Wall clock time and date at job start Sun Mar 7 2021 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86305 * 111.63658 * 2 1 4 4 C 1.90119 * 111.99375 * 233.45366 * 2 1 3 5 5 C 1.55210 * 98.88653 * 271.16901 * 4 2 1 6 6 N 1.45024 * 115.98063 * 339.71602 * 5 4 2 7 7 C 1.34769 * 120.86183 * 179.19898 * 6 5 4 8 8 O 1.21279 * 120.00147 * 179.97438 * 7 6 5 9 9 C 1.50702 * 119.99886 * 359.97438 * 7 6 5 10 10 O 1.42905 * 109.47244 * 180.02562 * 9 7 6 11 11 C 1.35899 * 117.00143 * 179.97438 * 10 9 7 12 12 C 1.38707 * 120.05511 * 359.97438 * 11 10 9 13 13 C 1.38173 * 119.94301 * 180.02562 * 12 11 10 14 14 C 1.38243 * 120.05533 * 0.02562 * 13 12 11 15 15 C 1.38289 * 120.11241 * 0.02562 * 14 13 12 16 16 C 1.38123 * 120.05413 * 359.67672 * 15 14 13 17 17 C 1.50700 * 120.02920 * 180.32194 * 16 15 14 18 18 O 1.42899 * 109.46739 * 105.27736 * 17 16 15 19 19 Si 1.86301 * 109.47069 * 345.28186 * 17 16 15 20 20 H 1.48491 * 109.47361 * 59.99593 * 19 17 16 21 21 H 1.48500 * 109.47209 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46722 * 299.99616 * 19 17 16 23 23 C 1.48279 * 118.27649 * 359.17759 * 6 5 4 24 24 H 1.09002 * 109.47089 * 293.55205 * 1 2 3 25 25 H 1.09001 * 109.47273 * 53.55056 * 1 2 3 26 26 H 1.08998 * 109.47278 * 173.55044 * 1 2 3 27 27 H 1.09004 * 109.47152 * 186.44316 * 3 2 1 28 28 H 1.08995 * 109.47147 * 306.44860 * 3 2 1 29 29 H 1.09000 * 109.46870 * 66.44809 * 3 2 1 30 30 H 1.09003 * 111.51844 * 153.74089 * 4 2 1 31 31 H 1.09004 * 111.49026 * 28.58592 * 4 2 1 32 32 H 1.09002 * 108.15421 * 218.08057 * 5 4 2 33 33 H 1.08999 * 108.15288 * 101.34778 * 5 4 2 34 34 H 1.09000 * 109.47362 * 299.99474 * 9 7 6 35 35 H 1.08997 * 109.47484 * 59.99670 * 9 7 6 36 36 H 1.08001 * 120.03062 * 0.02562 * 12 11 10 37 37 H 1.07997 * 119.96774 * 179.97438 * 13 12 11 38 38 H 1.07995 * 119.94023 * 179.97438 * 14 13 12 39 39 H 1.07995 * 119.97074 * 179.97438 * 15 14 13 40 40 H 1.09001 * 109.47167 * 225.27848 * 17 16 15 41 41 H 0.96693 * 114.00573 * 299.99804 * 18 17 16 42 42 H 1.09000 * 111.29667 * 139.18370 * 23 6 5 43 43 H 1.08997 * 111.30726 * 263.80268 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5499 1.7318 0.0000 4 6 2.5750 -1.0497 -1.4162 5 6 2.6358 -2.4208 -0.6913 6 7 2.6236 -2.3741 0.7582 7 6 2.6568 -3.5075 1.4866 8 8 2.6464 -3.4503 2.6980 9 6 2.7067 -4.8460 0.7959 10 8 2.7344 -5.8866 1.7750 11 6 2.7801 -7.1648 1.3157 12 6 2.7973 -7.4124 -0.0490 13 6 2.8432 -8.7130 -0.5134 14 6 2.8714 -9.7669 0.3808 15 6 2.8532 -9.5226 1.7418 16 6 2.8136 -8.2242 2.2112 17 6 2.8011 -7.9585 3.6945 18 8 4.0862 -7.4870 4.1047 19 14 2.3981 -9.5336 4.6042 20 1 3.4245 -10.5609 4.2939 21 1 2.3864 -9.2719 6.0659 22 1 1.0626 -10.0235 4.1778 23 6 2.5742 -1.0471 1.4179 24 1 -0.3633 0.4106 0.9421 25 1 -0.3634 0.6105 -0.8266 26 1 -0.3634 -1.0211 -0.1154 27 1 3.6332 1.6930 -0.1153 28 1 2.1164 2.2946 -0.8266 29 1 2.3022 2.2209 0.9421 30 1 3.5680 -0.7072 -1.7076 31 1 1.8987 -1.0789 -2.2706 32 1 3.5453 -2.9318 -1.0070 33 1 1.7837 -3.0163 -1.0190 34 1 1.8245 -4.9632 0.1666 35 1 3.6033 -4.9032 0.1788 36 1 2.7749 -6.5894 -0.7480 37 1 2.8562 -8.9062 -1.5758 38 1 2.9069 -10.7826 0.0158 39 1 2.8749 -10.3477 2.4383 40 1 2.0477 -7.2044 3.9222 41 1 4.8067 -8.1084 3.9322 42 1 1.9040 -1.0570 2.2774 43 1 3.5708 -0.7075 1.6996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_2989392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:08:09 Heat of formation + Delta-G solvation = -101.109312 kcal Electronic energy + Delta-G solvation = -23554.158077 eV Core-core repulsion = 20109.767542 eV Total energy + Delta-G solvation = -3444.390535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67588 -40.69004 -38.59094 -37.52399 -37.16791 -32.78645 -31.46081 -31.14792 -30.13577 -29.10462 -28.43432 -26.82437 -26.64556 -23.87083 -23.24935 -22.58876 -20.32054 -19.58096 -18.16711 -18.08120 -17.79079 -17.11281 -16.98275 -16.52874 -16.24460 -15.85764 -15.64011 -15.08748 -14.92801 -14.68985 -14.59210 -14.22871 -13.95815 -13.88838 -13.73479 -13.57599 -13.44515 -13.34548 -13.16418 -13.07018 -13.02199 -12.55148 -12.46031 -12.24752 -12.09513 -11.86843 -11.64766 -11.22242 -10.89106 -10.79798 -10.51029 -10.37029 -9.99890 -9.62502 -9.24529 0.20431 0.38470 1.12468 1.32592 1.37381 1.39049 1.47961 1.49292 1.86448 1.87483 1.97199 2.36527 2.51083 2.67760 3.34746 3.53292 3.73463 3.81053 3.85135 3.90456 3.93379 4.09715 4.27153 4.28561 4.35015 4.51379 4.56426 4.64421 4.72902 4.75545 4.79252 4.82412 4.85691 4.93601 4.95759 5.13418 5.20259 5.26504 5.33888 5.49251 5.49903 5.56469 5.63964 5.72675 6.13493 6.34669 6.72622 6.99448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.072 2.928 3 C -0.451 4.451 4 C -0.392 4.392 5 C 0.081 3.919 6 N -0.593 5.593 7 C 0.502 3.498 8 O -0.576 6.576 9 C 0.041 3.959 10 O -0.313 6.313 11 C 0.128 3.872 12 C -0.212 4.212 13 C -0.073 4.073 14 C -0.154 4.154 15 C -0.096 4.096 16 C -0.169 4.169 17 C -0.084 4.084 18 O -0.555 6.555 19 Si 0.997 3.003 20 H -0.232 1.232 21 H -0.280 1.280 22 H -0.252 1.252 23 C -0.214 4.214 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.384 0.616 42 H 0.063 0.937 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 0.744 -10.617 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.262 2.738 3 C -0.560 4.560 4 C -0.479 4.479 5 C -0.040 4.040 6 N -0.328 5.328 7 C 0.290 3.710 8 O -0.455 6.455 9 C -0.037 4.037 10 O -0.226 6.226 11 C 0.083 3.917 12 C -0.230 4.230 13 C -0.091 4.091 14 C -0.172 4.172 15 C -0.114 4.114 16 C -0.170 4.170 17 C -0.192 4.192 18 O -0.362 6.362 19 Si 0.818 3.182 20 H -0.155 1.155 21 H -0.206 1.206 22 H -0.176 1.176 23 C -0.376 4.376 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.160 0.840 40 H 0.110 0.890 41 H 0.233 0.767 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.340 0.598 -9.126 9.243 hybrid contribution 0.527 -0.003 0.231 0.575 sum -0.813 0.596 -8.895 8.952 Atomic orbital electron populations 1.26159 1.20412 1.04769 1.05074 0.79336 0.66148 0.65539 0.62773 1.26069 1.07196 1.17537 1.05181 1.26585 1.09035 1.02462 1.09822 1.21483 1.03984 1.01351 0.77145 1.48152 1.72155 1.04866 1.07608 1.20622 0.76651 0.86490 0.87214 1.90736 1.50878 1.87664 1.16262 1.22762 1.06036 0.83999 0.90922 1.86200 1.88475 1.12710 1.35215 1.19094 0.96330 0.83169 0.93130 1.21601 1.08334 1.00001 0.93106 1.21399 0.95068 0.91227 1.01434 1.21407 1.02498 1.00942 0.92338 1.21186 0.98135 0.94550 0.97481 1.19816 1.09062 0.92273 0.95871 1.25085 0.88877 1.11356 0.93918 1.86564 1.16708 1.48420 1.84510 0.85091 0.81223 0.74257 0.77598 1.15535 1.20555 1.17587 1.27759 1.06351 0.91772 1.11688 0.91576 0.89379 0.91452 0.90573 0.89583 0.91231 0.87984 0.86105 0.90348 0.89440 0.86092 0.86529 0.82865 0.82603 0.83088 0.84021 0.89040 0.76737 0.91843 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.75 8.65 113.37 0.98 3.73 16 2 Si 1.07 -9.09 13.64 68.60 0.94 -8.15 16 3 C -0.45 3.39 8.65 113.37 0.98 4.37 16 4 C -0.39 4.26 6.06 72.74 0.44 4.70 16 5 C 0.08 -0.54 5.17 87.41 0.45 -0.09 16 6 N -0.59 -1.56 3.08 -623.33 -1.92 -3.48 16 7 C 0.50 5.14 7.78 87.66 0.68 5.82 16 8 O -0.58 -12.87 16.42 16.01 0.26 -12.61 16 9 C 0.04 0.13 4.06 71.24 0.29 0.42 16 10 O -0.31 -3.63 9.00 -73.38 -0.66 -4.29 16 11 C 0.13 0.92 6.66 22.51 0.15 1.07 16 12 C -0.21 -0.08 9.04 22.37 0.20 0.12 16 13 C -0.07 0.16 10.04 22.26 0.22 0.38 16 14 C -0.15 0.17 10.04 22.28 0.22 0.40 16 15 C -0.10 -0.19 8.66 22.25 0.19 0.01 16 16 C -0.17 -1.13 5.27 -19.77 -0.10 -1.23 16 17 C -0.08 -0.69 2.38 71.24 0.17 -0.52 16 18 O -0.56 -5.90 12.88 -148.98 -1.92 -7.82 16 19 Si 1.00 3.17 25.48 68.60 1.75 4.91 16 20 H -0.23 0.07 6.74 99.48 0.67 0.74 16 21 H -0.28 -2.05 7.11 99.48 0.71 -1.34 16 22 H -0.25 -0.83 7.11 99.48 0.71 -0.12 16 23 C -0.21 -0.50 5.74 127.42 0.73 0.23 16 24 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 25 H 0.09 -0.72 7.96 -2.39 -0.02 -0.74 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 28 H 0.09 -0.77 7.96 -2.39 -0.02 -0.79 16 29 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 30 H 0.10 -1.20 8.06 -2.39 -0.02 -1.22 16 31 H 0.12 -1.74 8.06 -2.38 -0.02 -1.75 16 32 H 0.08 -0.67 7.82 -2.39 -0.02 -0.69 16 33 H 0.09 -0.90 7.74 -2.39 -0.02 -0.92 16 34 H 0.12 -0.45 7.33 -2.39 -0.02 -0.47 16 35 H 0.12 -0.30 7.38 -2.39 -0.02 -0.32 16 36 H 0.15 -0.87 6.30 -2.91 -0.02 -0.89 16 37 H 0.16 -1.24 8.06 -2.91 -0.02 -1.26 16 38 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 39 H 0.14 -0.22 4.89 -2.91 -0.01 -0.23 16 40 H 0.09 1.10 7.83 -2.39 -0.02 1.09 16 41 H 0.38 0.74 8.70 -74.06 -0.64 0.10 16 42 H 0.06 0.44 7.84 -2.39 -0.02 0.43 16 43 H 0.07 0.23 8.06 -2.39 -0.02 0.21 16 Total: 0.00 -27.92 353.56 5.14 -22.78 By element: Atomic # 1 Polarization: -11.82 SS G_CDS: 1.08 Total: -10.74 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 5.62 Total: 19.41 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -1.92 Total: -3.48 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -2.32 Total: -24.73 kcal Atomic # 14 Polarization: -5.92 SS G_CDS: 2.68 Total: -3.24 kcal Total: -27.92 5.14 -22.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_2989392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.328 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds