.48943 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99774 * 32.66037 * 8 7 6 10 10 O 1.21287 * 119.99873 * 5.26950 * 9 8 7 11 11 C 1.50694 * 120.00012 * 185.26609 * 9 8 7 12 12 N 1.46491 * 109.47513 * 180.02562 * 11 9 8 13 13 C 1.36832 * 125.06112 * 265.02573 * 12 11 9 14 14 C 1.34246 * 109.94127 * 179.97438 * 13 12 11 15 15 C 1.50697 * 126.49971 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47058 * 104.97882 * 15 14 13 17 17 Si 1.86296 * 109.47487 * 344.97811 * 15 14 13 18 18 H 1.48497 * 109.47359 * 59.99826 * 17 15 14 19 19 H 1.48497 * 109.47304 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46986 * 299.99917 * 17 15 14 21 21 C 1.46494 * 106.99643 * 0.02562 * 14 13 12 22 22 C 1.39587 * 134.03857 * 180.02562 * 21 14 13 23 23 C 1.36655 * 119.76530 * 179.97438 * 22 21 14 24 24 C 1.38789 * 120.52977 * 359.97438 * 23 22 21 25 25 C 1.37786 * 120.66529 * 0.02562 * 24 23 22 26 26 C 1.37693 * 125.06667 * 84.71570 * 12 11 9 27 27 C 1.38850 * 119.02273 * 0.02562 * 7 6 5 28 28 N 1.31817 * 120.66556 * 359.97438 * 27 7 6 29 29 C 1.31867 * 121.79370 * 0.02562 * 28 27 7 30 30 H 1.09009 * 109.46999 * 299.99842 * 1 2 3 31 31 H 1.08995 * 109.46953 * 59.99729 * 1 2 3 32 32 H 1.09006 * 109.47293 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47333 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47385 * 300.00006 * 3 2 1 35 35 H 1.09006 * 109.47516 * 60.00190 * 3 2 1 36 36 H 1.09006 * 109.46843 * 300.00171 * 4 2 1 37 37 H 1.08998 * 109.46822 * 59.99535 * 4 2 1 38 38 H 1.08990 * 109.47418 * 180.02562 * 4 2 1 39 39 H 1.08001 * 120.82111 * 359.95337 * 6 5 2 40 40 H 0.96994 * 119.99555 * 212.66639 * 8 7 6 41 41 H 1.09010 * 109.47242 * 300.00450 * 11 9 8 42 42 H 1.08996 * 109.47312 * 60.00198 * 11 9 8 43 43 H 1.08001 * 125.03430 * 359.96327 * 13 12 11 44 44 H 1.09002 * 109.46879 * 224.97425 * 15 14 13 45 45 H 0.96698 * 114.00260 * 299.99892 * 16 15 14 46 46 H 1.08001 * 120.11736 * 359.97438 * 22 21 14 47 47 H 1.08001 * 119.73812 * 180.02562 * 23 22 21 48 48 H 1.08002 * 119.67018 * 180.02562 * 24 23 22 49 49 H 1.08004 * 120.11337 * 179.97438 * 25 24 23 50 50 H 1.08004 * 119.66680 * 180.02562 * 27 7 6 51 51 H 1.08001 * 119.53822 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4857 -0.8805 1.5253 6 6 2.7187 -0.1761 2.6948 7 6 3.1822 -0.8749 3.8069 8 7 3.4329 -0.2073 5.0112 9 6 2.6839 0.8575 5.3600 10 8 1.7330 1.1791 4.6794 11 6 3.0279 1.6483 6.5958 12 7 2.0707 2.7457 6.7555 13 6 2.2624 4.0265 6.3137 14 6 1.1948 4.7808 6.6195 15 6 1.0118 6.2436 6.3070 16 8 0.0942 6.3875 5.2210 17 14 2.6532 6.9882 5.8358 18 1 3.1885 6.2898 4.6396 19 1 2.4729 8.4298 5.5284 20 1 3.6068 6.8387 6.9643 21 6 0.2416 3.9123 7.3145 22 6 -1.0248 4.1083 7.8679 23 6 -1.6735 3.0640 8.4645 24 6 -1.0836 1.8091 8.5243 25 6 0.1656 1.5934 7.9845 26 6 0.8416 2.6406 7.3672 27 6 3.3928 -2.2433 3.7030 28 7 3.1583 -2.8755 2.5703 29 6 2.7192 -2.2431 1.4997 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1207 2.2702 -0.8899 35 1 2.1207 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5210 37 1 2.1206 -0.3645 -2.4110 38 1 3.5739 -0.8786 -1.5208 39 1 2.5456 0.8889 2.7431 40 1 4.1458 -0.5110 5.5946 41 1 2.9822 0.9968 7.4686 42 1 4.0344 2.0550 6.4984 43 1 3.1423 4.3785 5.7959 44 1 0.6189 6.7563 7.1850 45 1 0.3799 5.9550 4.4047 46 1 -1.4902 5.0819 7.8247 47 1 -2.6535 3.2161 8.8922 48 1 -1.6090 0.9935 8.9988 49 1 0.6165 0.6134 8.0364 50 1 3.7517 -2.7955 4.5590 51 1 2.5395 -2.7972 0.5902 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915418_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:30:00 Heat of formation + Delta-G solvation = 1.715963 kcal Electronic energy + Delta-G solvation = -32859.550201 eV Core-core repulsion = 28655.242934 eV Total energy + Delta-G solvation = -4204.307267 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 383.158 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.64272 -41.73041 -40.18985 -38.12807 -37.65737 -36.27784 -34.20491 -33.04668 -31.83965 -30.94073 -30.26388 -29.46581 -28.88578 -28.37547 -28.31659 -25.96830 -24.80080 -24.15874 -23.62815 -22.64858 -21.70163 -20.71436 -19.28763 -18.58265 -18.31908 -17.93839 -17.61004 -17.24782 -17.07487 -16.47524 -16.19871 -16.11961 -15.76794 -15.48886 -15.05388 -14.95123 -14.81442 -14.74545 -14.54121 -14.52905 -14.20957 -14.08737 -13.86731 -13.83380 -13.72083 -13.44116 -13.27667 -13.21585 -13.13694 -13.01593 -12.72410 -12.60288 -12.34727 -12.16332 -12.08244 -11.95171 -11.90590 -11.69392 -11.33522 -11.18700 -10.84697 -10.60298 -10.42123 -10.28618 -10.18313 -9.38838 -9.19009 -8.66528 -0.07747 0.11455 0.20777 0.61045 1.21350 1.28088 1.32723 1.47357 1.56175 1.63759 1.67249 1.92583 1.95131 2.02032 2.03231 2.55984 2.85124 2.93139 3.38997 3.59776 3.61610 3.63915 3.70684 3.79682 3.81527 4.01041 4.07752 4.11153 4.20277 4.25343 4.28133 4.34680 4.50014 4.58556 4.70163 4.74013 4.74969 4.77042 4.79160 4.79904 4.87806 4.88021 4.88616 5.00359 5.04734 5.10605 5.12576 5.48992 5.50613 5.57822 5.64671 5.66126 5.70741 5.72669 5.73305 6.07135 6.18824 6.28570 6.75395 6.86014 6.94596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.127 2.873 3 C -0.461 4.461 4 C -0.453 4.453 5 C -0.415 4.415 6 C -0.065 4.065 7 C 0.077 3.923 8 N -0.651 5.651 9 C 0.491 3.509 10 O -0.543 6.543 11 C 0.092 3.908 12 N -0.467 5.467 13 C 0.063 3.937 14 C -0.214 4.214 15 C -0.053 4.053 16 O -0.560 6.560 17 Si 0.989 3.011 18 H -0.245 1.245 19 H -0.274 1.274 20 H -0.249 1.249 21 C -0.113 4.113 22 C -0.085 4.085 23 C -0.154 4.154 24 C -0.107 4.107 25 C -0.136 4.136 26 C 0.092 3.908 27 C 0.079 3.921 28 N -0.500 5.500 29 C 0.095 3.905 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.434 0.566 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.194 0.806 44 H 0.109 0.891 45 H 0.384 0.616 46 H 0.123 0.877 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.131 0.869 50 H 0.179 0.821 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -1.189 0.892 6.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.314 2.686 3 C -0.568 4.568 4 C -0.561 4.561 5 C -0.455 4.455 6 C -0.093 4.093 7 C -0.020 4.020 8 N -0.299 5.299 9 C 0.278 3.722 10 O -0.419 6.419 11 C -0.033 4.033 12 N -0.150 5.150 13 C -0.062 4.062 14 C -0.222 4.222 15 C -0.163 4.163 16 O -0.366 6.366 17 Si 0.811 3.189 18 H -0.168 1.168 19 H -0.199 1.199 20 H -0.172 1.172 21 C -0.117 4.117 22 C -0.103 4.103 23 C -0.173 4.173 24 C -0.126 4.126 25 C -0.157 4.157 26 C -0.013 4.013 27 C -0.081 4.081 28 N -0.209 5.209 29 C -0.061 4.061 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.153 0.847 40 H 0.274 0.726 41 H 0.168 0.832 42 H 0.186 0.814 43 H 0.210 0.790 44 H 0.127 0.873 45 H 0.232 0.768 46 H 0.141 0.859 47 H 0.154 0.846 48 H 0.161 0.839 49 H 0.149 0.851 50 H 0.196 0.804 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.887 -1.394 0.686 7.060 hybrid contribution -0.352 0.092 0.346 0.502 sum 6.535 -1.303 1.031 6.743 Atomic orbital electron populations 1.26345 1.22215 1.04473 1.04199 0.77184 0.64877 0.64819 0.61727 1.26256 1.06553 1.19390 1.04563 1.26135 1.06696 1.08547 1.14745 1.28917 1.03966 1.00923 1.11741 1.21625 0.95483 1.00890 0.91256 1.18969 1.02777 0.93085 0.87144 1.43267 1.36366 1.30046 1.20263 1.21783 0.81889 0.80762 0.87808 1.90816 1.28566 1.68041 1.54445 1.21964 0.95200 0.89236 0.96883 1.43379 1.14339 1.08330 1.48988 1.21998 1.00515 0.83109 1.00596 1.20842 0.95408 0.96976 1.08927 1.24520 1.05656 0.93231 0.92845 1.86469 1.49061 1.78397 1.22678 0.85197 0.73869 0.78940 0.80888 1.16778 1.19885 1.17245 1.19316 0.95872 0.93267 1.03274 1.20482 0.93080 0.99708 0.97065 1.20927 1.01202 0.93088 1.02065 1.21132 0.94468 0.97783 0.99230 1.20231 0.96173 0.97220 1.02034 1.18381 0.87070 0.96003 0.99829 1.22986 0.98639 0.89440 0.97008 1.67674 1.12243 1.40645 1.00335 1.23044 0.93740 0.92494 0.96856 0.92685 0.90189 0.91189 0.90879 0.90123 0.92132 0.90359 0.90139 0.90699 0.84710 0.72580 0.83206 0.81401 0.78970 0.87291 0.76781 0.85899 0.84565 0.83885 0.85076 0.80439 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -0.03 8.65 113.37 0.98 0.95 16 2 Si 1.13 -4.13 12.39 68.60 0.85 -3.28 16 3 C -0.46 0.94 8.58 113.37 0.97 1.91 16 4 C -0.45 2.18 8.54 113.37 0.97 3.15 16 5 C -0.42 -0.65 4.59 22.34 0.10 -0.55 16 6 C -0.06 -0.24 8.01 22.59 0.18 -0.06 16 7 C 0.08 0.08 6.31 38.24 0.24 0.32 16 8 N -0.65 3.80 5.35 -303.19 -1.62 2.17 16 9 C 0.49 -0.97 7.66 87.65 0.67 -0.30 16 10 O -0.54 -4.58 14.11 -3.05 -0.04 -4.63 16 11 C 0.09 -0.78 6.48 85.63 0.56 -0.23 16 12 N -0.47 -0.25 2.27 -520.00 -1.18 -1.43 16 13 C 0.06 0.03 9.89 83.00 0.82 0.85 16 14 C -0.21 -1.00 5.58 -18.62 -0.10 -1.10 16 15 C -0.05 -0.13 3.06 71.24 0.22 0.09 16 16 O -0.56 -2.90 12.88 -148.98 -1.92 -4.82 16 17 Si 0.99 -1.49 26.08 68.60 1.79 0.30 16 18 H -0.24 0.79 7.03 99.48 0.70 1.49 16 19 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 20 H -0.25 0.43 7.11 99.48 0.71 1.14 16 21 C -0.11 -0.99 6.35 -20.20 -0.13 -1.12 16 22 C -0.08 -0.71 10.05 22.22 0.22 -0.49 16 23 C -0.15 -0.92 9.97 22.03 0.22 -0.70 16 24 C -0.11 -0.49 10.01 22.29 0.22 -0.26 16 25 C -0.14 -0.63 10.00 22.37 0.22 -0.41 16 26 C 0.09 0.57 6.80 39.03 0.27 0.84 16 27 C 0.08 0.12 11.12 84.84 0.94 1.06 16 28 N -0.50 -2.83 10.35 -195.31 -2.02 -4.85 16 29 C 0.10 0.28 10.46 84.70 0.89 1.16 16 30 H 0.05 0.19 7.96 -2.38 -0.02 0.17 16 31 H 0.08 -0.12 7.96 -2.39 -0.02 -0.13 16 32 H 0.07 0.01 7.96 -2.38 -0.02 -0.01 16 33 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 34 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.06 0.01 7.78 -2.38 -0.02 -0.01 16 36 H 0.08 -0.44 7.71 -2.38 -0.02 -0.46 16 37 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.14 0.65 6.04 -2.91 -0.02 0.63 16 40 H 0.43 -6.26 8.82 -92.71 -0.82 -7.08 16 41 H 0.15 -2.08 8.14 -2.38 -0.02 -2.10 16 42 H 0.17 -2.81 8.12 -2.39 -0.02 -2.83 16 43 H 0.19 -1.18 6.29 -2.91 -0.02 -1.20 16 44 H 0.11 0.24 7.96 -2.39 -0.02 0.22 16 45 H 0.38 -0.23 8.70 -74.06 -0.64 -0.88 16 46 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.14 0.27 8.06 -2.91 -0.02 0.24 16 48 H 0.14 -0.03 8.06 -2.91 -0.02 -0.06 16 49 H 0.13 0.00 8.06 -2.91 -0.02 -0.03 16 50 H 0.18 -0.85 8.06 -2.91 -0.02 -0.87 16 51 H 0.17 -0.37 7.45 -2.91 -0.02 -0.39 16 Total: 0.00 -28.52 429.83 4.56 -23.96 By element: Atomic # 1 Polarization: -12.81 SS G_CDS: 0.25 Total: -12.56 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 8.46 Total: 5.13 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -4.83 Total: -4.11 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -1.96 Total: -9.44 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.64 Total: -2.97 kcal Total: -28.52 4.56 -23.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915418_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.672 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds