Wall clock time and date at job start Sun Mar 7 2021 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99491 * 2 1 4 4 C 1.38668 * 120.00376 * 0.02562 * 3 2 1 5 5 C 1.38150 * 120.00300 * 179.97438 * 4 3 2 6 6 C 1.38684 * 119.99625 * 359.76270 * 5 4 3 7 7 O 1.35983 * 119.99982 * 180.23434 * 6 5 4 8 8 C 1.42898 * 117.00200 * 0.25700 * 7 6 5 9 9 C 1.50702 * 109.47275 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99909 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99746 * 180.02562 * 9 8 7 12 12 C 1.45024 * 120.86388 * 0.02562 * 11 9 8 13 13 C 1.55213 * 116.00997 * 180.84795 * 12 11 9 14 14 Si 1.90179 * 98.86254 * 20.24611 * 13 12 11 15 15 C 1.86305 * 111.96727 * 88.86504 * 14 13 12 16 16 C 1.86304 * 111.97153 * 215.20948 * 14 13 12 17 17 C 1.48281 * 120.85788 * 179.74819 * 11 9 8 18 18 C 1.38714 * 119.99906 * 0.49188 * 6 5 4 19 19 C 1.50701 * 119.99918 * 179.76442 * 18 6 5 20 20 O 1.42895 * 109.47079 * 74.72758 * 19 18 6 21 21 Si 1.86301 * 109.47149 * 194.72253 * 19 18 6 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.38113 * 120.00245 * 359.48904 * 18 6 5 26 26 H 1.08994 * 109.47337 * 300.00012 * 1 2 3 27 27 H 1.09008 * 109.47339 * 59.99883 * 1 2 3 28 28 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.99948 * 0.02562 * 4 3 2 30 30 H 1.07996 * 120.00569 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47320 * 299.99711 * 8 7 6 32 32 H 1.08995 * 109.47202 * 59.99354 * 8 7 6 33 33 H 1.08999 * 108.15094 * 302.50388 * 12 11 9 34 34 H 1.08996 * 108.15044 * 59.22953 * 12 11 9 35 35 H 1.08995 * 111.51248 * 137.66722 * 13 12 11 36 36 H 1.09006 * 111.51191 * 262.78202 * 13 12 11 37 37 H 1.08996 * 109.47411 * 59.99941 * 15 14 13 38 38 H 1.09002 * 109.47137 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47266 * 299.99362 * 15 14 13 40 40 H 1.09002 * 109.46349 * 60.00679 * 16 14 13 41 41 H 1.08995 * 109.46950 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47217 * 300.00919 * 16 14 13 43 43 H 1.08997 * 111.29849 * 276.18936 * 17 11 9 44 44 H 1.09005 * 111.29931 * 40.80419 * 17 11 9 45 45 H 1.09001 * 109.47380 * 314.72155 * 19 18 6 46 46 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 47 47 H 1.07999 * 120.00114 * 180.25118 * 25 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2910 2.3747 0.0005 5 6 1.9181 3.6056 0.0011 6 6 3.3030 3.6782 0.0060 7 8 3.9203 4.8899 0.0114 8 6 3.0804 6.0459 0.0173 9 6 3.9346 7.2875 0.0220 10 8 5.1436 7.1917 0.0209 11 7 3.3549 8.5042 0.0284 12 6 1.9111 8.6404 0.0314 13 6 1.3644 10.0930 0.0182 14 14 2.9092 10.9814 -0.6459 15 6 2.9274 11.0499 -2.5076 16 6 3.1189 12.6722 0.1077 17 6 4.1769 9.7382 0.0387 18 6 4.0585 2.5149 0.0002 19 6 5.5635 2.5938 0.0002 20 8 6.0208 2.9668 1.3016 21 14 6.2725 0.9321 -0.4545 22 1 5.7972 0.5443 -1.8069 23 1 5.8300 -0.0826 0.5354 24 1 7.7555 1.0096 -0.4539 25 6 3.4316 1.2843 0.0000 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2125 2.3181 0.0014 30 1 1.3299 4.5114 0.0019 31 1 2.4507 6.0421 -0.8724 32 1 2.4516 6.0336 0.9074 33 1 1.5193 8.1221 -0.8437 34 1 1.5248 8.1407 0.9198 35 1 0.5199 10.1960 -0.6631 36 1 1.1074 10.4325 1.0217 37 1 2.0473 11.5877 -2.8600 38 1 3.8268 11.5661 -2.8434 39 1 2.9187 10.0364 -2.9086 40 1 3.2187 12.5781 1.1890 41 1 4.0135 13.1432 -0.2997 42 1 2.2475 13.2843 -0.1249 43 1 4.4848 10.0004 1.0509 44 1 5.0380 9.6459 -0.6232 45 1 5.8883 3.3386 -0.7264 46 1 5.6902 3.8237 1.6041 47 1 4.0198 0.3785 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16915426_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:12:31 Heat of formation + Delta-G solvation = -141.973886 kcal Electronic energy + Delta-G solvation = -27631.340105 eV Core-core repulsion = 23710.957737 eV Total energy + Delta-G solvation = -3920.382367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.151 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80318 -40.88362 -39.81916 -38.02204 -37.12948 -36.76966 -32.76891 -31.42760 -31.22511 -30.04633 -29.38009 -28.73570 -28.13797 -26.80726 -26.46062 -24.03684 -23.39065 -22.33820 -20.36586 -19.53806 -18.81329 -18.21623 -17.89184 -17.78156 -17.44242 -16.80252 -16.64476 -16.43283 -16.12518 -15.58147 -15.46316 -15.17197 -14.99851 -14.62929 -14.37790 -14.25628 -14.16348 -14.06831 -13.93780 -13.77673 -13.64993 -13.55446 -13.49652 -13.38272 -13.29542 -13.02479 -12.76911 -12.59523 -12.27679 -12.06186 -11.60342 -11.48229 -11.25532 -11.18549 -11.05542 -10.86692 -10.83629 -10.71957 -10.03884 -9.63662 -8.78126 0.10619 0.38779 1.08632 1.35242 1.37748 1.47859 1.54161 1.66821 1.69320 1.72358 2.13339 2.14135 2.27929 2.43029 2.59814 3.32891 3.55969 3.57684 3.67276 3.76393 3.77937 3.98077 3.99563 4.10003 4.15183 4.16475 4.18659 4.36554 4.41101 4.49211 4.49983 4.51602 4.52563 4.53180 4.55593 4.57803 4.67979 4.74033 4.86621 4.90048 5.07799 5.15153 5.22043 5.26427 5.31614 5.34027 5.44027 6.08219 6.23822 6.41696 6.78912 7.08311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.103 3.897 4 C -0.165 4.165 5 C -0.166 4.166 6 C 0.103 3.897 7 O -0.290 6.290 8 C 0.042 3.958 9 C 0.516 3.484 10 O -0.510 6.510 11 N -0.599 5.599 12 C 0.098 3.902 13 C -0.400 4.400 14 Si 0.986 3.014 15 C -0.441 4.441 16 C -0.440 4.440 17 C -0.173 4.173 18 C -0.098 4.098 19 C -0.085 4.085 20 O -0.536 6.536 21 Si 1.015 2.985 22 H -0.248 1.248 23 H -0.251 1.251 24 H -0.255 1.255 25 C -0.116 4.116 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.371 0.629 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 4.809 -1.523 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.058 3.942 4 C -0.183 4.183 5 C -0.184 4.184 6 C 0.058 3.942 7 O -0.203 6.203 8 C -0.037 4.037 9 C 0.303 3.697 10 O -0.384 6.384 11 N -0.336 5.336 12 C -0.025 4.025 13 C -0.486 4.486 14 Si 1.182 2.818 15 C -0.550 4.550 16 C -0.550 4.550 17 C -0.340 4.340 18 C -0.099 4.099 19 C -0.193 4.193 20 O -0.341 6.341 21 Si 0.834 3.166 22 H -0.171 1.171 23 H -0.175 1.175 24 H -0.179 1.179 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.099 0.901 46 H 0.219 0.781 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.385 3.234 -1.808 7.382 hybrid contribution -1.335 1.150 0.310 1.788 sum -7.720 4.384 -1.498 9.003 Atomic orbital electron populations 1.23097 0.78085 1.04343 1.01338 1.86113 1.21547 1.26305 1.88936 1.18791 0.91887 0.84541 0.98983 1.21067 1.00282 0.91492 1.05493 1.21020 0.92887 0.98627 1.05901 1.18640 0.90772 0.84625 1.00170 1.86114 1.33966 1.11041 1.89147 1.22560 0.93211 0.84150 1.03761 1.19941 0.88588 0.83777 0.77412 1.90771 1.14049 1.85987 1.47561 1.47933 1.06358 1.05197 1.74124 1.21121 0.79743 0.99293 1.02312 1.26563 1.12808 1.01424 1.07755 0.80584 0.66078 0.66911 0.68230 1.25972 1.05100 1.04974 1.18993 1.25948 1.05263 1.16410 1.07362 1.27123 1.05093 0.95115 1.06702 1.19435 0.96713 0.89925 1.03875 1.25247 0.91371 1.13433 0.89237 1.86663 1.73777 1.42145 1.31557 0.84476 0.79671 0.72804 0.79612 1.17135 1.17475 1.17886 1.20226 0.92018 0.97373 1.03797 0.92560 0.92563 0.87932 0.84722 0.84920 0.88999 0.88938 0.91501 0.91626 0.88353 0.88875 0.90546 0.90607 0.90934 0.90648 0.90651 0.90530 0.90442 0.89132 0.90052 0.78063 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.74 10.50 -19.70 -0.21 -0.94 16 3 C 0.10 0.26 6.69 -39.24 -0.26 0.00 16 4 C -0.16 -0.11 9.03 -39.45 -0.36 -0.47 16 5 C -0.17 -0.08 9.03 -39.45 -0.36 -0.43 16 6 C 0.10 0.25 6.61 -39.24 -0.26 -0.01 16 7 O -0.29 -0.83 8.54 -39.60 -0.34 -1.16 16 8 C 0.04 0.00 4.06 36.01 0.15 0.14 16 9 C 0.52 1.28 7.78 -10.98 -0.09 1.19 16 10 O -0.51 -3.59 16.42 -14.35 -0.24 -3.83 16 11 N -0.60 0.17 3.08 -110.94 -0.34 -0.17 16 12 C 0.10 -0.33 5.17 -3.66 -0.02 -0.35 16 13 C -0.40 1.89 6.06 38.33 0.23 2.12 16 14 Si 0.99 -4.50 13.66 -169.99 -2.32 -6.82 16 15 C -0.44 1.46 8.65 101.05 0.87 2.34 16 16 C -0.44 1.69 8.65 101.05 0.87 2.57 16 17 C -0.17 0.15 5.76 60.83 0.35 0.50 16 18 C -0.10 -0.32 5.28 -104.49 -0.55 -0.87 16 19 C -0.08 -0.28 2.33 36.01 0.08 -0.20 16 20 O -0.54 -2.37 12.65 -35.23 -0.45 -2.82 16 21 Si 1.01 2.54 25.74 -169.99 -4.38 -1.83 16 22 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 23 H -0.25 -0.74 6.73 56.52 0.38 -0.36 16 24 H -0.25 -0.87 7.11 56.52 0.40 -0.46 16 25 C -0.12 -0.37 8.59 -39.45 -0.34 -0.71 16 26 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 27 H 0.06 -0.15 7.66 -51.92 -0.40 -0.54 16 28 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 29 H 0.14 -0.24 6.29 -52.49 -0.33 -0.57 16 30 H 0.13 -0.32 6.29 -52.49 -0.33 -0.65 16 31 H 0.09 -0.23 7.31 -51.93 -0.38 -0.61 16 32 H 0.09 -0.22 7.39 -51.93 -0.38 -0.61 16 33 H 0.07 -0.31 7.73 -51.93 -0.40 -0.71 16 34 H 0.07 -0.27 7.82 -51.93 -0.41 -0.67 16 35 H 0.10 -0.56 8.06 -51.93 -0.42 -0.97 16 36 H 0.09 -0.45 8.06 -51.93 -0.42 -0.87 16 37 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 38 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 39 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 40 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 41 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 42 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 43 H 0.08 -0.06 8.06 -51.93 -0.42 -0.47 16 44 H 0.09 0.04 7.84 -51.93 -0.41 -0.36 16 45 H 0.08 0.25 7.83 -51.93 -0.41 -0.16 16 46 H 0.37 1.10 8.57 45.56 0.39 1.49 16 47 H 0.14 0.37 4.89 -52.49 -0.26 0.11 16 LS Contribution 382.42 15.07 5.76 5.76 Total: 0.00 -8.96 382.42 -7.86 -16.82 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -6.68 Total: -11.78 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 1.32 Total: 6.77 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -0.34 Total: -0.17 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -1.23 Total: -8.75 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -6.70 Total: -8.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -8.96 -7.86 -16.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.149 kcal (2) G-P(sol) polarization free energy of solvation -8.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds