Wall clock time and date at job start Sun Mar 7 2021 19:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86305 * 111.63837 * 2 1 4 4 C 1.90178 * 111.97270 * 126.44601 * 2 1 3 5 5 C 1.55210 * 98.86245 * 88.86218 * 4 2 1 6 6 N 1.45020 * 116.00931 * 20.24792 * 5 4 2 7 7 C 1.34782 * 120.86057 * 180.84399 * 6 5 4 8 8 O 1.21570 * 120.00007 * 187.09166 * 7 6 5 9 9 C 1.47724 * 119.99756 * 7.09205 * 7 6 5 10 10 C 1.39622 * 120.12179 * 349.48063 * 9 7 6 11 11 C 1.37859 * 119.88250 * 179.97438 * 10 9 7 12 12 C 1.38628 * 120.11786 * 0.25281 * 11 10 9 13 13 F 1.35108 * 119.88277 * 179.74826 * 12 11 10 14 14 C 1.38681 * 120.23779 * 359.48622 * 12 11 10 15 15 C 1.50701 * 119.93975 * 180.25899 * 14 12 11 16 16 O 1.42898 * 109.47416 * 75.25417 * 15 14 12 17 17 Si 1.86297 * 109.47226 * 315.25288 * 15 14 12 18 18 H 1.48500 * 109.47100 * 60.00239 * 17 15 14 19 19 H 1.48502 * 109.47515 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47442 * 300.00042 * 17 15 14 21 21 C 1.37814 * 120.11885 * 0.51458 * 14 12 11 22 22 C 1.48279 * 118.28014 * 1.11441 * 6 5 4 23 23 H 1.09002 * 109.46503 * 293.55198 * 1 2 3 24 24 H 1.08998 * 109.46873 * 53.55070 * 1 2 3 25 25 H 1.08995 * 109.47103 * 173.55424 * 1 2 3 26 26 H 1.09006 * 109.47195 * 186.45095 * 3 2 1 27 27 H 1.08997 * 109.46823 * 306.44569 * 3 2 1 28 28 H 1.08997 * 109.47354 * 66.44966 * 3 2 1 29 29 H 1.08999 * 111.51306 * 331.44603 * 4 2 1 30 30 H 1.09000 * 111.56480 * 206.29391 * 4 2 1 31 31 H 1.09000 * 108.15344 * 258.59355 * 5 4 2 32 32 H 1.08997 * 108.12560 * 141.87935 * 5 4 2 33 33 H 1.08003 * 120.05664 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.94023 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47005 * 195.25349 * 15 14 12 36 36 H 0.96702 * 114.00017 * 300.00544 * 16 15 14 37 37 H 1.07997 * 120.05776 * 179.72396 * 21 14 12 38 38 H 1.08999 * 111.29740 * 95.92140 * 22 6 5 39 39 H 1.08998 * 111.30167 * 220.53908 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5500 1.7318 0.0000 4 6 2.5746 -1.0477 1.4187 5 6 2.6358 -2.4196 0.6954 6 7 2.6236 -2.3754 -0.7541 7 6 2.6563 -3.5101 -1.4807 8 8 2.7755 -3.4548 -2.6893 9 6 2.5472 -4.8210 -0.8084 10 6 2.6309 -4.9041 0.5828 11 6 2.5280 -6.1299 1.2051 12 6 2.3469 -7.2794 0.4518 13 9 2.2517 -8.4789 1.0663 14 6 2.2576 -7.2020 -0.9300 15 6 2.0549 -8.4553 -1.7420 16 8 0.6987 -8.8884 -1.6191 17 14 3.1925 -9.7914 -1.1165 18 1 2.8898 -10.0715 0.3101 19 1 2.9924 -11.0266 -1.9162 20 1 4.6019 -9.3414 -1.2442 21 6 2.3593 -5.9817 -1.5623 22 6 2.5804 -1.0493 -1.4162 23 1 -0.3632 0.4107 0.9421 24 1 -0.3633 0.6105 -0.8266 25 1 -0.3633 -1.0211 -0.1154 26 1 3.6333 1.6929 -0.1155 27 1 2.1165 2.2945 -0.8267 28 1 2.3024 2.2209 0.9420 29 1 1.8982 -1.0760 2.2729 30 1 3.5673 -0.7052 1.7108 31 1 1.7842 -3.0152 1.0242 32 1 3.5457 -2.9295 1.0119 33 1 2.7761 -4.0096 1.1704 34 1 2.5930 -6.1953 2.2812 35 1 2.2771 -8.2497 -2.7891 36 1 0.4307 -9.0896 -0.7119 37 1 2.2941 -5.9231 -2.6387 38 1 3.5792 -0.7130 -1.6943 39 1 1.9138 -1.0589 -2.2785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:26:38 Heat of formation + Delta-G solvation = -67.610653 kcal Electronic energy + Delta-G solvation = -22176.308630 eV Core-core repulsion = 18738.136541 eV Total energy + Delta-G solvation = -3438.172089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.46017 -41.73191 -39.65661 -37.82977 -37.37568 -33.08534 -32.07854 -31.31084 -29.17038 -28.41684 -27.98656 -26.88381 -24.73002 -24.01106 -22.71295 -20.97816 -19.21335 -18.66215 -17.93998 -17.74307 -17.23763 -16.96786 -16.87798 -16.04745 -15.54190 -15.26913 -15.11767 -15.02334 -14.86889 -14.46314 -14.28115 -14.04993 -13.84433 -13.71324 -13.66977 -13.39907 -13.29468 -13.16868 -13.06958 -12.57351 -12.50064 -12.25655 -11.92798 -11.36144 -11.18064 -10.87142 -10.86228 -10.68194 -10.37776 -10.16606 -9.89866 -9.57943 -0.53381 -0.02146 1.04264 1.38795 1.40182 1.43348 1.55868 1.75917 1.85420 1.89199 2.04057 2.45061 2.49742 2.95928 3.26713 3.34412 3.54689 3.57457 3.78913 3.98746 4.10560 4.16928 4.32073 4.52930 4.58673 4.64701 4.72383 4.77995 4.80442 4.85023 4.86833 4.87482 4.93627 4.98682 5.04003 5.14642 5.23164 5.50999 5.58339 5.60496 5.66415 6.20879 6.50192 6.98236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.070 2.930 3 C -0.451 4.451 4 C -0.396 4.396 5 C 0.064 3.936 6 N -0.589 5.589 7 C 0.547 3.453 8 O -0.585 6.585 9 C -0.157 4.157 10 C -0.101 4.101 11 C -0.146 4.146 12 C 0.106 3.894 13 F -0.126 7.126 14 C -0.165 4.165 15 C -0.083 4.083 16 O -0.547 6.547 17 Si 0.970 3.030 18 H -0.226 1.226 19 H -0.270 1.270 20 H -0.266 1.266 21 C -0.029 4.029 22 C -0.212 4.212 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.219 0.781 34 H 0.178 0.822 35 H 0.126 0.874 36 H 0.387 0.613 37 H 0.134 0.866 38 H 0.069 0.931 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 5.094 8.847 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.260 2.740 3 C -0.560 4.560 4 C -0.482 4.482 5 C -0.056 4.056 6 N -0.321 5.321 7 C 0.338 3.662 8 O -0.467 6.467 9 C -0.160 4.160 10 C -0.118 4.118 11 C -0.164 4.164 12 C 0.086 3.914 13 F -0.105 7.105 14 C -0.166 4.166 15 C -0.192 4.192 16 O -0.353 6.353 17 Si 0.792 3.208 18 H -0.149 1.149 19 H -0.195 1.195 20 H -0.190 1.190 21 C -0.048 4.048 22 C -0.375 4.375 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.235 0.765 34 H 0.195 0.805 35 H 0.143 0.857 36 H 0.236 0.764 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.317 4.531 7.865 9.082 hybrid contribution -0.178 -0.368 -0.593 0.721 sum 0.139 4.163 7.271 8.380 Atomic orbital electron populations 1.26179 1.20592 1.04359 1.05437 0.79374 0.66033 0.65572 0.63064 1.26076 1.06997 1.17559 1.05395 1.26699 1.09471 1.02104 1.09976 1.22335 1.03606 1.01439 0.78233 1.48085 1.71417 1.05297 1.07288 1.18571 0.76501 0.84805 0.86330 1.90756 1.52114 1.87745 1.16118 1.20030 1.07887 0.92833 0.95293 1.23775 0.93182 1.01503 0.93306 1.21597 1.02104 0.90105 1.02639 1.18185 1.00954 0.81962 0.90291 1.91579 1.93272 1.42421 1.83197 1.20291 1.06170 0.97280 0.92883 1.25037 0.91265 0.98147 1.04759 1.86529 1.26432 1.88178 1.34199 0.85688 0.76842 0.77174 0.81066 1.14896 1.19540 1.19016 1.21019 0.93176 0.89867 1.00752 1.27790 1.06530 0.91669 1.11473 0.89311 0.91351 0.91860 0.90736 0.91223 0.89520 0.85647 0.87483 0.88145 0.88638 0.76539 0.80454 0.85658 0.76434 0.84837 0.91246 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.23 8.65 113.37 0.98 4.21 16 2 Si 1.07 -10.66 13.66 68.60 0.94 -9.73 16 3 C -0.45 3.95 8.65 113.37 0.98 4.93 16 4 C -0.40 5.11 6.06 72.74 0.44 5.55 16 5 C 0.06 -0.51 4.02 87.41 0.35 -0.16 16 6 N -0.59 -0.81 3.08 -703.78 -2.16 -2.97 16 7 C 0.55 4.86 7.65 86.75 0.66 5.52 16 8 O -0.59 -10.68 16.39 -3.94 -0.06 -10.74 16 9 C -0.16 -0.69 5.86 -20.09 -0.12 -0.81 16 10 C -0.10 0.33 8.00 22.51 0.18 0.51 16 11 C -0.15 0.55 10.01 22.27 0.22 0.77 16 12 C 0.11 0.09 6.63 22.47 0.15 0.24 16 13 F -0.13 -0.15 12.58 44.97 0.57 0.42 16 14 C -0.16 -0.58 4.78 -19.86 -0.09 -0.68 16 15 C -0.08 -0.24 2.81 71.24 0.20 -0.04 16 16 O -0.55 -2.20 12.88 -148.98 -1.92 -4.12 16 17 Si 0.97 2.43 26.08 68.60 1.79 4.22 16 18 H -0.23 -0.46 5.27 99.48 0.52 0.07 16 19 H -0.27 -1.42 7.11 99.48 0.71 -0.71 16 20 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 21 C -0.03 -0.18 9.20 22.52 0.21 0.03 16 22 C -0.21 -0.09 5.72 127.42 0.73 0.64 16 23 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 24 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 25 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 26 H 0.07 -0.60 7.96 -2.38 -0.02 -0.62 16 27 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 28 H 0.09 -0.88 7.96 -2.39 -0.02 -0.90 16 29 H 0.13 -2.10 8.06 -2.39 -0.02 -2.12 16 30 H 0.11 -1.52 8.06 -2.39 -0.02 -1.54 16 31 H 0.10 -1.10 6.11 -2.39 -0.01 -1.11 16 32 H 0.10 -0.99 6.33 -2.39 -0.02 -1.01 16 33 H 0.22 -2.20 2.58 -32.69 -0.08 -2.28 16 34 H 0.18 -1.80 8.06 -2.91 -0.02 -1.82 16 35 H 0.13 0.22 7.77 -2.39 -0.02 0.20 16 36 H 0.39 -0.85 8.44 -74.06 -0.63 -1.47 16 37 H 0.13 1.08 7.62 -2.91 -0.02 1.06 16 38 H 0.07 0.09 8.06 -2.39 -0.02 0.07 16 39 H 0.07 0.30 7.93 -2.39 -0.02 0.28 16 Total: 0.00 -21.68 318.98 4.98 -16.70 By element: Atomic # 1 Polarization: -15.46 SS G_CDS: 0.94 Total: -14.51 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 4.89 Total: 20.73 kcal Atomic # 7 Polarization: -0.81 SS G_CDS: -2.16 Total: -2.97 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.98 Total: -14.87 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.57 Total: 0.42 kcal Atomic # 14 Polarization: -8.23 SS G_CDS: 2.73 Total: -5.51 kcal Total: -21.68 4.98 -16.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.907 kcal (2) G-P(sol) polarization free energy of solvation -21.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds