Wall clock time and date at job start Sun Mar 7 2021 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99491 * 2 1 4 4 C 1.38668 * 120.00376 * 0.02562 * 3 2 1 5 5 C 1.38150 * 120.00300 * 179.97438 * 4 3 2 6 6 C 1.38684 * 119.99625 * 359.76270 * 5 4 3 7 7 O 1.35983 * 119.99982 * 180.23434 * 6 5 4 8 8 C 1.42898 * 117.00200 * 0.25700 * 7 6 5 9 9 C 1.50702 * 109.47275 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99909 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99746 * 180.02562 * 9 8 7 12 12 C 1.45024 * 120.86388 * 0.02562 * 11 9 8 13 13 C 1.55213 * 116.00997 * 180.84795 * 12 11 9 14 14 Si 1.90179 * 98.86254 * 20.24611 * 13 12 11 15 15 C 1.86305 * 111.96727 * 88.86504 * 14 13 12 16 16 C 1.86304 * 111.97153 * 215.20948 * 14 13 12 17 17 C 1.48281 * 120.85788 * 179.74819 * 11 9 8 18 18 C 1.38714 * 119.99906 * 0.49188 * 6 5 4 19 19 C 1.50701 * 119.99918 * 179.76442 * 18 6 5 20 20 O 1.42895 * 109.47079 * 74.72758 * 19 18 6 21 21 Si 1.86301 * 109.47149 * 194.72253 * 19 18 6 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.38113 * 120.00245 * 359.48904 * 18 6 5 26 26 H 1.08994 * 109.47337 * 300.00012 * 1 2 3 27 27 H 1.09008 * 109.47339 * 59.99883 * 1 2 3 28 28 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.99948 * 0.02562 * 4 3 2 30 30 H 1.07996 * 120.00569 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47320 * 299.99711 * 8 7 6 32 32 H 1.08995 * 109.47202 * 59.99354 * 8 7 6 33 33 H 1.08999 * 108.15094 * 302.50388 * 12 11 9 34 34 H 1.08996 * 108.15044 * 59.22953 * 12 11 9 35 35 H 1.08995 * 111.51248 * 137.66722 * 13 12 11 36 36 H 1.09006 * 111.51191 * 262.78202 * 13 12 11 37 37 H 1.08996 * 109.47411 * 59.99941 * 15 14 13 38 38 H 1.09002 * 109.47137 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47266 * 299.99362 * 15 14 13 40 40 H 1.09002 * 109.46349 * 60.00679 * 16 14 13 41 41 H 1.08995 * 109.46950 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47217 * 300.00919 * 16 14 13 43 43 H 1.08997 * 111.29849 * 276.18936 * 17 11 9 44 44 H 1.09005 * 111.29931 * 40.80419 * 17 11 9 45 45 H 1.09001 * 109.47380 * 314.72155 * 19 18 6 46 46 H 0.96708 * 113.99763 * 299.99687 * 20 19 18 47 47 H 1.07999 * 120.00114 * 180.25118 * 25 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2910 2.3747 0.0005 5 6 1.9181 3.6056 0.0011 6 6 3.3030 3.6782 0.0060 7 8 3.9203 4.8899 0.0114 8 6 3.0804 6.0459 0.0173 9 6 3.9346 7.2875 0.0220 10 8 5.1436 7.1917 0.0209 11 7 3.3549 8.5042 0.0284 12 6 1.9111 8.6404 0.0314 13 6 1.3644 10.0930 0.0182 14 14 2.9092 10.9814 -0.6459 15 6 2.9274 11.0499 -2.5076 16 6 3.1189 12.6722 0.1077 17 6 4.1769 9.7382 0.0387 18 6 4.0585 2.5149 0.0002 19 6 5.5635 2.5938 0.0002 20 8 6.0208 2.9668 1.3016 21 14 6.2725 0.9321 -0.4545 22 1 5.7972 0.5443 -1.8069 23 1 5.8300 -0.0826 0.5354 24 1 7.7555 1.0096 -0.4539 25 6 3.4316 1.2843 0.0000 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2125 2.3181 0.0014 30 1 1.3299 4.5114 0.0019 31 1 2.4507 6.0421 -0.8724 32 1 2.4516 6.0336 0.9074 33 1 1.5193 8.1221 -0.8437 34 1 1.5248 8.1407 0.9198 35 1 0.5199 10.1960 -0.6631 36 1 1.1074 10.4325 1.0217 37 1 2.0473 11.5877 -2.8600 38 1 3.8268 11.5661 -2.8434 39 1 2.9187 10.0364 -2.9086 40 1 3.2187 12.5781 1.1890 41 1 4.0135 13.1432 -0.2997 42 1 2.2475 13.2843 -0.1249 43 1 4.4848 10.0004 1.0509 44 1 5.0380 9.6459 -0.6232 45 1 5.8883 3.3386 -0.7264 46 1 5.6902 3.8237 1.6041 47 1 4.0198 0.3785 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:12:30 Heat of formation + Delta-G solvation = -138.788641 kcal Electronic energy + Delta-G solvation = -27631.201982 eV Core-core repulsion = 23710.957737 eV Total energy + Delta-G solvation = -3920.244245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.151 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87417 -40.95237 -39.87805 -38.18235 -37.18985 -36.92379 -32.86867 -31.34475 -31.09409 -30.04845 -29.09730 -28.43013 -28.06556 -26.74388 -26.59887 -23.93625 -23.34570 -22.42598 -20.33329 -19.61204 -18.88003 -18.28183 -18.04029 -17.77055 -17.55794 -16.81515 -16.66354 -16.36255 -16.22737 -15.66306 -15.57846 -15.24139 -14.92630 -14.66639 -14.32705 -14.18910 -14.12682 -13.89672 -13.74445 -13.63137 -13.57955 -13.44532 -13.31515 -13.17123 -13.08542 -12.99959 -12.57240 -12.40559 -12.30472 -12.27163 -11.84261 -11.47723 -11.30698 -11.15034 -11.12899 -10.88453 -10.77145 -10.49443 -10.13848 -9.59397 -8.86027 0.02145 0.29410 1.13100 1.33372 1.39332 1.43684 1.47673 1.49273 1.87314 1.89175 1.97473 2.29368 2.37497 2.50148 2.52304 3.34777 3.51104 3.67929 3.84085 3.86644 3.87672 3.97232 4.05675 4.10112 4.19409 4.30137 4.31164 4.40787 4.41160 4.59263 4.65457 4.75016 4.75227 4.77148 4.79976 4.83958 4.85268 4.94457 4.96277 5.08929 5.15331 5.16270 5.22038 5.37857 5.51593 5.57508 5.64503 6.07140 6.25818 6.40577 6.51965 7.01665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.090 3.910 4 C -0.159 4.159 5 C -0.158 4.158 6 C 0.093 3.907 7 O -0.314 6.314 8 C 0.040 3.960 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.594 5.594 12 C 0.081 3.919 13 C -0.393 4.393 14 Si 1.070 2.930 15 C -0.457 4.457 16 C -0.453 4.453 17 C -0.210 4.210 18 C -0.116 4.116 19 C -0.091 4.091 20 O -0.550 6.550 21 Si 1.037 2.963 22 H -0.238 1.238 23 H -0.259 1.259 24 H -0.271 1.271 25 C -0.136 4.136 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.374 0.626 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 5.787 -1.766 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.045 3.955 4 C -0.177 4.177 5 C -0.176 4.176 6 C 0.048 3.952 7 O -0.228 6.228 8 C -0.038 4.038 9 C 0.292 3.708 10 O -0.454 6.454 11 N -0.328 5.328 12 C -0.040 4.040 13 C -0.480 4.480 14 Si 1.260 2.740 15 C -0.564 4.564 16 C -0.561 4.561 17 C -0.373 4.373 18 C -0.117 4.117 19 C -0.198 4.198 20 O -0.356 6.356 21 Si 0.858 3.142 22 H -0.161 1.161 23 H -0.184 1.184 24 H -0.196 1.196 25 C -0.155 4.155 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.181 0.819 30 H 0.186 0.814 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.223 0.777 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.107 4.223 -2.053 11.145 hybrid contribution -0.192 0.900 0.396 1.001 sum -10.299 5.123 -1.657 11.622 Atomic orbital electron populations 1.23369 0.76207 1.05613 1.02528 1.86083 1.23612 1.26530 1.88998 1.18965 0.91821 0.85437 0.99278 1.21404 1.01619 0.90728 1.03978 1.21391 0.92082 0.99985 1.04141 1.18764 0.91710 0.84179 1.00509 1.86095 1.35493 1.11826 1.89339 1.22794 0.92632 0.81937 1.06393 1.20582 0.88209 0.85377 0.76636 1.90734 1.16731 1.87013 1.50907 1.48154 1.07990 1.04462 1.72214 1.21479 0.77482 1.00934 1.04097 1.26580 1.12769 0.99875 1.08732 0.79367 0.63994 0.64550 0.66129 1.26165 1.05283 1.04526 1.20467 1.26092 1.05445 1.17232 1.07380 1.27719 1.06357 0.97086 1.06121 1.19426 0.96407 0.90685 1.05216 1.25348 0.92325 1.13613 0.88518 1.86627 1.74205 1.42439 1.32331 0.84185 0.78192 0.72090 0.79783 1.16077 1.18373 1.19584 1.20285 0.92894 0.97205 1.05092 0.91381 0.91214 0.86825 0.81863 0.81410 0.85998 0.86107 0.89348 0.90158 0.86242 0.88051 0.89423 0.91375 0.91733 0.90802 0.91217 0.89615 0.91406 0.91718 0.90565 0.77737 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.34 -1.54 10.50 -93.40 -0.98 -2.52 16 3 C 0.09 0.45 6.69 22.49 0.15 0.60 16 4 C -0.16 0.08 9.03 22.35 0.20 0.29 16 5 C -0.16 0.17 9.03 22.36 0.20 0.37 16 6 C 0.09 0.47 6.61 22.49 0.15 0.61 16 7 O -0.31 -2.04 8.54 -74.32 -0.64 -2.67 16 8 C 0.04 -0.04 4.06 71.24 0.29 0.25 16 9 C 0.50 3.11 7.78 87.66 0.68 3.79 16 10 O -0.57 -10.07 16.42 16.00 0.26 -9.80 16 11 N -0.59 0.17 3.08 -623.31 -1.92 -1.74 16 12 C 0.08 -0.73 5.17 87.41 0.45 -0.28 16 13 C -0.39 4.88 6.06 72.74 0.44 5.32 16 14 Si 1.07 -10.58 13.66 68.60 0.94 -9.64 16 15 C -0.46 3.28 8.65 113.37 0.98 4.26 16 16 C -0.45 3.80 8.65 113.37 0.98 4.78 16 17 C -0.21 -0.01 5.76 127.42 0.73 0.73 16 18 C -0.12 -0.93 5.28 -19.78 -0.10 -1.03 16 19 C -0.09 -0.82 2.33 71.24 0.17 -0.66 16 20 O -0.55 -6.36 12.65 -148.98 -1.89 -8.24 16 21 Si 1.04 7.35 25.74 68.60 1.77 9.11 16 22 H -0.24 -1.21 7.11 99.48 0.71 -0.50 16 23 H -0.26 -2.10 6.73 99.48 0.67 -1.43 16 24 H -0.27 -2.49 7.11 99.48 0.71 -1.78 16 25 C -0.14 -1.05 8.59 22.36 0.19 -0.86 16 26 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 27 H 0.07 -0.50 7.66 -2.38 -0.02 -0.52 16 28 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.16 -1.12 6.29 -2.91 -0.02 -1.14 16 30 H 0.17 -1.50 6.29 -2.91 -0.02 -1.51 16 31 H 0.12 -0.92 7.31 -2.39 -0.02 -0.94 16 32 H 0.12 -0.86 7.39 -2.39 -0.02 -0.88 16 33 H 0.09 -1.13 7.73 -2.39 -0.02 -1.15 16 34 H 0.08 -0.90 7.82 -2.39 -0.02 -0.92 16 35 H 0.12 -1.87 8.06 -2.39 -0.02 -1.89 16 36 H 0.10 -1.33 8.06 -2.38 -0.02 -1.35 16 37 H 0.09 -0.80 7.96 -2.39 -0.02 -0.82 16 38 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 39 H 0.06 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.07 -0.57 7.96 -2.39 -0.02 -0.59 16 41 H 0.07 -0.49 7.96 -2.39 -0.02 -0.50 16 42 H 0.08 -0.84 7.96 -2.39 -0.02 -0.85 16 43 H 0.07 0.07 8.06 -2.39 -0.02 0.06 16 44 H 0.06 0.30 7.84 -2.38 -0.02 0.28 16 45 H 0.08 0.70 7.83 -2.39 -0.02 0.68 16 46 H 0.37 3.36 8.57 -74.05 -0.63 2.73 16 47 H 0.14 1.00 4.89 -2.91 -0.01 0.98 16 Total: 0.00 -25.65 382.42 5.24 -20.41 By element: Atomic # 1 Polarization: -15.16 SS G_CDS: 1.06 Total: -14.10 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.63 Total: 19.21 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -1.92 Total: -1.74 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -3.24 Total: -23.24 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.70 Total: -0.53 kcal Total: -25.65 5.24 -20.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.378 kcal (2) G-P(sol) polarization free energy of solvation -25.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds