Wall clock time and date at job start Sun Mar 7 2021 19:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86305 * 111.63837 * 2 1 4 4 C 1.90178 * 111.97270 * 126.44601 * 2 1 3 5 5 C 1.55210 * 98.86245 * 88.86218 * 4 2 1 6 6 N 1.45020 * 116.00931 * 20.24792 * 5 4 2 7 7 C 1.34782 * 120.86057 * 180.84399 * 6 5 4 8 8 O 1.21570 * 120.00007 * 187.09166 * 7 6 5 9 9 C 1.47724 * 119.99756 * 7.09205 * 7 6 5 10 10 C 1.39622 * 120.12179 * 349.48063 * 9 7 6 11 11 C 1.37859 * 119.88250 * 179.97438 * 10 9 7 12 12 C 1.38628 * 120.11786 * 0.25281 * 11 10 9 13 13 F 1.35108 * 119.88277 * 179.74826 * 12 11 10 14 14 C 1.38681 * 120.23779 * 359.48622 * 12 11 10 15 15 C 1.50701 * 119.93975 * 180.25899 * 14 12 11 16 16 O 1.42898 * 109.47416 * 75.25417 * 15 14 12 17 17 Si 1.86297 * 109.47226 * 315.25288 * 15 14 12 18 18 H 1.48500 * 109.47100 * 60.00239 * 17 15 14 19 19 H 1.48502 * 109.47515 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47442 * 300.00042 * 17 15 14 21 21 C 1.37814 * 120.11885 * 0.51458 * 14 12 11 22 22 C 1.48279 * 118.28014 * 1.11441 * 6 5 4 23 23 H 1.09002 * 109.46503 * 293.55198 * 1 2 3 24 24 H 1.08998 * 109.46873 * 53.55070 * 1 2 3 25 25 H 1.08995 * 109.47103 * 173.55424 * 1 2 3 26 26 H 1.09006 * 109.47195 * 186.45095 * 3 2 1 27 27 H 1.08997 * 109.46823 * 306.44569 * 3 2 1 28 28 H 1.08997 * 109.47354 * 66.44966 * 3 2 1 29 29 H 1.08999 * 111.51306 * 331.44603 * 4 2 1 30 30 H 1.09000 * 111.56480 * 206.29391 * 4 2 1 31 31 H 1.09000 * 108.15344 * 258.59355 * 5 4 2 32 32 H 1.08997 * 108.12560 * 141.87935 * 5 4 2 33 33 H 1.08003 * 120.05664 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.94023 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47005 * 195.25349 * 15 14 12 36 36 H 0.96702 * 114.00017 * 300.00544 * 16 15 14 37 37 H 1.07997 * 120.05776 * 179.72396 * 21 14 12 38 38 H 1.08999 * 111.29740 * 95.92140 * 22 6 5 39 39 H 1.08998 * 111.30167 * 220.53908 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5500 1.7318 0.0000 4 6 2.5746 -1.0477 1.4187 5 6 2.6358 -2.4196 0.6954 6 7 2.6236 -2.3754 -0.7541 7 6 2.6563 -3.5101 -1.4807 8 8 2.7755 -3.4548 -2.6893 9 6 2.5472 -4.8210 -0.8084 10 6 2.6309 -4.9041 0.5828 11 6 2.5280 -6.1299 1.2051 12 6 2.3469 -7.2794 0.4518 13 9 2.2517 -8.4789 1.0663 14 6 2.2576 -7.2020 -0.9300 15 6 2.0549 -8.4553 -1.7420 16 8 0.6987 -8.8884 -1.6191 17 14 3.1925 -9.7914 -1.1165 18 1 2.8898 -10.0715 0.3101 19 1 2.9924 -11.0266 -1.9162 20 1 4.6019 -9.3414 -1.2442 21 6 2.3593 -5.9817 -1.5623 22 6 2.5804 -1.0493 -1.4162 23 1 -0.3632 0.4107 0.9421 24 1 -0.3633 0.6105 -0.8266 25 1 -0.3633 -1.0211 -0.1154 26 1 3.6333 1.6929 -0.1155 27 1 2.1165 2.2945 -0.8267 28 1 2.3024 2.2209 0.9420 29 1 1.8982 -1.0760 2.2729 30 1 3.5673 -0.7052 1.7108 31 1 1.7842 -3.0152 1.0242 32 1 3.5457 -2.9295 1.0119 33 1 2.7761 -4.0096 1.1704 34 1 2.5930 -6.1953 2.2812 35 1 2.2771 -8.2497 -2.7891 36 1 0.4307 -9.0896 -0.7119 37 1 2.2941 -5.9231 -2.6387 38 1 3.5792 -0.7130 -1.6943 39 1 1.9138 -1.0589 -2.2785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915426_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:26:38 Heat of formation + Delta-G solvation = -71.750796 kcal Electronic energy + Delta-G solvation = -22176.488160 eV Core-core repulsion = 18738.136541 eV Total energy + Delta-G solvation = -3438.351619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.41806 -41.66502 -39.57963 -37.72475 -37.33151 -33.06513 -32.03930 -31.49729 -29.45129 -28.71943 -28.02540 -26.86671 -24.79876 -24.03380 -22.76148 -20.94691 -19.17136 -18.62482 -17.88029 -17.67033 -17.26009 -16.93231 -16.78268 -16.00071 -15.54799 -15.29478 -15.13773 -15.04971 -14.83011 -14.41213 -14.36666 -14.19787 -14.03719 -13.96920 -13.84445 -13.55554 -13.48339 -13.30142 -13.07964 -12.80046 -12.53800 -12.16865 -11.97793 -11.28242 -11.17918 -11.14677 -10.85883 -10.69292 -10.59280 -10.13519 -9.83757 -9.58665 -0.47479 -0.00698 1.10266 1.13148 1.49149 1.51117 1.53221 1.57911 1.70446 1.85950 1.98350 2.19449 2.56604 2.98227 3.27949 3.35234 3.49703 3.56118 3.57729 3.83744 3.95914 4.11717 4.26849 4.31861 4.50628 4.53048 4.54015 4.54424 4.57878 4.59884 4.72642 4.75064 4.83624 4.87730 4.91575 5.00360 5.08347 5.27964 5.33826 5.36727 5.59668 6.25470 6.44648 7.12744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.985 3.015 3 C -0.440 4.440 4 C -0.406 4.406 5 C 0.084 3.916 6 N -0.595 5.595 7 C 0.560 3.440 8 O -0.528 6.528 9 C -0.143 4.143 10 C -0.114 4.114 11 C -0.155 4.155 12 C 0.114 3.886 13 F -0.125 7.125 14 C -0.159 4.159 15 C -0.080 4.080 16 O -0.532 6.532 17 Si 0.937 3.063 18 H -0.229 1.229 19 H -0.252 1.252 20 H -0.251 1.251 21 C -0.011 4.011 22 C -0.174 4.174 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.189 0.811 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.376 0.624 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 4.249 5.608 7.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.181 2.819 3 C -0.550 4.550 4 C -0.492 4.492 5 C -0.038 4.038 6 N -0.329 5.329 7 C 0.350 3.650 8 O -0.405 6.405 9 C -0.146 4.146 10 C -0.131 4.131 11 C -0.173 4.173 12 C 0.094 3.906 13 F -0.103 7.103 14 C -0.160 4.160 15 C -0.190 4.190 16 O -0.337 6.337 17 Si 0.757 3.243 18 H -0.151 1.151 19 H -0.176 1.176 20 H -0.175 1.175 21 C -0.030 4.030 22 C -0.341 4.341 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.205 0.795 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.223 0.777 37 H 0.166 0.834 38 H 0.096 0.904 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.361 3.680 4.616 5.915 hybrid contribution -0.180 -0.146 0.456 0.511 sum 0.180 3.534 5.072 6.185 Atomic orbital electron populations 1.25973 1.18998 1.05036 1.05065 0.80599 0.68225 0.67288 0.65818 1.25947 1.06977 1.16970 1.05064 1.26680 1.08205 1.04286 1.09982 1.21982 1.02154 0.99290 0.80355 1.47876 1.73423 1.05902 1.05695 1.18140 0.76828 0.83387 0.86667 1.90802 1.49085 1.86866 1.13783 1.20002 1.06747 0.93901 0.93977 1.23412 0.94847 1.00239 0.94575 1.21217 1.03842 0.91077 1.01183 1.18009 1.00727 0.81398 0.90462 1.91589 1.93226 1.42183 1.83314 1.20303 1.05732 0.97685 0.92276 1.24981 0.91505 0.98068 1.04416 1.86562 1.26065 1.88119 1.32967 0.86134 0.78064 0.78466 0.81616 1.15109 1.17604 1.17471 1.21044 0.91863 0.89011 1.01103 1.27130 1.06892 0.90587 1.09529 0.90527 0.90625 0.90877 0.90651 0.90671 0.90530 0.88160 0.88717 0.89868 0.90136 0.79490 0.83632 0.85834 0.77737 0.83364 0.90397 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.43 8.65 101.05 0.87 2.30 16 2 Si 0.98 -4.43 13.66 -169.99 -2.32 -6.75 16 3 C -0.44 1.68 8.65 101.05 0.87 2.56 16 4 C -0.41 1.95 6.06 38.33 0.23 2.18 16 5 C 0.08 -0.25 4.02 -3.66 -0.01 -0.27 16 6 N -0.60 -0.16 3.08 -136.42 -0.42 -0.58 16 7 C 0.56 1.84 7.65 -12.38 -0.09 1.75 16 8 O -0.53 -3.72 16.39 5.30 0.09 -3.63 16 9 C -0.14 -0.23 5.86 -104.97 -0.61 -0.85 16 10 C -0.11 0.11 8.00 -39.20 -0.31 -0.21 16 11 C -0.15 0.14 10.01 -39.58 -0.40 -0.26 16 12 C 0.11 0.08 6.63 -39.27 -0.26 -0.18 16 13 F -0.12 -0.12 12.58 2.25 0.03 -0.10 16 14 C -0.16 -0.19 4.78 -104.61 -0.50 -0.69 16 15 C -0.08 -0.06 2.81 36.01 0.10 0.04 16 16 O -0.53 -0.80 12.88 -35.23 -0.45 -1.26 16 17 Si 0.94 0.78 26.08 -169.99 -4.43 -3.65 16 18 H -0.23 -0.25 5.27 56.52 0.30 0.05 16 19 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 20 H -0.25 -0.45 7.11 56.52 0.40 -0.04 16 21 C -0.01 -0.02 9.20 -39.20 -0.36 -0.38 16 22 C -0.17 0.12 5.72 60.83 0.35 0.47 16 23 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 24 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 25 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 26 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 27 H 0.07 -0.26 7.96 -51.93 -0.41 -0.68 16 28 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 29 H 0.10 -0.59 8.06 -51.93 -0.42 -1.01 16 30 H 0.09 -0.48 8.06 -51.93 -0.42 -0.90 16 31 H 0.08 -0.34 6.11 -51.93 -0.32 -0.65 16 32 H 0.08 -0.30 6.33 -51.93 -0.33 -0.63 16 33 H 0.19 -0.68 2.58 -84.19 -0.22 -0.89 16 34 H 0.15 -0.46 8.06 -52.49 -0.42 -0.88 16 35 H 0.12 -0.04 7.77 -51.93 -0.40 -0.44 16 36 H 0.38 -0.51 8.44 45.56 0.38 -0.13 16 37 H 0.15 0.30 7.62 -52.49 -0.40 -0.10 16 38 H 0.08 -0.04 8.06 -51.93 -0.42 -0.46 16 39 H 0.09 0.04 7.93 -51.93 -0.41 -0.37 16 LS Contribution 318.98 15.07 4.81 4.81 Total: 0.00 -7.70 318.98 -7.58 -15.28 By element: Atomic # 1 Polarization: -5.82 SS G_CDS: -4.75 Total: -10.58 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.13 Total: 6.46 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -0.42 Total: -0.58 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.37 Total: -4.89 kcal Atomic # 9 Polarization: -0.12 SS G_CDS: 0.03 Total: -0.10 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: -6.75 Total: -10.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -7.70 -7.58 -15.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.467 kcal (2) G-P(sol) polarization free energy of solvation -7.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds