Wall clock time and date at job start Sun Mar 7 2021 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86310 * 111.61014 * 2 1 4 4 C 1.89790 * 111.85947 * 126.17799 * 2 1 3 5 5 C 1.54911 * 100.40750 * 131.74275 * 4 2 1 6 6 N 1.45808 * 115.33234 * 6.57345 * 5 4 2 7 7 C 1.34784 * 122.93596 * 146.34258 * 6 5 4 8 8 O 1.21612 * 120.00121 * 173.93415 * 7 6 5 9 9 C 1.47377 * 119.99594 * 353.92925 * 7 6 5 10 10 C 1.36425 * 127.19149 * 200.61323 * 9 7 6 11 11 C 1.50700 * 125.79706 * 0.02562 * 10 9 7 12 12 O 1.42904 * 109.46786 * 90.00029 * 11 10 9 13 13 C 1.35902 * 116.99995 * 179.97438 * 12 11 10 14 14 C 1.38732 * 120.05269 * 359.72591 * 13 12 11 15 15 C 1.38145 * 119.94388 * 179.74541 * 14 13 12 16 16 C 1.38272 * 120.05505 * 0.50931 * 15 14 13 17 17 C 1.50693 * 119.94727 * 179.74698 * 16 15 14 18 18 O 1.42894 * 109.47336 * 245.01938 * 17 16 15 19 19 Si 1.86306 * 109.47196 * 5.01944 * 17 16 15 20 20 H 1.48503 * 109.46982 * 59.99848 * 19 17 16 21 21 H 1.48498 * 109.47394 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47251 * 300.00337 * 19 17 16 23 23 C 1.38268 * 120.10694 * 359.76254 * 16 15 14 24 24 C 1.38139 * 120.06042 * 359.97438 * 23 16 15 25 25 O 1.33646 * 108.39509 * 179.83840 * 10 9 7 26 26 C 1.34211 * 110.91479 * 0.45299 * 25 10 9 27 27 C 1.34186 * 109.12149 * 359.71965 * 26 25 10 28 28 C 1.49250 * 114.14893 * 326.31077 * 6 5 4 29 29 H 1.09001 * 109.46783 * 293.81725 * 1 2 3 30 30 H 1.08996 * 109.47619 * 53.82218 * 1 2 3 31 31 H 1.08997 * 109.46810 * 173.82326 * 1 2 3 32 32 H 1.08993 * 109.46979 * 186.18116 * 3 2 1 33 33 H 1.09004 * 109.46701 * 306.18511 * 3 2 1 34 34 H 1.09002 * 109.46472 * 66.18025 * 3 2 1 35 35 H 1.09003 * 111.22579 * 13.95813 * 4 2 1 36 36 H 1.08997 * 111.26976 * 249.55022 * 4 2 1 37 37 H 1.09002 * 108.28421 * 128.03938 * 5 4 2 38 38 H 1.09001 * 108.28658 * 245.10246 * 5 4 2 39 39 H 1.08998 * 109.46731 * 209.99564 * 11 10 9 40 40 H 1.08995 * 109.47373 * 330.00411 * 11 10 9 41 41 H 1.07998 * 120.02956 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.97395 * 180.22916 * 15 14 13 43 43 H 1.09004 * 109.47571 * 125.01856 * 17 16 15 44 44 H 0.96710 * 113.99833 * 59.99587 * 18 17 16 45 45 H 1.07998 * 119.97107 * 179.97438 * 23 16 15 46 46 H 1.07997 * 120.03470 * 179.97438 * 24 23 16 47 47 H 1.07998 * 125.44755 * 179.72612 * 26 25 10 48 48 H 1.07995 * 127.02404 * 180.02562 * 27 26 25 49 49 H 1.08997 * 111.63806 * 282.77159 * 28 6 5 50 50 H 1.09004 * 111.66144 * 157.34808 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5491 1.7321 0.0000 4 6 2.5696 -1.0398 1.4218 5 6 3.6153 -1.8878 0.6555 6 7 3.8076 -1.5258 -0.7438 7 6 4.9982 -1.6208 -1.3683 8 8 5.0764 -1.4104 -2.5635 9 6 6.2053 -1.9794 -0.6027 10 6 7.5033 -1.7495 -0.9540 11 6 7.9677 -1.0707 -2.2168 12 8 8.0726 0.3363 -1.9904 13 6 8.4827 1.1008 -3.0365 14 6 8.7836 0.5081 -4.2542 15 6 9.1953 1.2878 -5.3176 16 6 9.3176 2.6568 -5.1660 17 6 9.7724 3.5044 -6.3260 18 8 11.0362 4.0954 -6.0176 19 14 9.9391 2.4395 -7.8456 20 1 8.6256 1.8253 -8.1662 21 1 10.3878 3.2746 -8.9886 22 1 10.9374 1.3694 -7.5931 23 6 9.0237 3.2492 -3.9518 24 6 8.6065 2.4744 -2.8869 25 8 8.2928 -2.2248 0.0139 26 6 7.5654 -2.7750 0.9986 27 6 6.2626 -2.6655 0.6964 28 6 2.5708 -1.0417 -1.4248 29 1 -0.3633 0.4150 0.9402 30 1 -0.3634 0.6066 -0.8295 31 1 -0.3633 -1.0217 -0.1106 32 1 3.6327 1.6936 -0.1106 33 1 2.1188 2.2933 -0.8295 34 1 2.2970 2.2227 0.9402 35 1 1.8014 -1.6705 1.8691 36 1 3.0462 -0.4102 2.1732 37 1 4.5729 -1.7944 1.1676 38 1 3.3070 -2.9324 0.6994 39 1 8.9419 -1.4660 -2.5046 40 1 7.2494 -1.2577 -3.0151 41 1 8.6925 -0.5616 -4.3718 42 1 9.4260 0.8274 -6.2669 43 1 9.0396 4.2898 -6.5115 44 1 11.7378 3.4537 -5.8407 45 1 9.1205 4.3185 -3.8357 46 1 8.3775 2.9375 -1.9385 47 1 7.9647 -3.2326 1.8916 48 1 5.4269 -3.0106 1.2870 49 1 1.9078 -1.8660 -1.6874 50 1 2.8046 -0.4271 -2.2941 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_4549634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:09:19 Heat of formation + Delta-G solvation = -69.537036 kcal Electronic energy + Delta-G solvation = -31996.066284 eV Core-core repulsion = 27694.146593 eV Total energy + Delta-G solvation = -4301.919691 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.151 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.80948 -41.37030 -40.64705 -39.29181 -37.30639 -37.15622 -34.20173 -32.94172 -32.05662 -31.46205 -31.14090 -29.24507 -28.58910 -28.43691 -27.25554 -26.16136 -24.66077 -23.97566 -23.06057 -22.53397 -22.24261 -20.06756 -19.59605 -18.67793 -18.31266 -17.75274 -17.38863 -17.14615 -17.05187 -16.72643 -16.67004 -16.40562 -16.01382 -15.74979 -15.33345 -15.09634 -14.93721 -14.63990 -14.53045 -14.48875 -14.10867 -13.99651 -13.92891 -13.81376 -13.77629 -13.55026 -13.52642 -13.31433 -13.19240 -13.13258 -12.85391 -12.34106 -12.25712 -12.20685 -12.12104 -12.09355 -11.60661 -11.37238 -11.05454 -10.92829 -10.85840 -10.48129 -10.40577 -10.11687 -9.94986 -9.48106 -9.31511 -0.07252 0.19558 0.22914 0.97358 1.17206 1.37385 1.42870 1.46108 1.50998 1.77911 1.82129 1.89510 1.95789 2.05857 2.38024 2.43815 2.58106 3.28523 3.46283 3.54732 3.59993 3.65672 3.76184 3.83916 3.87487 3.92900 4.03179 4.21268 4.22986 4.36250 4.38740 4.41187 4.53537 4.60329 4.66844 4.68172 4.69802 4.72881 4.78523 4.84030 4.86238 4.89157 4.93899 5.06174 5.08192 5.17926 5.19294 5.23385 5.41667 5.44756 5.50446 5.62919 5.63507 5.83237 6.16998 6.27618 6.70869 6.96314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 1.059 2.941 3 C -0.461 4.461 4 C -0.402 4.402 5 C 0.070 3.930 6 N -0.594 5.594 7 C 0.579 3.421 8 O -0.582 6.582 9 C -0.221 4.221 10 C 0.037 3.963 11 C 0.132 3.868 12 O -0.323 6.323 13 C 0.120 3.880 14 C -0.209 4.209 15 C -0.090 4.090 16 C -0.158 4.158 17 C -0.071 4.071 18 O -0.551 6.551 19 Si 0.978 3.022 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.250 1.250 23 C -0.052 4.052 24 C -0.159 4.159 25 O -0.175 6.175 26 C -0.004 4.004 27 C -0.211 4.211 28 C -0.211 4.211 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.125 0.875 44 H 0.389 0.611 45 H 0.149 0.851 46 H 0.138 0.862 47 H 0.257 0.743 48 H 0.199 0.801 49 H 0.083 0.917 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -2.291 6.706 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.250 2.750 3 C -0.568 4.568 4 C -0.489 4.489 5 C -0.051 4.051 6 N -0.326 5.326 7 C 0.370 3.630 8 O -0.464 6.464 9 C -0.226 4.226 10 C -0.016 4.016 11 C 0.058 3.942 12 O -0.238 6.238 13 C 0.075 3.925 14 C -0.227 4.227 15 C -0.108 4.108 16 C -0.159 4.159 17 C -0.182 4.182 18 O -0.358 6.358 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.174 1.174 23 C -0.069 4.069 24 C -0.177 4.177 25 O -0.070 6.070 26 C -0.070 4.070 27 C -0.229 4.229 28 C -0.374 4.374 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.238 0.762 45 H 0.167 0.833 46 H 0.156 0.844 47 H 0.273 0.727 48 H 0.216 0.784 49 H 0.101 0.899 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.783 -2.081 5.412 6.432 hybrid contribution 0.283 -0.703 -0.073 0.761 sum -2.501 -2.785 5.339 6.520 Atomic orbital electron populations 1.25986 1.18411 1.05433 1.05428 0.79426 0.66775 0.64976 0.63856 1.26243 1.05713 1.19570 1.05226 1.26667 1.04142 1.08569 1.09516 1.22074 1.03112 1.00089 0.79826 1.48419 1.07542 1.64262 1.12334 1.17463 0.82977 0.76780 0.85822 1.90720 1.86242 1.53403 1.16071 1.21383 0.92673 1.09413 0.99083 1.21947 0.88188 1.00005 0.91424 1.21171 1.03641 0.78327 0.91064 1.86044 1.82587 1.18814 1.36331 1.19212 0.95133 0.91413 0.86694 1.21374 1.06870 1.01458 0.93007 1.21043 0.97717 0.93430 0.98582 1.20386 1.04458 0.93872 0.97185 1.24911 0.88283 1.03098 1.01921 1.86482 1.19008 1.37634 1.92723 0.85288 0.80778 0.77656 0.76003 1.18691 1.19756 1.17420 1.21009 0.94433 1.00687 0.90819 1.20686 1.05409 0.90316 1.01331 1.83782 1.38502 1.58511 1.26208 1.25028 0.90083 0.98988 0.92918 1.23618 0.99204 1.05032 0.95085 1.27943 0.90458 1.07948 1.11026 0.89633 0.90993 0.90181 0.93036 0.91236 0.89620 0.86640 0.88126 0.87978 0.90514 0.88010 0.87795 0.84092 0.84627 0.85717 0.76234 0.83315 0.84427 0.72690 0.78416 0.89896 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 3.18 8.65 113.37 0.98 4.16 16 2 Si 1.06 -6.58 13.70 68.60 0.94 -5.64 16 3 C -0.46 0.79 8.65 113.37 0.98 1.77 16 4 C -0.40 3.23 5.93 72.64 0.43 3.66 16 5 C 0.07 -0.22 5.03 87.16 0.44 0.22 16 6 N -0.59 -2.90 2.84 -624.59 -1.77 -4.67 16 7 C 0.58 6.73 7.70 86.65 0.67 7.40 16 8 O -0.58 -10.91 14.93 -4.07 -0.06 -10.97 16 9 C -0.22 -1.66 6.02 -18.99 -0.11 -1.78 16 10 C 0.04 0.30 7.00 25.26 0.18 0.47 16 11 C 0.13 1.04 4.96 71.24 0.35 1.40 16 12 O -0.32 -3.55 10.12 -92.45 -0.94 -4.48 16 13 C 0.12 1.09 6.69 22.51 0.15 1.24 16 14 C -0.21 -1.34 9.04 22.37 0.20 -1.14 16 15 C -0.09 -0.39 8.66 22.26 0.19 -0.20 16 16 C -0.16 -0.56 5.35 -19.85 -0.11 -0.67 16 17 C -0.07 -0.05 2.80 71.23 0.20 0.15 16 18 O -0.55 -0.84 12.83 -148.98 -1.91 -2.75 16 19 Si 0.98 0.58 25.14 68.60 1.72 2.30 16 20 H -0.26 -0.68 7.11 99.48 0.71 0.03 16 21 H -0.27 -0.98 7.11 99.48 0.71 -0.28 16 22 H -0.25 -0.04 7.04 99.48 0.70 0.66 16 23 C -0.05 -0.22 9.68 22.25 0.22 0.00 16 24 C -0.16 -1.09 9.99 22.36 0.22 -0.86 16 25 O -0.17 -0.74 10.52 4.57 0.05 -0.69 16 26 C 0.00 0.01 12.03 66.89 0.80 0.82 16 27 C -0.21 0.19 8.92 23.65 0.21 0.40 16 28 C -0.21 -0.53 6.04 127.23 0.77 0.24 16 29 H 0.08 -0.72 7.96 -2.39 -0.02 -0.74 16 30 H 0.07 -0.44 7.96 -2.39 -0.02 -0.45 16 31 H 0.08 -0.61 7.96 -2.39 -0.02 -0.63 16 32 H 0.05 0.14 7.96 -2.39 -0.02 0.12 16 33 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 34 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 35 H 0.12 -1.32 8.05 -2.39 -0.02 -1.34 16 36 H 0.10 -0.93 8.05 -2.39 -0.02 -0.95 16 37 H 0.10 -0.43 4.05 -2.39 -0.01 -0.44 16 38 H 0.08 -0.42 8.10 -2.39 -0.02 -0.44 16 39 H 0.10 0.30 7.65 -2.39 -0.02 0.28 16 40 H 0.10 1.07 5.85 -2.39 -0.01 1.06 16 41 H 0.14 0.48 6.30 -2.91 -0.02 0.46 16 42 H 0.14 0.14 4.86 -2.91 -0.01 0.13 16 43 H 0.13 -0.13 7.96 -2.39 -0.02 -0.15 16 44 H 0.39 -1.83 8.70 -74.05 -0.64 -2.47 16 45 H 0.15 0.13 8.06 -2.91 -0.02 0.11 16 46 H 0.14 0.68 8.06 -2.91 -0.02 0.65 16 47 H 0.26 -3.32 8.06 -2.91 -0.02 -3.34 16 48 H 0.20 -1.42 5.67 -2.91 -0.02 -1.43 16 49 H 0.08 0.07 8.06 -2.39 -0.02 0.05 16 50 H 0.07 0.51 7.63 -2.39 -0.02 0.49 16 Total: 0.00 -24.61 407.37 5.89 -18.72 By element: Atomic # 1 Polarization: -10.16 SS G_CDS: 1.08 Total: -9.08 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.78 Total: 17.28 kcal Atomic # 7 Polarization: -2.90 SS G_CDS: -1.77 Total: -4.67 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -2.86 Total: -18.90 kcal Atomic # 14 Polarization: -6.00 SS G_CDS: 2.66 Total: -3.34 kcal Total: -24.61 5.89 -18.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_4549634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.819 kcal (2) G-P(sol) polarization free energy of solvation -24.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds