Wall clock time and date at job start Sun Mar 7 2021 19:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86305 * 111.60379 * 2 1 4 4 C 1.90262 * 111.85045 * 233.83456 * 2 1 3 5 5 C 1.56107 * 97.33471 * 272.41541 * 4 2 1 6 6 N 1.45785 * 112.27019 * 321.91505 * 5 4 2 7 7 C 1.34782 * 121.16749 * 212.76452 * 6 5 4 8 8 O 1.21279 * 119.99884 * 179.97438 * 7 6 5 9 9 C 1.50704 * 119.99891 * 359.97393 * 7 6 5 10 10 N 1.46497 * 109.46976 * 180.02562 * 9 7 6 11 11 C 1.35042 * 125.93164 * 125.00064 * 10 9 7 12 12 C 1.35078 * 107.97847 * 179.97438 * 11 10 9 13 13 C 1.50708 * 126.07486 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47116 * 105.15383 * 13 12 11 15 15 Si 1.86299 * 109.46874 * 345.15620 * 13 12 11 16 16 H 1.48493 * 109.47251 * 60.00237 * 15 13 12 17 17 H 1.48502 * 109.46845 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46972 * 299.99824 * 15 13 12 19 19 C 1.40842 * 107.85332 * 359.97438 * 12 11 10 20 20 C 1.48421 * 126.04024 * 180.02562 * 19 12 11 21 21 C 1.39324 * 120.11873 * 317.19392 * 20 19 12 22 22 C 1.38026 * 119.87550 * 179.67848 * 21 20 19 23 23 C 1.38317 * 120.11685 * 0.61901 * 22 21 20 24 24 C 1.38319 * 120.24830 * 359.67711 * 23 22 21 25 25 C 1.38022 * 120.11340 * 0.02562 * 24 23 22 26 26 N 1.31630 * 107.92357 * 359.75871 * 19 12 11 27 27 C 1.47938 * 117.65963 * 32.73770 * 6 5 4 28 28 H 1.09004 * 109.47091 * 293.83635 * 1 2 3 29 29 H 1.09000 * 109.46971 * 53.83922 * 1 2 3 30 30 H 1.09000 * 109.47172 * 173.84189 * 1 2 3 31 31 H 1.09007 * 109.46566 * 186.16033 * 3 2 1 32 32 H 1.08993 * 109.46766 * 306.16216 * 3 2 1 33 33 H 1.08997 * 109.47211 * 66.16287 * 3 2 1 34 34 H 1.09003 * 111.79811 * 155.37325 * 4 2 1 35 35 H 1.09000 * 111.85978 * 29.48037 * 4 2 1 36 36 H 1.08997 * 108.93041 * 201.17496 * 5 4 2 37 37 H 1.08999 * 108.82161 * 82.57697 * 5 4 2 38 38 H 1.08999 * 109.46861 * 300.00443 * 9 7 6 39 39 H 1.08997 * 109.47184 * 59.99965 * 9 7 6 40 40 H 1.07999 * 126.00697 * 359.93816 * 11 10 9 41 41 H 1.08996 * 109.46739 * 225.15658 * 13 12 11 42 42 H 0.96703 * 113.99524 * 179.97438 * 14 13 12 43 43 H 1.07998 * 120.05746 * 359.97438 * 21 20 19 44 44 H 1.07997 * 119.94043 * 180.32137 * 22 21 20 45 45 H 1.08009 * 119.87534 * 179.69944 * 23 22 21 46 46 H 1.08000 * 119.94407 * 180.02562 * 24 23 22 47 47 H 1.08008 * 120.05670 * 180.02562 * 25 24 23 48 48 H 1.09002 * 110.97672 * 111.05875 * 27 6 5 49 49 H 1.08999 * 110.97710 * 234.83393 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5490 1.7322 0.0000 4 6 2.5711 -1.0421 -1.4257 5 6 2.5848 -2.4145 -0.6817 6 7 2.9640 -2.2796 0.7194 7 6 3.6509 -3.2510 1.3528 8 8 3.9558 -3.1164 2.5189 9 6 4.0399 -4.5044 0.6120 10 7 4.7723 -5.3971 1.5135 11 6 4.4585 -6.6825 1.7834 12 6 5.3717 -7.1601 2.6567 13 6 5.4065 -8.5530 3.2312 14 8 6.4507 -9.3007 2.6046 15 14 3.7718 -9.3922 2.9245 16 1 3.5196 -9.4658 1.4630 17 1 3.8059 -10.7644 3.4912 18 1 2.6866 -8.6151 3.5757 19 6 6.2855 -6.1252 2.9350 20 6 7.4539 -6.2135 3.8460 21 6 7.3326 -6.8511 5.0788 22 6 8.4242 -6.9362 5.9192 23 6 9.6334 -6.3786 5.5449 24 6 9.7578 -5.7390 4.3248 25 6 8.6743 -5.6536 3.4741 26 7 5.9236 -5.0674 2.2401 27 6 2.5689 -1.0388 1.4215 28 1 -0.3633 0.4153 0.9400 29 1 -0.3633 0.6064 -0.8297 30 1 -0.3633 -1.0217 -0.1102 31 1 3.6328 1.6937 -0.1103 32 1 2.1189 2.2932 -0.8296 33 1 2.2966 2.2229 0.9400 34 1 3.5757 -0.7213 -1.7014 35 1 1.9048 -1.0559 -2.2882 36 1 3.2929 -3.0784 -1.1775 37 1 1.5892 -2.8548 -0.7379 38 1 3.1421 -5.0077 0.2531 39 1 4.6736 -4.2436 -0.2356 40 1 3.6239 -7.2319 1.3734 41 1 5.5916 -8.4989 4.3039 42 1 6.5318 -10.2089 2.9266 43 1 6.3875 -7.2822 5.3742 44 1 8.3328 -7.4347 6.8728 45 1 10.4838 -6.4432 6.2077 46 1 10.7044 -5.3058 4.0372 47 1 8.7726 -5.1543 2.5214 48 1 1.8059 -1.2417 2.1730 49 1 3.4349 -0.5509 1.8688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915426_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:26:48 Heat of formation + Delta-G solvation = 16.220601 kcal Electronic energy + Delta-G solvation = -29566.009157 eV Core-core repulsion = 25618.783140 eV Total energy + Delta-G solvation = -3947.226018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.34501 -40.69032 -39.57719 -37.58456 -37.08277 -34.70424 -32.28442 -31.83189 -31.33577 -31.22878 -29.58633 -29.17935 -28.72173 -27.01059 -25.66242 -24.09158 -23.60447 -23.21556 -21.52159 -20.93992 -20.12541 -18.54783 -18.29075 -18.08162 -17.52350 -17.09354 -16.59607 -16.27052 -15.82351 -15.70570 -15.46728 -15.20553 -14.97193 -14.92816 -14.52261 -14.34720 -14.21067 -14.17971 -14.12034 -14.07035 -13.81499 -13.73437 -13.58182 -13.48842 -13.38272 -13.27568 -13.16480 -12.86227 -12.59698 -12.28159 -12.12775 -11.94864 -11.75767 -11.41200 -11.24690 -11.15970 -10.90742 -10.72822 -10.39490 -10.07434 -9.71244 -9.64796 -9.58491 -9.10586 0.34828 0.69399 0.90282 1.14570 1.19086 1.30463 1.45103 1.51163 1.51851 1.55201 1.66092 1.91104 1.93048 1.96516 2.20246 3.10510 3.22044 3.45684 3.60672 3.67139 3.71874 3.84171 3.89073 4.01256 4.09344 4.24809 4.25631 4.33756 4.39389 4.44658 4.49640 4.50646 4.54523 4.55925 4.60863 4.69817 4.72147 4.74227 4.90555 4.91946 4.98044 4.99450 5.17621 5.27114 5.30683 5.33803 5.34653 5.48706 5.77215 5.79415 5.82791 5.91415 6.22978 6.24242 6.75413 6.80017 7.12906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 0.986 3.014 3 C -0.441 4.441 4 C -0.404 4.404 5 C 0.094 3.906 6 N -0.600 5.600 7 C 0.499 3.501 8 O -0.502 6.502 9 C 0.116 3.884 10 N -0.358 5.358 11 C 0.059 3.941 12 C -0.206 4.206 13 C -0.041 4.041 14 O -0.542 6.542 15 Si 0.936 3.064 16 H -0.249 1.249 17 H -0.251 1.251 18 H -0.249 1.249 19 C 0.132 3.868 20 C -0.003 4.003 21 C -0.096 4.096 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.091 4.091 26 N -0.248 5.248 27 C -0.173 4.173 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.175 0.825 41 H 0.073 0.927 42 H 0.375 0.625 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 0.197 -4.330 6.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.182 2.818 3 C -0.550 4.550 4 C -0.490 4.490 5 C -0.028 4.028 6 N -0.336 5.336 7 C 0.284 3.716 8 O -0.375 6.375 9 C -0.009 4.009 10 N -0.139 5.139 11 C -0.086 4.086 12 C -0.217 4.217 13 C -0.152 4.152 14 O -0.347 6.347 15 Si 0.758 3.242 16 H -0.172 1.172 17 H -0.175 1.175 18 H -0.173 1.173 19 C -0.034 4.034 20 C -0.005 4.005 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.138 4.138 25 C -0.110 4.110 26 N -0.068 5.068 27 C -0.341 4.341 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.192 0.808 41 H 0.090 0.910 42 H 0.222 0.778 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.094 0.906 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.689 1.748 -4.550 6.763 hybrid contribution 0.072 -1.252 0.465 1.337 sum -4.617 0.497 -4.085 6.184 Atomic orbital electron populations 1.25986 1.18963 1.04950 1.05108 0.80540 0.67942 0.67460 0.65851 1.25964 1.06977 1.17089 1.05016 1.26876 1.07829 1.04710 1.09632 1.21660 1.01209 0.99256 0.80724 1.48042 1.56216 1.18365 1.11021 1.20497 0.78643 0.84638 0.87814 1.90813 1.51948 1.78711 1.15992 1.21633 0.97722 0.90107 0.91463 1.47827 1.21667 1.08557 1.35894 1.22176 1.01180 0.86135 0.99072 1.19277 0.99756 0.95971 1.06700 1.24009 1.01470 0.91512 0.98254 1.86563 1.54638 1.27845 1.65681 0.85962 0.76438 0.80139 0.81625 1.17199 1.17504 1.17269 1.20582 0.95241 0.90814 0.96803 1.17699 0.90515 0.99497 0.92811 1.21118 0.98991 0.98489 0.92924 1.21057 0.92840 1.00245 0.99669 1.21241 0.97734 0.97757 0.96572 1.21095 0.98605 0.99711 0.94414 1.21180 0.91943 0.98087 0.99826 1.77795 0.98823 1.20946 1.09213 1.26952 1.05431 0.92945 1.08729 0.90656 0.90527 0.90878 0.90713 0.90564 0.90723 0.89155 0.88236 0.90238 0.91148 0.85611 0.86453 0.80814 0.90956 0.77788 0.85745 0.85662 0.85904 0.85754 0.85900 0.90640 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.57 8.65 101.05 0.87 2.45 16 2 Si 0.99 -4.10 13.58 -169.99 -2.31 -6.41 16 3 C -0.44 1.32 8.65 101.05 0.87 2.20 16 4 C -0.40 1.72 6.19 38.82 0.24 1.96 16 5 C 0.09 -0.32 5.69 -2.76 -0.02 -0.33 16 6 N -0.60 -0.11 3.24 -109.98 -0.36 -0.47 16 7 C 0.50 1.59 7.75 -10.98 -0.09 1.50 16 8 O -0.50 -4.20 15.79 5.56 0.09 -4.11 16 9 C 0.12 0.02 5.54 -5.19 -0.03 -0.01 16 10 N -0.36 -1.43 3.39 -62.59 -0.21 -1.65 16 11 C 0.06 0.16 9.96 -17.26 -0.17 -0.01 16 12 C -0.21 -0.84 5.39 -104.76 -0.56 -1.41 16 13 C -0.04 -0.06 2.50 36.01 0.09 0.03 16 14 O -0.54 -0.97 12.86 -35.23 -0.45 -1.42 16 15 Si 0.94 -0.06 26.06 -169.99 -4.43 -4.49 16 16 H -0.25 -0.08 7.03 56.52 0.40 0.32 16 17 H -0.25 0.03 7.11 56.52 0.40 0.43 16 18 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 19 C 0.13 0.81 6.67 -82.77 -0.55 0.26 16 20 C 0.00 -0.02 5.74 -104.89 -0.60 -0.62 16 21 C -0.10 -0.34 8.89 -39.26 -0.35 -0.68 16 22 C -0.12 -0.27 10.03 -39.63 -0.40 -0.67 16 23 C -0.11 -0.25 10.04 -39.52 -0.40 -0.65 16 24 C -0.12 -0.36 10.03 -39.63 -0.40 -0.76 16 25 C -0.09 -0.43 9.78 -39.26 -0.38 -0.81 16 26 N -0.25 -1.76 11.69 33.43 0.39 -1.37 16 27 C -0.17 0.02 5.54 60.64 0.34 0.36 16 28 H 0.07 -0.23 7.96 -51.93 -0.41 -0.65 16 29 H 0.08 -0.29 7.96 -51.93 -0.41 -0.71 16 30 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 31 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 33 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 34 H 0.09 -0.34 8.07 -51.93 -0.42 -0.76 16 35 H 0.10 -0.54 8.07 -51.93 -0.42 -0.96 16 36 H 0.08 -0.37 6.40 -51.93 -0.33 -0.70 16 37 H 0.07 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.13 -0.49 8.06 -51.93 -0.42 -0.90 16 39 H 0.12 -0.22 7.46 -51.93 -0.39 -0.61 16 40 H 0.17 -0.14 6.35 -52.49 -0.33 -0.47 16 41 H 0.07 0.02 5.56 -51.93 -0.29 -0.27 16 42 H 0.38 -1.04 8.74 45.56 0.40 -0.64 16 43 H 0.12 0.23 6.21 -52.49 -0.33 -0.09 16 44 H 0.13 -0.01 8.06 -52.49 -0.42 -0.44 16 45 H 0.12 0.01 8.06 -52.48 -0.42 -0.42 16 46 H 0.12 0.12 8.06 -52.49 -0.42 -0.31 16 47 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 48 H 0.08 0.03 8.04 -51.93 -0.42 -0.38 16 49 H 0.08 0.11 8.04 -51.93 -0.42 -0.31 16 LS Contribution 404.06 15.07 6.09 6.09 Total: 0.00 -12.36 404.06 -9.48 -21.84 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -6.76 Total: -10.84 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.53 Total: 2.82 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: -0.18 Total: -3.48 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.37 Total: -5.53 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: -6.74 Total: -10.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -12.36 -9.48 -21.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.060 kcal (2) G-P(sol) polarization free energy of solvation -12.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds