Wall clock time and date at job start Sun Mar 7 2021 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86301 * 111.60599 * 2 1 4 4 C 1.90268 * 111.84758 * 233.83518 * 2 1 3 5 5 C 1.56385 * 97.25693 * 213.45166 * 4 2 1 6 6 N 1.45785 * 112.11144 * 38.38166 * 5 4 2 7 7 C 1.34784 * 121.16980 * 147.15111 * 6 5 4 8 8 O 1.21283 * 119.99649 * 179.71743 * 7 6 5 9 9 C 1.50697 * 119.99774 * 359.44640 * 7 6 5 10 10 N 1.46507 * 109.47005 * 180.02562 * 9 7 6 11 11 C 1.36834 * 125.05713 * 264.70019 * 10 9 7 12 12 C 1.34242 * 109.93429 * 179.81308 * 11 10 9 13 13 C 1.50701 * 126.49780 * 180.12812 * 12 11 10 14 14 O 1.42900 * 109.46699 * 105.35426 * 13 12 11 15 15 Si 1.86299 * 109.47156 * 345.35708 * 13 12 11 16 16 H 1.48494 * 109.47308 * 60.00061 * 15 13 12 17 17 H 1.48504 * 109.46910 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46848 * 299.99574 * 15 13 12 19 19 C 1.46489 * 106.99661 * 0.42907 * 12 11 10 20 20 C 1.39591 * 134.02945 * 179.76694 * 19 12 11 21 21 C 1.36663 * 119.75902 * 180.02562 * 20 19 12 22 22 C 1.38785 * 120.53424 * 359.95325 * 21 20 19 23 23 C 1.37795 * 120.66468 * 0.02562 * 22 21 20 24 24 C 1.37685 * 125.06607 * 84.99233 * 10 9 7 25 25 C 1.47937 * 117.65776 * 326.87949 * 6 5 4 26 26 H 1.09004 * 109.47197 * 293.84092 * 1 2 3 27 27 H 1.09004 * 109.46997 * 53.83489 * 1 2 3 28 28 H 1.09003 * 109.47125 * 173.83713 * 1 2 3 29 29 H 1.08998 * 109.46948 * 186.16212 * 3 2 1 30 30 H 1.08997 * 109.47029 * 306.16132 * 3 2 1 31 31 H 1.09003 * 109.46721 * 66.16583 * 3 2 1 32 32 H 1.09002 * 111.80386 * 330.65892 * 4 2 1 33 33 H 1.09004 * 111.79871 * 96.50746 * 4 2 1 34 34 H 1.09007 * 109.11979 * 277.62107 * 5 4 2 35 35 H 1.09003 * 108.91498 * 159.00062 * 5 4 2 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 38 38 H 1.07996 * 125.03614 * 359.96975 * 11 10 9 39 39 H 1.09001 * 109.46998 * 225.34956 * 13 12 11 40 40 H 0.96692 * 114.00502 * 300.00093 * 14 13 12 41 41 H 1.07999 * 120.12446 * 359.97438 * 20 19 12 42 42 H 1.08006 * 119.73561 * 179.97438 * 21 20 19 43 43 H 1.07995 * 119.67315 * 180.02562 * 22 21 20 44 44 H 1.07993 * 120.11595 * 179.97438 * 23 22 21 45 45 H 1.09001 * 110.97620 * 125.41421 * 25 6 5 46 46 H 1.08996 * 110.97820 * 249.15969 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5490 1.7321 0.0000 4 6 2.5710 -1.0422 -1.4258 5 6 3.8459 -1.5565 -0.6803 6 7 3.5770 -1.8631 0.7193 7 6 4.2279 -2.8588 1.3529 8 8 3.9911 -3.0923 2.5193 9 6 5.2455 -3.6860 0.6104 10 7 5.8066 -4.6950 1.5123 11 6 6.9689 -4.5564 2.2210 12 6 7.1939 -5.6599 2.9515 13 6 8.3637 -5.9039 3.8698 14 8 7.9358 -5.7854 5.2280 15 14 9.6955 -4.6473 3.5263 16 1 9.1598 -3.2821 3.7592 17 1 10.8479 -4.8874 4.4315 18 1 10.1400 -4.7705 2.1148 19 6 6.0904 -6.5847 2.6813 20 6 5.7686 -7.8678 3.1270 21 6 4.6339 -8.4790 2.6726 22 6 3.7979 -7.8340 1.7721 23 6 4.0962 -6.5671 1.3195 24 6 5.2461 -5.9262 1.7686 25 6 2.5688 -1.0389 1.4214 26 1 -0.3634 0.4154 0.9400 27 1 -0.3633 0.6065 -0.8297 28 1 -0.3633 -1.0218 -0.1103 29 1 3.6327 1.6937 -0.1103 30 1 2.1190 2.2932 -0.8297 31 1 2.2966 2.2228 0.9401 32 1 1.9029 -1.8580 -1.7015 33 1 2.8281 -0.4268 -2.2880 34 1 4.6223 -0.7930 -0.7322 35 1 4.2061 -2.4576 -1.1767 36 1 4.7653 -4.1807 -0.2339 37 1 6.0438 -3.0392 0.2464 38 1 7.6091 -3.6869 2.1981 39 1 8.7568 -6.9061 3.6988 40 1 7.5735 -4.9173 5.4520 41 1 6.4145 -8.3760 3.8277 42 1 4.3855 -9.4720 3.0174 43 1 2.9045 -8.3298 1.4224 44 1 3.4396 -6.0736 0.6184 45 1 1.7963 -1.6644 1.8687 46 1 3.0384 -0.4047 2.1733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16915426_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:19:46 Heat of formation + Delta-G solvation = -26.486185 kcal Electronic energy + Delta-G solvation = -26501.658278 eV Core-core repulsion = 22901.770026 eV Total energy + Delta-G solvation = -3599.888253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.58522 -40.76459 -38.13910 -37.68981 -37.12125 -34.12931 -31.61610 -31.03067 -30.28386 -29.63242 -29.08150 -28.44235 -27.16282 -25.42049 -23.88224 -23.60489 -22.59745 -20.86231 -20.26707 -18.64145 -18.43774 -17.87077 -17.32028 -16.96849 -16.67679 -16.42588 -16.04235 -15.61330 -15.29860 -15.13525 -14.80812 -14.73015 -14.55254 -14.34941 -14.32091 -13.92204 -13.85733 -13.69842 -13.52727 -13.36940 -13.26354 -13.11368 -13.01594 -12.73033 -12.61926 -12.53877 -12.35871 -12.16510 -11.93263 -11.70620 -11.31549 -10.89770 -10.84714 -10.54643 -10.42072 -10.29893 -9.75785 -9.19585 -8.66380 0.10589 0.61308 1.20119 1.30849 1.37851 1.44934 1.47561 1.56285 1.65429 1.81375 1.93042 1.94544 2.08264 2.43182 2.92142 3.38811 3.58034 3.58813 3.69140 3.76746 3.87308 3.97590 4.02911 4.19286 4.25697 4.31524 4.48664 4.57544 4.58372 4.66874 4.69540 4.75571 4.76189 4.77995 4.78828 4.82467 4.87555 4.91533 5.06677 5.11455 5.30796 5.46023 5.48267 5.55460 5.62293 5.63983 5.71555 5.72533 6.09494 6.18953 6.29194 6.72544 6.99336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.069 2.931 3 C -0.451 4.451 4 C -0.399 4.399 5 C 0.079 3.921 6 N -0.593 5.593 7 C 0.483 3.517 8 O -0.578 6.578 9 C 0.088 3.912 10 N -0.469 5.469 11 C 0.059 3.941 12 C -0.215 4.215 13 C -0.053 4.053 14 O -0.560 6.560 15 Si 0.993 3.007 16 H -0.250 1.250 17 H -0.270 1.270 18 H -0.248 1.248 19 C -0.115 4.115 20 C -0.084 4.084 21 C -0.153 4.153 22 C -0.105 4.105 23 C -0.138 4.138 24 C 0.089 3.911 25 C -0.208 4.208 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.141 0.859 37 H 0.158 0.842 38 H 0.190 0.810 39 H 0.112 0.888 40 H 0.383 0.617 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.128 0.872 45 H 0.056 0.944 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 6.093 -9.346 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.259 2.741 3 C -0.559 4.559 4 C -0.486 4.486 5 C -0.042 4.042 6 N -0.327 5.327 7 C 0.270 3.730 8 O -0.457 6.457 9 C -0.036 4.036 10 N -0.151 5.151 11 C -0.066 4.066 12 C -0.222 4.222 13 C -0.162 4.162 14 O -0.366 6.366 15 Si 0.814 3.186 16 H -0.174 1.174 17 H -0.195 1.195 18 H -0.171 1.171 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.172 4.172 22 C -0.124 4.124 23 C -0.159 4.159 24 C -0.016 4.016 25 C -0.371 4.371 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.159 0.841 37 H 0.175 0.825 38 H 0.207 0.793 39 H 0.130 0.870 40 H 0.232 0.768 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.146 0.854 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.241 6.225 -9.034 10.974 hybrid contribution -0.729 -0.086 0.854 1.126 sum -0.970 6.139 -8.180 10.274 Atomic orbital electron populations 1.26181 1.20634 1.04832 1.05025 0.79345 0.65832 0.65797 0.63094 1.26096 1.07166 1.17543 1.05141 1.26932 1.02058 1.09733 1.09896 1.22084 0.99671 1.03787 0.78678 1.48291 1.39751 1.32133 1.12491 1.21521 0.82906 0.81206 0.87369 1.90759 1.66500 1.69497 1.18930 1.22050 0.98613 0.90995 0.91970 1.43465 1.19710 1.12450 1.39508 1.21985 0.89398 0.99826 0.95423 1.20859 1.00155 0.95396 1.05836 1.24551 0.99437 1.10670 0.81592 1.86454 1.84396 1.39737 1.26012 0.85150 0.76109 0.76921 0.80391 1.17378 1.19512 1.17114 1.19329 0.96624 0.95775 1.00166 1.20498 0.97510 0.93145 0.99075 1.20944 0.95323 1.01342 0.99609 1.21138 1.00096 0.93920 0.97212 1.20235 0.95570 0.96281 1.03801 1.18448 0.96738 0.86534 0.99883 1.27533 0.95835 1.02781 1.10949 0.91425 0.89700 0.91325 0.90598 0.89607 0.91372 0.89087 0.85977 0.88980 0.88338 0.84099 0.82484 0.79282 0.87045 0.76840 0.85673 0.84218 0.83593 0.85429 0.92499 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.20 8.65 113.37 0.98 4.18 16 2 Si 1.07 -10.62 13.58 68.60 0.93 -9.69 16 3 C -0.45 4.06 8.65 113.37 0.98 5.04 16 4 C -0.40 4.80 6.21 73.16 0.45 5.25 16 5 C 0.08 -0.77 5.70 87.69 0.50 -0.27 16 6 N -0.59 0.54 3.23 -619.70 -2.00 -1.46 16 7 C 0.48 2.49 7.78 87.65 0.68 3.17 16 8 O -0.58 -9.83 16.50 -3.04 -0.05 -9.88 16 9 C 0.09 -0.17 5.02 85.63 0.43 0.26 16 10 N -0.47 -2.73 2.27 -519.99 -1.18 -3.91 16 11 C 0.06 0.29 9.89 83.00 0.82 1.11 16 12 C -0.21 -1.72 5.58 -18.62 -0.10 -1.82 16 13 C -0.05 -0.25 3.06 71.24 0.22 -0.03 16 14 O -0.56 -4.21 12.88 -148.98 -1.92 -6.12 16 15 Si 0.99 0.52 26.07 68.60 1.79 2.31 16 16 H -0.25 0.10 7.04 99.48 0.70 0.80 16 17 H -0.27 -0.99 7.11 99.48 0.71 -0.28 16 18 H -0.25 -0.01 7.11 99.48 0.71 0.70 16 19 C -0.11 -1.36 6.35 -20.20 -0.13 -1.49 16 20 C -0.08 -0.88 10.05 22.23 0.22 -0.65 16 21 C -0.15 -1.16 9.97 22.03 0.22 -0.94 16 22 C -0.10 -0.68 10.01 22.30 0.22 -0.46 16 23 C -0.14 -1.10 10.00 22.37 0.22 -0.87 16 24 C 0.09 0.92 6.80 39.03 0.27 1.18 16 25 C -0.21 -0.02 5.54 127.49 0.71 0.68 16 26 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 27 H 0.08 -0.71 7.96 -2.38 -0.02 -0.73 16 28 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.07 -0.69 7.96 -2.39 -0.02 -0.71 16 30 H 0.08 -0.88 7.96 -2.39 -0.02 -0.90 16 31 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.09 -1.02 8.07 -2.39 -0.02 -1.04 16 33 H 0.12 -1.90 8.07 -2.38 -0.02 -1.92 16 34 H 0.09 -1.22 8.14 -2.38 -0.02 -1.24 16 35 H 0.10 -1.31 6.40 -2.39 -0.02 -1.32 16 36 H 0.14 -1.01 7.48 -2.39 -0.02 -1.03 16 37 H 0.16 -1.57 8.10 -2.39 -0.02 -1.59 16 38 H 0.19 -0.31 6.29 -2.91 -0.02 -0.33 16 39 H 0.11 0.44 7.96 -2.39 -0.02 0.42 16 40 H 0.38 0.84 8.70 -74.06 -0.64 0.19 16 41 H 0.13 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.14 0.41 8.06 -2.91 -0.02 0.38 16 43 H 0.15 0.16 8.06 -2.91 -0.02 0.13 16 44 H 0.13 0.47 8.06 -2.91 -0.02 0.45 16 45 H 0.06 0.26 8.04 -2.39 -0.02 0.24 16 46 H 0.06 0.15 8.04 -2.39 -0.02 0.13 16 Total: 0.00 -27.63 380.37 5.34 -22.29 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: 1.08 Total: -7.88 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.70 Total: 14.34 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: -3.18 Total: -5.37 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.97 Total: -16.01 kcal Atomic # 14 Polarization: -10.10 SS G_CDS: 2.72 Total: -7.38 kcal Total: -27.63 5.34 -22.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16915426_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.194 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds