Wall clock time and date at job start Sun Mar 7 2021 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86304 * 111.61219 * 2 1 4 4 C 1.89798 * 111.85519 * 126.18110 * 2 1 3 5 5 C 1.54906 * 100.44716 * 102.23311 * 4 2 1 6 6 N 1.45802 * 115.36604 * 353.42225 * 5 4 2 7 7 C 1.34777 * 122.93949 * 213.63942 * 6 5 4 8 8 O 1.21286 * 120.00139 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99883 * 0.02685 * 7 6 5 10 10 C 1.53001 * 109.47195 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47125 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.46819 * 180.02562 * 11 10 9 13 13 C 1.35897 * 116.99736 * 180.02562 * 12 11 10 14 14 C 1.38712 * 120.05810 * 359.72315 * 13 12 11 15 15 C 1.38167 * 119.94653 * 179.72051 * 14 13 12 16 16 C 1.38247 * 120.05174 * 0.58029 * 15 14 13 17 17 C 1.38279 * 120.11245 * 359.67318 * 16 15 14 18 18 C 1.50703 * 119.97301 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.47024 * 245.02069 * 18 17 16 20 20 Si 1.86301 * 109.46906 * 5.02101 * 18 17 16 21 21 H 1.48499 * 109.47279 * 60.00175 * 20 18 17 22 22 H 1.48501 * 109.47155 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46978 * 300.00203 * 20 18 17 24 24 C 1.38124 * 120.05947 * 0.04480 * 17 16 15 25 25 C 1.49290 * 114.12741 * 33.64064 * 6 5 4 26 26 H 1.09001 * 109.47042 * 293.82313 * 1 2 3 27 27 H 1.09004 * 109.47325 * 53.81945 * 1 2 3 28 28 H 1.09000 * 109.47165 * 173.82073 * 1 2 3 29 29 H 1.08997 * 109.47122 * 186.17555 * 3 2 1 30 30 H 1.08996 * 109.46977 * 306.18029 * 3 2 1 31 31 H 1.08996 * 109.46654 * 66.18005 * 3 2 1 32 32 H 1.09002 * 111.22602 * 344.41910 * 4 2 1 33 33 H 1.09004 * 111.22698 * 220.04432 * 4 2 1 34 34 H 1.08997 * 108.28457 * 114.91842 * 5 4 2 35 35 H 1.09001 * 108.28233 * 231.97181 * 5 4 2 36 36 H 1.09003 * 109.47084 * 299.99642 * 9 7 6 37 37 H 1.09001 * 109.46935 * 59.99704 * 9 7 6 38 38 H 1.09003 * 109.46787 * 299.99793 * 10 9 7 39 39 H 1.08999 * 109.47235 * 59.99484 * 10 9 7 40 40 H 1.08997 * 109.46735 * 299.99789 * 11 10 9 41 41 H 1.08999 * 109.47016 * 60.00229 * 11 10 9 42 42 H 1.08002 * 120.02357 * 0.02562 * 14 13 12 43 43 H 1.08001 * 119.97163 * 180.27235 * 15 14 13 44 44 H 1.08006 * 119.93846 * 179.70058 * 16 15 14 45 45 H 1.08996 * 109.47436 * 125.01928 * 18 17 16 46 46 H 0.96697 * 113.99666 * 179.97438 * 19 18 17 47 47 H 1.07996 * 120.03289 * 179.97438 * 24 17 16 48 48 H 1.09001 * 111.61009 * 77.27375 * 25 6 5 49 49 H 1.09000 * 111.61665 * 202.70821 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5492 1.7321 0.0000 4 6 2.5695 -1.0399 1.4219 5 6 2.9737 -2.3246 0.6564 6 7 2.5673 -2.3717 -0.7430 7 6 2.2185 -3.5145 -1.3668 8 8 1.8893 -3.4922 -2.5339 9 6 2.2375 -4.8198 -0.6140 10 6 1.8029 -5.9525 -1.5462 11 6 1.8216 -7.2778 -0.7817 12 8 1.4163 -8.3357 -1.6527 13 6 1.3780 -9.5879 -1.1259 14 6 1.7287 -9.7949 0.2001 15 6 1.6833 -11.0681 0.7348 16 6 1.3002 -12.1370 -0.0538 17 6 0.9551 -11.9340 -1.3773 18 6 0.5374 -13.1014 -2.2340 19 8 1.4954 -13.2938 -3.2768 20 14 0.4433 -14.6386 -1.1857 21 1 -0.5521 -14.4387 -0.1021 22 1 0.0323 -15.7891 -2.0299 23 1 1.7754 -14.9135 -0.5896 24 6 0.9933 -10.6623 -1.9151 25 6 2.5713 -1.0436 -1.4248 26 1 -0.3633 0.4151 0.9401 27 1 -0.3634 0.6067 -0.8295 28 1 -0.3633 -1.0217 -0.1106 29 1 3.6328 1.6935 -0.1105 30 1 2.1190 2.2933 -0.8295 31 1 2.2971 2.2226 0.9401 32 1 1.8080 -1.2510 2.1727 33 1 3.4384 -0.5576 1.8697 34 1 4.0583 -2.4223 0.7011 35 1 2.5341 -3.1804 1.1687 36 1 3.2466 -5.0153 -0.2512 37 1 1.5522 -4.7615 0.2316 38 1 0.7939 -5.7572 -1.9094 39 1 2.4885 -6.0106 -2.3916 40 1 2.8304 -7.4732 -0.4182 41 1 1.1357 -7.2194 0.0633 42 1 2.0323 -8.9608 0.8153 43 1 1.9521 -11.2290 1.7684 44 1 1.2700 -13.1321 0.3648 45 1 -0.4403 -12.8996 -2.6715 46 1 1.2901 -14.0308 -3.8683 47 1 0.7241 -10.5044 -2.9490 48 1 3.5818 -0.7303 -1.6875 49 1 1.9135 -1.0363 -2.2938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915426_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:08:45 Heat of formation + Delta-G solvation = -119.986701 kcal Electronic energy + Delta-G solvation = -25988.441318 eV Core-core repulsion = 22232.156959 eV Total energy + Delta-G solvation = -3756.284358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20209 -40.72391 -39.03526 -37.32595 -37.05965 -34.88173 -32.51285 -31.28051 -31.17342 -29.48332 -29.03780 -28.66022 -27.03990 -26.33496 -23.96662 -23.61326 -23.01778 -21.69386 -20.01030 -18.79821 -18.46083 -18.15209 -17.55915 -17.37192 -16.95499 -16.84326 -16.49664 -15.80345 -15.63419 -15.51931 -14.90115 -14.74855 -14.61736 -14.40280 -14.16269 -14.11418 -14.02436 -13.91603 -13.61842 -13.52282 -13.45954 -13.37153 -13.35523 -13.23332 -13.07103 -12.66050 -12.51253 -12.40775 -12.21277 -12.02541 -11.83743 -11.61622 -11.56423 -11.26469 -11.09317 -10.81490 -10.65833 -10.36747 -9.81188 -9.44730 -9.13372 0.29901 0.50890 1.14124 1.21675 1.45240 1.51438 1.59093 1.60498 1.76216 1.87285 1.91805 2.22865 2.34169 2.72771 3.42657 3.50305 3.75295 3.81481 3.82033 3.88322 3.93471 4.00414 4.08410 4.13009 4.23353 4.28632 4.31281 4.33079 4.41445 4.55180 4.55856 4.57635 4.59744 4.60239 4.61790 4.63172 4.71714 4.82717 4.95889 4.98768 5.01554 5.06419 5.20480 5.32132 5.34936 5.36763 5.40329 5.45267 5.54656 5.77512 6.41306 6.49842 6.59588 7.22064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.441 4.441 2 Si 0.982 3.018 3 C -0.441 4.441 4 C -0.407 4.407 5 C 0.103 3.897 6 N -0.609 5.609 7 C 0.520 3.480 8 O -0.534 6.534 9 C -0.137 4.137 10 C -0.106 4.106 11 C 0.060 3.940 12 O -0.311 6.311 13 C 0.132 3.868 14 C -0.206 4.206 15 C -0.073 4.073 16 C -0.163 4.163 17 C -0.037 4.037 18 C -0.084 4.084 19 O -0.543 6.543 20 Si 0.951 3.049 21 H -0.249 1.249 22 H -0.257 1.257 23 H -0.248 1.248 24 C -0.122 4.122 25 C -0.178 4.178 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.078 0.922 46 H 0.381 0.619 47 H 0.135 0.865 48 H 0.077 0.923 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 2.070 5.793 6.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.550 4.550 2 Si 1.178 2.822 3 C -0.550 4.550 4 C -0.494 4.494 5 C -0.020 4.020 6 N -0.344 5.344 7 C 0.309 3.691 8 O -0.410 6.410 9 C -0.177 4.177 10 C -0.144 4.144 11 C -0.015 4.015 12 O -0.224 6.224 13 C 0.087 3.913 14 C -0.224 4.224 15 C -0.091 4.091 16 C -0.181 4.181 17 C -0.037 4.037 18 C -0.194 4.194 19 O -0.349 6.349 20 Si 0.774 3.226 21 H -0.173 1.173 22 H -0.181 1.181 23 H -0.171 1.171 24 C -0.141 4.141 25 C -0.346 4.346 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.228 0.772 47 H 0.152 0.848 48 H 0.095 0.905 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.141 1.895 5.746 6.052 hybrid contribution 0.036 -0.168 -0.229 0.286 sum -0.105 1.726 5.517 5.782 Atomic orbital electron populations 1.25977 1.19313 1.04847 1.04842 0.80515 0.68181 0.66972 0.66509 1.25971 1.06879 1.17206 1.04945 1.26638 1.07550 1.05390 1.09806 1.21154 1.00221 0.99611 0.80985 1.48531 1.67619 1.07247 1.10996 1.20407 0.76782 0.84723 0.87210 1.90735 1.47435 1.86253 1.16593 1.21578 1.04262 0.92243 0.99604 1.21248 1.04687 0.89966 0.98454 1.22822 0.99798 0.85934 0.92978 1.86081 1.82963 1.13606 1.39795 1.18995 0.95749 0.84625 0.91962 1.21295 1.07522 0.98788 0.94832 1.20856 0.96905 0.91634 0.99684 1.20900 1.03820 0.99328 0.94002 1.19023 0.98338 0.93099 0.93215 1.24785 0.94578 1.04825 0.95232 1.86524 1.48831 1.56160 1.43376 0.85678 0.81569 0.75908 0.79469 1.17286 1.18135 1.17115 1.20240 1.03807 0.89699 1.00313 1.27309 1.06606 0.91205 1.09517 0.90727 0.90778 0.91049 0.90737 0.90744 0.90686 0.89212 0.88757 0.91882 0.90586 0.88478 0.88446 0.89799 0.89792 0.91784 0.91777 0.85231 0.85238 0.86057 0.90370 0.77198 0.84754 0.90474 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.92 8.65 101.05 0.87 1.79 16 2 Si 0.98 -3.59 13.71 -169.99 -2.33 -5.92 16 3 C -0.44 1.42 8.65 101.05 0.87 2.29 16 4 C -0.41 1.57 5.93 38.16 0.23 1.79 16 5 C 0.10 -0.26 6.09 -3.41 -0.02 -0.29 16 6 N -0.61 -0.16 2.84 -110.19 -0.31 -0.47 16 7 C 0.52 1.24 7.78 -10.99 -0.09 1.16 16 8 O -0.53 -3.61 15.86 5.55 0.09 -3.52 16 9 C -0.14 0.15 4.33 -27.88 -0.12 0.03 16 10 C -0.11 -0.08 4.87 -26.73 -0.13 -0.21 16 11 C 0.06 0.00 4.74 37.16 0.18 0.18 16 12 O -0.31 -1.04 10.14 -19.42 -0.20 -1.23 16 13 C 0.13 0.43 6.69 -39.21 -0.26 0.17 16 14 C -0.21 -0.31 9.04 -39.43 -0.36 -0.67 16 15 C -0.07 -0.09 10.04 -39.60 -0.40 -0.48 16 16 C -0.16 -0.32 8.66 -39.56 -0.34 -0.66 16 17 C -0.04 -0.10 5.38 -104.65 -0.56 -0.66 16 18 C -0.08 -0.05 2.79 36.01 0.10 0.05 16 19 O -0.54 -0.63 12.81 -35.23 -0.45 -1.08 16 20 Si 0.95 -0.12 25.14 -169.99 -4.27 -4.39 16 21 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 22 H -0.26 0.03 7.11 56.52 0.40 0.44 16 23 H -0.25 -0.30 7.04 56.52 0.40 0.10 16 24 C -0.12 -0.42 9.62 -39.43 -0.38 -0.80 16 25 C -0.18 0.06 6.08 61.40 0.37 0.43 16 26 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.23 7.96 -51.93 -0.41 -0.65 16 30 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 31 H 0.07 -0.25 7.96 -51.93 -0.41 -0.66 16 32 H 0.09 -0.38 8.05 -51.93 -0.42 -0.80 16 33 H 0.09 -0.42 8.05 -51.93 -0.42 -0.84 16 34 H 0.06 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.08 -0.29 6.51 -51.93 -0.34 -0.63 16 36 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 37 H 0.10 -0.32 7.56 -51.93 -0.39 -0.71 16 38 H 0.08 0.18 8.10 -51.93 -0.42 -0.24 16 39 H 0.08 0.20 8.10 -51.93 -0.42 -0.22 16 40 H 0.06 -0.08 7.65 -51.93 -0.40 -0.47 16 41 H 0.06 -0.10 7.67 -51.93 -0.40 -0.49 16 42 H 0.13 -0.10 6.30 -52.49 -0.33 -0.44 16 43 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 44 H 0.12 0.07 4.86 -52.48 -0.26 -0.19 16 45 H 0.08 -0.09 7.96 -51.93 -0.41 -0.51 16 46 H 0.38 -1.31 8.74 45.56 0.40 -0.91 16 47 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 48 H 0.08 -0.06 8.07 -51.93 -0.42 -0.48 16 49 H 0.09 0.13 7.57 -51.93 -0.39 -0.27 16 LS Contribution 396.47 15.07 5.97 5.97 Total: 0.00 -9.22 396.47 -9.12 -18.34 By element: Atomic # 1 Polarization: -4.22 SS G_CDS: -7.59 Total: -11.81 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.03 Total: 4.12 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -0.31 Total: -0.47 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.56 Total: -5.83 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: -6.60 Total: -10.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -9.22 -9.12 -18.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.643 kcal (2) G-P(sol) polarization free energy of solvation -9.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds