Wall clock time and date at job start Sun Mar 7 2021 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86304 * 111.61219 * 2 1 4 4 C 1.89798 * 111.85519 * 126.18110 * 2 1 3 5 5 C 1.54906 * 100.44716 * 102.23311 * 4 2 1 6 6 N 1.45802 * 115.36604 * 353.42225 * 5 4 2 7 7 C 1.34777 * 122.93949 * 213.63942 * 6 5 4 8 8 O 1.21286 * 120.00139 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99883 * 0.02685 * 7 6 5 10 10 C 1.53001 * 109.47195 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47125 * 180.02562 * 10 9 7 12 12 O 1.42901 * 109.46819 * 180.02562 * 11 10 9 13 13 C 1.35897 * 116.99736 * 180.02562 * 12 11 10 14 14 C 1.38712 * 120.05810 * 359.72315 * 13 12 11 15 15 C 1.38167 * 119.94653 * 179.72051 * 14 13 12 16 16 C 1.38247 * 120.05174 * 0.58029 * 15 14 13 17 17 C 1.38279 * 120.11245 * 359.67318 * 16 15 14 18 18 C 1.50703 * 119.97301 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.47024 * 245.02069 * 18 17 16 20 20 Si 1.86301 * 109.46906 * 5.02101 * 18 17 16 21 21 H 1.48499 * 109.47279 * 60.00175 * 20 18 17 22 22 H 1.48501 * 109.47155 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46978 * 300.00203 * 20 18 17 24 24 C 1.38124 * 120.05947 * 0.04480 * 17 16 15 25 25 C 1.49290 * 114.12741 * 33.64064 * 6 5 4 26 26 H 1.09001 * 109.47042 * 293.82313 * 1 2 3 27 27 H 1.09004 * 109.47325 * 53.81945 * 1 2 3 28 28 H 1.09000 * 109.47165 * 173.82073 * 1 2 3 29 29 H 1.08997 * 109.47122 * 186.17555 * 3 2 1 30 30 H 1.08996 * 109.46977 * 306.18029 * 3 2 1 31 31 H 1.08996 * 109.46654 * 66.18005 * 3 2 1 32 32 H 1.09002 * 111.22602 * 344.41910 * 4 2 1 33 33 H 1.09004 * 111.22698 * 220.04432 * 4 2 1 34 34 H 1.08997 * 108.28457 * 114.91842 * 5 4 2 35 35 H 1.09001 * 108.28233 * 231.97181 * 5 4 2 36 36 H 1.09003 * 109.47084 * 299.99642 * 9 7 6 37 37 H 1.09001 * 109.46935 * 59.99704 * 9 7 6 38 38 H 1.09003 * 109.46787 * 299.99793 * 10 9 7 39 39 H 1.08999 * 109.47235 * 59.99484 * 10 9 7 40 40 H 1.08997 * 109.46735 * 299.99789 * 11 10 9 41 41 H 1.08999 * 109.47016 * 60.00229 * 11 10 9 42 42 H 1.08002 * 120.02357 * 0.02562 * 14 13 12 43 43 H 1.08001 * 119.97163 * 180.27235 * 15 14 13 44 44 H 1.08006 * 119.93846 * 179.70058 * 16 15 14 45 45 H 1.08996 * 109.47436 * 125.01928 * 18 17 16 46 46 H 0.96697 * 113.99666 * 179.97438 * 19 18 17 47 47 H 1.07996 * 120.03289 * 179.97438 * 24 17 16 48 48 H 1.09001 * 111.61009 * 77.27375 * 25 6 5 49 49 H 1.09000 * 111.61665 * 202.70821 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5492 1.7321 0.0000 4 6 2.5695 -1.0399 1.4219 5 6 2.9737 -2.3246 0.6564 6 7 2.5673 -2.3717 -0.7430 7 6 2.2185 -3.5145 -1.3668 8 8 1.8893 -3.4922 -2.5339 9 6 2.2375 -4.8198 -0.6140 10 6 1.8029 -5.9525 -1.5462 11 6 1.8216 -7.2778 -0.7817 12 8 1.4163 -8.3357 -1.6527 13 6 1.3780 -9.5879 -1.1259 14 6 1.7287 -9.7949 0.2001 15 6 1.6833 -11.0681 0.7348 16 6 1.3002 -12.1370 -0.0538 17 6 0.9551 -11.9340 -1.3773 18 6 0.5374 -13.1014 -2.2340 19 8 1.4954 -13.2938 -3.2768 20 14 0.4433 -14.6386 -1.1857 21 1 -0.5521 -14.4387 -0.1021 22 1 0.0323 -15.7891 -2.0299 23 1 1.7754 -14.9135 -0.5896 24 6 0.9933 -10.6623 -1.9151 25 6 2.5713 -1.0436 -1.4248 26 1 -0.3633 0.4151 0.9401 27 1 -0.3634 0.6067 -0.8295 28 1 -0.3633 -1.0217 -0.1106 29 1 3.6328 1.6935 -0.1105 30 1 2.1190 2.2933 -0.8295 31 1 2.2971 2.2226 0.9401 32 1 1.8080 -1.2510 2.1727 33 1 3.4384 -0.5576 1.8697 34 1 4.0583 -2.4223 0.7011 35 1 2.5341 -3.1804 1.1687 36 1 3.2466 -5.0153 -0.2512 37 1 1.5522 -4.7615 0.2316 38 1 0.7939 -5.7572 -1.9094 39 1 2.4885 -6.0106 -2.3916 40 1 2.8304 -7.4732 -0.4182 41 1 1.1357 -7.2194 0.0633 42 1 2.0323 -8.9608 0.8153 43 1 1.9521 -11.2290 1.7684 44 1 1.2700 -13.1321 0.3648 45 1 -0.4403 -12.8996 -2.6715 46 1 1.2901 -14.0308 -3.8683 47 1 0.7241 -10.5044 -2.9490 48 1 3.5818 -0.7303 -1.6875 49 1 1.9135 -1.0363 -2.2938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:08:44 Heat of formation + Delta-G solvation = -115.899226 kcal Electronic energy + Delta-G solvation = -25988.264071 eV Core-core repulsion = 22232.156959 eV Total energy + Delta-G solvation = -3756.107112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30401 -40.83135 -39.12029 -37.36630 -37.10087 -34.94792 -32.58805 -31.34661 -31.02011 -29.36909 -28.96561 -28.43547 -27.06431 -26.32622 -23.84658 -23.69878 -23.02634 -21.75551 -20.01652 -18.87359 -18.49264 -18.20066 -17.58212 -17.45300 -17.05658 -16.84008 -16.55187 -15.83813 -15.66876 -15.45441 -14.92200 -14.67765 -14.58005 -14.46835 -14.14284 -14.04184 -13.92276 -13.79721 -13.52860 -13.48685 -13.32234 -13.30476 -13.24113 -13.13735 -13.00989 -12.67796 -12.46103 -12.29827 -12.22563 -12.06150 -11.85370 -11.65646 -11.60569 -11.25055 -10.87501 -10.78765 -10.50232 -10.38211 -9.90581 -9.44810 -9.26412 0.19812 0.37872 1.14318 1.41719 1.47308 1.52385 1.60798 1.78073 1.87899 1.90144 2.02520 2.25455 2.49265 2.63411 3.44218 3.51724 3.78423 3.83516 3.85573 3.94587 4.00605 4.05675 4.11000 4.24702 4.26896 4.32037 4.34433 4.38700 4.49235 4.53634 4.62099 4.68762 4.71853 4.74463 4.82598 4.86332 4.86914 4.96031 4.97182 4.99098 5.10129 5.14807 5.25215 5.28013 5.34940 5.44017 5.49563 5.55504 5.64057 5.70995 6.39244 6.41758 6.79140 7.12589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.062 2.938 3 C -0.449 4.449 4 C -0.401 4.401 5 C 0.091 3.909 6 N -0.608 5.608 7 C 0.506 3.494 8 O -0.595 6.595 9 C -0.127 4.127 10 C -0.101 4.101 11 C 0.059 3.941 12 O -0.336 6.336 13 C 0.117 3.883 14 C -0.206 4.206 15 C -0.073 4.073 16 C -0.176 4.176 17 C -0.050 4.050 18 C -0.092 4.092 19 O -0.564 6.564 20 Si 0.991 3.009 21 H -0.254 1.254 22 H -0.255 1.255 23 H -0.267 1.267 24 C -0.147 4.147 25 C -0.215 4.215 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.398 0.602 47 H 0.123 0.877 48 H 0.075 0.925 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 2.138 9.095 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.253 2.747 3 C -0.558 4.558 4 C -0.488 4.488 5 C -0.031 4.031 6 N -0.341 5.341 7 C 0.296 3.704 8 O -0.477 6.477 9 C -0.167 4.167 10 C -0.139 4.139 11 C -0.016 4.016 12 O -0.251 6.251 13 C 0.071 3.929 14 C -0.225 4.225 15 C -0.091 4.091 16 C -0.194 4.194 17 C -0.050 4.050 18 C -0.201 4.201 19 O -0.373 6.373 20 Si 0.814 3.186 21 H -0.178 1.178 22 H -0.179 1.179 23 H -0.192 1.192 24 C -0.166 4.166 25 C -0.379 4.379 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.150 0.850 45 H 0.109 0.891 46 H 0.249 0.751 47 H 0.141 0.859 48 H 0.094 0.906 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.432 1.962 9.032 9.253 hybrid contribution -0.129 -0.134 -1.324 1.338 sum 0.303 1.827 7.708 7.927 Atomic orbital electron populations 1.26227 1.21485 1.03893 1.05079 0.79346 0.65664 0.65706 0.63995 1.26062 1.07095 1.17424 1.05224 1.26629 1.08510 1.04227 1.09454 1.21447 1.00985 1.01376 0.79296 1.48738 1.66231 1.06784 1.12322 1.21122 0.76104 0.86370 0.86808 1.90702 1.50444 1.87240 1.19282 1.21594 1.06500 0.89272 0.99287 1.21152 1.02714 0.91604 0.98444 1.22979 1.01369 0.84369 0.92834 1.86051 1.83350 1.14309 1.41375 1.19199 0.96337 0.84430 0.92895 1.21586 1.06801 0.99885 0.94194 1.21250 0.95785 0.91185 1.00895 1.21178 1.03941 1.00336 0.93950 1.19336 0.98289 0.93364 0.94035 1.24970 0.94924 1.04831 0.95387 1.86473 1.49432 1.57419 1.44013 0.85115 0.80004 0.74923 0.78565 1.17843 1.17922 1.19160 1.20352 1.05340 0.90691 1.00238 1.27860 1.06480 0.92672 1.10859 0.89684 0.91560 0.92395 0.90468 0.91260 0.89795 0.87804 0.87209 0.91026 0.88545 0.85832 0.85340 0.92056 0.92422 0.89941 0.89537 0.82647 0.82451 0.84971 0.89062 0.75149 0.85868 0.90601 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.78 8.65 113.37 0.98 2.76 16 2 Si 1.06 -8.31 13.71 68.60 0.94 -7.37 16 3 C -0.45 3.32 8.65 113.37 0.98 4.30 16 4 C -0.40 4.15 5.93 72.63 0.43 4.59 16 5 C 0.09 -0.63 6.09 87.16 0.53 -0.10 16 6 N -0.61 -0.68 2.84 -620.93 -1.76 -2.44 16 7 C 0.51 3.23 7.78 87.66 0.68 3.91 16 8 O -0.60 -10.31 15.86 -3.05 -0.05 -10.36 16 9 C -0.13 0.32 4.33 29.85 0.13 0.45 16 10 C -0.10 -0.31 4.87 30.60 0.15 -0.16 16 11 C 0.06 -0.01 4.74 71.98 0.34 0.34 16 12 O -0.34 -2.73 10.14 -92.39 -0.94 -3.67 16 13 C 0.12 0.86 6.69 22.51 0.15 1.01 16 14 C -0.21 -0.44 9.04 22.37 0.20 -0.24 16 15 C -0.07 -0.09 10.04 22.25 0.22 0.13 16 16 C -0.18 -0.68 8.66 22.28 0.19 -0.49 16 17 C -0.05 -0.31 5.38 -19.88 -0.11 -0.42 16 18 C -0.09 -0.17 2.79 71.24 0.20 0.03 16 19 O -0.56 -1.83 12.81 -148.98 -1.91 -3.74 16 20 Si 0.99 -0.38 25.14 68.60 1.72 1.34 16 21 H -0.25 -0.07 7.11 99.48 0.71 0.64 16 22 H -0.26 0.24 7.11 99.48 0.71 0.95 16 23 H -0.27 -0.69 7.04 99.48 0.70 0.01 16 24 C -0.15 -1.31 9.62 22.37 0.22 -1.09 16 25 C -0.21 -0.25 6.08 127.23 0.77 0.52 16 26 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 27 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 29 H 0.08 -0.57 7.96 -2.39 -0.02 -0.59 16 30 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 31 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 32 H 0.10 -1.27 8.05 -2.39 -0.02 -1.29 16 33 H 0.11 -1.37 8.05 -2.38 -0.02 -1.39 16 34 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.10 -1.04 6.51 -2.39 -0.02 -1.06 16 36 H 0.12 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H 0.13 -1.12 7.56 -2.39 -0.02 -1.14 16 38 H 0.06 0.44 8.10 -2.39 -0.02 0.42 16 39 H 0.06 0.46 8.10 -2.39 -0.02 0.44 16 40 H 0.08 -0.31 7.65 -2.39 -0.02 -0.33 16 41 H 0.09 -0.40 7.67 -2.39 -0.02 -0.42 16 42 H 0.16 -0.62 6.30 -2.91 -0.02 -0.64 16 43 H 0.16 -0.78 8.06 -2.91 -0.02 -0.81 16 44 H 0.13 0.11 4.86 -2.91 -0.01 0.09 16 45 H 0.09 -0.15 7.96 -2.39 -0.02 -0.17 16 46 H 0.40 -2.53 8.74 -74.06 -0.65 -3.17 16 47 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 48 H 0.08 0.04 8.07 -2.39 -0.02 0.02 16 49 H 0.07 0.44 7.57 -2.39 -0.02 0.42 16 Total: 0.00 -26.16 396.47 5.11 -21.05 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: 1.03 Total: -10.36 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.07 Total: 15.55 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: -1.76 Total: -2.44 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -2.89 Total: -17.77 kcal Atomic # 14 Polarization: -8.69 SS G_CDS: 2.66 Total: -6.03 kcal Total: -26.16 5.11 -21.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.849 kcal (2) G-P(sol) polarization free energy of solvation -26.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds