Wall clock time and date at job start Sun Mar 7 2021 19:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86305 * 111.60379 * 2 1 4 4 C 1.90262 * 111.85045 * 233.83456 * 2 1 3 5 5 C 1.56107 * 97.33471 * 272.41541 * 4 2 1 6 6 N 1.45785 * 112.27019 * 321.91505 * 5 4 2 7 7 C 1.34782 * 121.16749 * 212.76452 * 6 5 4 8 8 O 1.21279 * 119.99884 * 179.97438 * 7 6 5 9 9 C 1.50704 * 119.99891 * 359.97393 * 7 6 5 10 10 N 1.46497 * 109.46976 * 180.02562 * 9 7 6 11 11 C 1.35042 * 125.93164 * 125.00064 * 10 9 7 12 12 C 1.35078 * 107.97847 * 179.97438 * 11 10 9 13 13 C 1.50708 * 126.07486 * 179.97438 * 12 11 10 14 14 O 1.42901 * 109.47116 * 105.15383 * 13 12 11 15 15 Si 1.86299 * 109.46874 * 345.15620 * 13 12 11 16 16 H 1.48493 * 109.47251 * 60.00237 * 15 13 12 17 17 H 1.48502 * 109.46845 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46972 * 299.99824 * 15 13 12 19 19 C 1.40842 * 107.85332 * 359.97438 * 12 11 10 20 20 C 1.48421 * 126.04024 * 180.02562 * 19 12 11 21 21 C 1.39324 * 120.11873 * 317.19392 * 20 19 12 22 22 C 1.38026 * 119.87550 * 179.67848 * 21 20 19 23 23 C 1.38317 * 120.11685 * 0.61901 * 22 21 20 24 24 C 1.38319 * 120.24830 * 359.67711 * 23 22 21 25 25 C 1.38022 * 120.11340 * 0.02562 * 24 23 22 26 26 N 1.31630 * 107.92357 * 359.75871 * 19 12 11 27 27 C 1.47938 * 117.65963 * 32.73770 * 6 5 4 28 28 H 1.09004 * 109.47091 * 293.83635 * 1 2 3 29 29 H 1.09000 * 109.46971 * 53.83922 * 1 2 3 30 30 H 1.09000 * 109.47172 * 173.84189 * 1 2 3 31 31 H 1.09007 * 109.46566 * 186.16033 * 3 2 1 32 32 H 1.08993 * 109.46766 * 306.16216 * 3 2 1 33 33 H 1.08997 * 109.47211 * 66.16287 * 3 2 1 34 34 H 1.09003 * 111.79811 * 155.37325 * 4 2 1 35 35 H 1.09000 * 111.85978 * 29.48037 * 4 2 1 36 36 H 1.08997 * 108.93041 * 201.17496 * 5 4 2 37 37 H 1.08999 * 108.82161 * 82.57697 * 5 4 2 38 38 H 1.08999 * 109.46861 * 300.00443 * 9 7 6 39 39 H 1.08997 * 109.47184 * 59.99965 * 9 7 6 40 40 H 1.07999 * 126.00697 * 359.93816 * 11 10 9 41 41 H 1.08996 * 109.46739 * 225.15658 * 13 12 11 42 42 H 0.96703 * 113.99524 * 179.97438 * 14 13 12 43 43 H 1.07998 * 120.05746 * 359.97438 * 21 20 19 44 44 H 1.07997 * 119.94043 * 180.32137 * 22 21 20 45 45 H 1.08009 * 119.87534 * 179.69944 * 23 22 21 46 46 H 1.08000 * 119.94407 * 180.02562 * 24 23 22 47 47 H 1.08008 * 120.05670 * 180.02562 * 25 24 23 48 48 H 1.09002 * 110.97672 * 111.05875 * 27 6 5 49 49 H 1.08999 * 110.97710 * 234.83393 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5490 1.7322 0.0000 4 6 2.5711 -1.0421 -1.4257 5 6 2.5848 -2.4145 -0.6817 6 7 2.9640 -2.2796 0.7194 7 6 3.6509 -3.2510 1.3528 8 8 3.9558 -3.1164 2.5189 9 6 4.0399 -4.5044 0.6120 10 7 4.7723 -5.3971 1.5135 11 6 4.4585 -6.6825 1.7834 12 6 5.3717 -7.1601 2.6567 13 6 5.4065 -8.5530 3.2312 14 8 6.4507 -9.3007 2.6046 15 14 3.7718 -9.3922 2.9245 16 1 3.5196 -9.4658 1.4630 17 1 3.8059 -10.7644 3.4912 18 1 2.6866 -8.6151 3.5757 19 6 6.2855 -6.1252 2.9350 20 6 7.4539 -6.2135 3.8460 21 6 7.3326 -6.8511 5.0788 22 6 8.4242 -6.9362 5.9192 23 6 9.6334 -6.3786 5.5449 24 6 9.7578 -5.7390 4.3248 25 6 8.6743 -5.6536 3.4741 26 7 5.9236 -5.0674 2.2401 27 6 2.5689 -1.0388 1.4215 28 1 -0.3633 0.4153 0.9400 29 1 -0.3633 0.6064 -0.8297 30 1 -0.3633 -1.0217 -0.1102 31 1 3.6328 1.6937 -0.1103 32 1 2.1189 2.2932 -0.8296 33 1 2.2966 2.2229 0.9400 34 1 3.5757 -0.7213 -1.7014 35 1 1.9048 -1.0559 -2.2882 36 1 3.2929 -3.0784 -1.1775 37 1 1.5892 -2.8548 -0.7379 38 1 3.1421 -5.0077 0.2531 39 1 4.6736 -4.2436 -0.2356 40 1 3.6239 -7.2319 1.3734 41 1 5.5916 -8.4989 4.3039 42 1 6.5318 -10.2089 2.9266 43 1 6.3875 -7.2822 5.3742 44 1 8.3328 -7.4347 6.8728 45 1 10.4838 -6.4432 6.2077 46 1 10.7044 -5.3058 4.0372 47 1 8.7726 -5.1543 2.5214 48 1 1.8059 -1.2417 2.1730 49 1 3.4349 -0.5509 1.8688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 19:26:47 Heat of formation + Delta-G solvation = 17.022236 kcal Electronic energy + Delta-G solvation = -29565.974396 eV Core-core repulsion = 25618.783140 eV Total energy + Delta-G solvation = -3947.191256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.158 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.55142 -40.83996 -39.78640 -37.65193 -37.16570 -34.88099 -32.47018 -32.02984 -31.53577 -31.05485 -29.58366 -29.06087 -28.44274 -27.03756 -25.79285 -24.12804 -23.61740 -23.39708 -21.71331 -21.12628 -20.19402 -18.65107 -18.36384 -18.19294 -17.64124 -17.15115 -16.73307 -16.36204 -15.98747 -15.80811 -15.57838 -15.23683 -15.03231 -14.98473 -14.47331 -14.45833 -14.32103 -14.25905 -13.95887 -13.92090 -13.84501 -13.62874 -13.53152 -13.42570 -13.32266 -13.13364 -13.01982 -12.68518 -12.55838 -12.31697 -12.24291 -12.10051 -11.88332 -11.56594 -11.39095 -10.95199 -10.89632 -10.58767 -10.42761 -10.13765 -9.88098 -9.82791 -9.75421 -9.33181 0.09421 0.45574 0.72958 1.16013 1.24254 1.36190 1.44189 1.49451 1.52565 1.67746 1.76967 1.93223 1.94694 2.00784 2.42698 2.87482 3.18324 3.39723 3.56872 3.77729 3.81595 3.87025 3.94069 3.96386 4.05193 4.12691 4.24694 4.29894 4.33478 4.50416 4.55064 4.57696 4.67411 4.72643 4.75268 4.77474 4.79047 4.83122 4.85200 4.90986 4.96211 5.06425 5.10314 5.25950 5.31045 5.46065 5.54811 5.55176 5.56297 5.59003 5.62604 5.80951 6.02932 6.21052 6.52329 6.92857 7.00369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.071 2.929 3 C -0.459 4.459 4 C -0.400 4.400 5 C 0.078 3.922 6 N -0.595 5.595 7 C 0.487 3.513 8 O -0.571 6.571 9 C 0.110 3.890 10 N -0.362 5.362 11 C 0.061 3.939 12 C -0.227 4.227 13 C -0.051 4.051 14 O -0.562 6.562 15 Si 0.982 3.018 16 H -0.248 1.248 17 H -0.248 1.248 18 H -0.263 1.263 19 C 0.111 3.889 20 C -0.027 4.027 21 C -0.106 4.106 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.114 4.114 26 N -0.295 5.295 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.140 0.860 40 H 0.210 0.790 41 H 0.077 0.923 42 H 0.393 0.607 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.111 0.889 48 H 0.060 0.940 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.642 -0.966 -6.057 8.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.261 2.739 3 C -0.567 4.567 4 C -0.487 4.487 5 C -0.043 4.043 6 N -0.329 5.329 7 C 0.275 3.725 8 O -0.449 6.449 9 C -0.013 4.013 10 N -0.144 5.144 11 C -0.084 4.084 12 C -0.238 4.238 13 C -0.161 4.161 14 O -0.371 6.371 15 Si 0.803 3.197 16 H -0.172 1.172 17 H -0.171 1.171 18 H -0.187 1.187 19 C -0.055 4.055 20 C -0.029 4.029 21 C -0.125 4.125 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.133 4.133 26 N -0.116 5.116 27 C -0.371 4.371 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.190 0.810 39 H 0.157 0.843 40 H 0.227 0.773 41 H 0.095 0.905 42 H 0.242 0.758 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.167 0.833 46 H 0.159 0.841 47 H 0.129 0.871 48 H 0.078 0.922 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.054 0.584 -6.280 8.743 hybrid contribution 0.516 -0.811 1.041 1.417 sum -5.538 -0.228 -5.239 7.627 Atomic orbital electron populations 1.26063 1.19056 1.05387 1.05198 0.79343 0.66736 0.64953 0.62895 1.26186 1.06728 1.18739 1.05063 1.26900 1.08253 1.03562 1.09985 1.22052 1.03131 1.00590 0.78513 1.48272 1.54612 1.17462 1.12504 1.21144 0.78164 0.85935 0.87303 1.90775 1.54944 1.80258 1.18966 1.22080 0.99617 0.88879 0.90771 1.48121 1.21037 1.09438 1.35757 1.22759 1.01507 0.85817 0.98281 1.19730 0.99755 0.96969 1.07374 1.24284 1.02873 0.90599 0.98322 1.86511 1.55117 1.29290 1.66137 0.85307 0.73917 0.79314 0.81139 1.17174 1.17142 1.18750 1.20934 0.95991 0.91455 0.97083 1.17981 0.90699 1.00425 0.93749 1.21329 1.00053 0.98535 0.92592 1.21417 0.92345 0.99666 1.00323 1.21595 0.98634 0.96905 0.96443 1.21355 0.98729 0.99682 0.94598 1.21254 0.92829 0.99123 1.00122 1.77687 1.00851 1.22243 1.10842 1.27573 1.04196 0.94236 1.11121 0.91342 0.89479 0.90471 0.91514 0.89577 0.91408 0.89370 0.85735 0.88346 0.88605 0.80964 0.84290 0.77312 0.90549 0.75759 0.84792 0.83011 0.83309 0.84052 0.87070 0.92176 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 3.75 8.65 113.37 0.98 4.73 16 2 Si 1.07 -9.21 13.58 68.60 0.93 -8.28 16 3 C -0.46 2.56 8.65 113.37 0.98 3.54 16 4 C -0.40 4.24 6.19 73.06 0.45 4.69 16 5 C 0.08 -0.66 5.69 87.59 0.50 -0.16 16 6 N -0.59 -0.81 3.24 -620.26 -2.01 -2.81 16 7 C 0.49 4.05 7.75 87.66 0.68 4.73 16 8 O -0.57 -11.92 15.79 -3.03 -0.05 -11.96 16 9 C 0.11 0.05 5.54 85.63 0.47 0.53 16 10 N -0.36 -3.40 3.39 -351.92 -1.19 -4.60 16 11 C 0.06 0.37 9.96 83.47 0.83 1.20 16 12 C -0.23 -2.21 5.39 -19.95 -0.11 -2.31 16 13 C -0.05 -0.18 2.50 71.24 0.18 0.00 16 14 O -0.56 -2.36 12.86 -148.98 -1.92 -4.27 16 15 Si 0.98 -0.93 26.06 68.60 1.79 0.85 16 16 H -0.25 0.28 7.03 99.48 0.70 0.98 16 17 H -0.25 0.42 7.11 99.48 0.71 1.12 16 18 H -0.26 -0.30 7.11 99.48 0.71 0.40 16 19 C 0.11 1.70 6.67 42.53 0.28 1.98 16 20 C -0.03 -0.36 5.74 -20.04 -0.12 -0.48 16 21 C -0.11 -0.92 8.89 22.48 0.20 -0.72 16 22 C -0.12 -0.57 10.03 22.24 0.22 -0.34 16 23 C -0.12 -0.54 10.04 22.31 0.22 -0.31 16 24 C -0.13 -0.93 10.03 22.24 0.22 -0.71 16 25 C -0.11 -1.43 9.78 22.48 0.22 -1.21 16 26 N -0.29 -5.16 11.69 -48.15 -0.56 -5.73 16 27 C -0.21 -0.46 5.54 127.49 0.71 0.25 16 28 H 0.07 -0.44 7.96 -2.38 -0.02 -0.46 16 29 H 0.09 -0.85 7.96 -2.39 -0.02 -0.87 16 30 H 0.08 -0.66 7.96 -2.39 -0.02 -0.68 16 31 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 32 H 0.09 -0.63 7.96 -2.39 -0.02 -0.65 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.09 -0.82 8.07 -2.39 -0.02 -0.84 16 35 H 0.12 -1.83 8.07 -2.39 -0.02 -1.85 16 36 H 0.10 -1.16 6.40 -2.39 -0.02 -1.18 16 37 H 0.10 -1.21 8.14 -2.39 -0.02 -1.23 16 38 H 0.17 -1.70 8.06 -2.39 -0.02 -1.72 16 39 H 0.14 -0.60 7.46 -2.39 -0.02 -0.62 16 40 H 0.21 -0.60 6.35 -2.91 -0.02 -0.62 16 41 H 0.08 0.12 5.56 -2.39 -0.01 0.10 16 42 H 0.39 -2.12 8.74 -74.06 -0.65 -2.77 16 43 H 0.13 0.73 6.21 -2.91 -0.02 0.72 16 44 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 45 H 0.15 -0.16 8.06 -2.91 -0.02 -0.19 16 46 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.11 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.06 0.26 8.04 -2.39 -0.02 0.24 16 49 H 0.05 0.39 8.04 -2.39 -0.02 0.37 16 Total: 0.00 -35.06 404.06 4.99 -30.08 By element: Atomic # 1 Polarization: -9.74 SS G_CDS: 1.06 Total: -8.69 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.93 Total: 15.41 kcal Atomic # 7 Polarization: -9.37 SS G_CDS: -3.76 Total: -13.14 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -1.96 Total: -16.24 kcal Atomic # 14 Polarization: -10.15 SS G_CDS: 2.72 Total: -7.43 kcal Total: -35.06 4.99 -30.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.102 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds