Wall clock time and date at job start Sun Mar 7 2021 10:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47191 * 2 1 4 4 C 1.50694 * 109.46715 * 119.99902 * 2 1 3 5 5 C 1.38588 * 120.32322 * 65.00165 * 4 2 1 6 6 C 1.38631 * 118.48930 * 180.02562 * 5 4 2 7 7 C 1.39270 * 119.05919 * 0.02562 * 6 5 4 8 8 C 1.48176 * 119.72352 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99390 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00256 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00140 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47079 * 179.97438 * 11 10 8 13 13 F 1.39900 * 109.47435 * 59.99721 * 12 11 10 14 14 C 1.53006 * 109.47164 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 14 12 11 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 12 17 17 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 18 18 C 1.53002 * 109.47143 * 179.97438 * 16 15 14 19 19 O 1.42903 * 109.47280 * 294.99993 * 18 16 15 20 20 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 21 21 C 1.52997 * 109.47232 * 299.99599 * 12 11 10 22 22 N 1.32744 * 120.55698 * 0.26458 * 7 6 5 23 23 C 1.31498 * 121.64205 * 359.44269 * 22 7 6 24 24 H 0.96704 * 113.99663 * 300.00351 * 1 2 3 25 25 H 1.09002 * 109.46888 * 239.99838 * 2 1 3 26 26 H 1.48501 * 109.99966 * 178.67898 * 3 2 1 27 27 H 1.48497 * 110.00209 * 299.99926 * 3 2 1 28 28 H 1.08001 * 120.75801 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.47519 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99795 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.47453 * 59.99485 * 11 10 8 32 32 H 1.09000 * 109.46684 * 299.99699 * 11 10 8 33 33 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47050 * 300.00004 * 14 12 11 35 35 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 36 36 H 1.08993 * 109.47839 * 299.99931 * 15 14 12 37 37 H 1.09000 * 109.47173 * 55.00063 * 18 16 15 38 38 H 1.09002 * 109.47125 * 175.00124 * 18 16 15 39 39 H 0.96699 * 113.99746 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47452 * 300.00000 * 20 16 15 41 41 H 1.09000 * 109.47054 * 180.02562 * 20 16 15 42 42 H 1.09002 * 109.47153 * 60.00008 * 21 12 11 43 43 H 1.08996 * 109.46952 * 180.02562 * 21 12 11 44 44 H 1.07994 * 119.55045 * 180.31194 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6878 -2.0634 1.4056 6 6 2.1668 -2.6785 2.5519 7 6 2.8716 -1.9194 3.4828 8 6 3.3897 -2.5618 4.7135 9 8 3.1985 -3.7460 4.9073 10 7 4.0730 -1.8326 5.6178 11 6 4.5857 -2.4678 6.8343 12 6 5.3177 -1.4268 7.6836 13 9 4.4315 -0.4015 8.0308 14 6 5.8526 -2.0901 8.9544 15 6 6.8216 -3.2116 8.5750 16 6 7.9878 -2.6289 7.7742 17 1 8.5094 -1.8872 8.3793 18 6 8.9572 -3.7503 7.3954 19 8 9.5453 -4.2921 8.5798 20 6 7.4529 -1.9656 6.5035 21 6 6.4836 -0.8436 6.8826 22 7 3.0783 -0.6240 3.2796 23 6 2.6400 -0.0167 2.1988 24 1 -0.3933 0.4418 0.7651 25 1 1.7923 -0.5139 -0.8900 26 1 3.5346 1.7702 0.0322 27 1 1.5616 2.4679 -1.2085 28 1 1.1367 -2.6257 0.6663 29 1 1.9951 -3.7313 2.7212 30 1 4.2259 -0.8873 5.4629 31 1 5.2765 -3.2664 6.5638 32 1 3.7551 -2.8836 7.4047 33 1 6.3737 -1.3483 9.5596 34 1 5.0218 -2.5052 9.5249 35 1 7.2024 -3.6845 9.4803 36 1 6.3002 -3.9533 7.9700 37 1 8.4162 -4.5351 6.8667 38 1 9.7404 -3.3513 6.7507 39 1 10.1725 -5.0093 8.4148 40 1 6.9315 -2.7072 5.8984 41 1 8.2838 -1.5508 5.9328 42 1 6.1022 -0.3710 5.9775 43 1 7.0053 -0.1023 7.4878 44 1 2.8316 1.0377 2.0655 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16921692_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:49:31 Heat of formation + Delta-G solvation = -135.996777 kcal Electronic energy + Delta-G solvation = -28052.814798 eV Core-core repulsion = 23885.625407 eV Total energy + Delta-G solvation = -4167.189391 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.74681 -41.89424 -40.62426 -39.78463 -37.99259 -37.52551 -35.64087 -33.90699 -33.03735 -32.46674 -31.92575 -28.80743 -27.23723 -25.71896 -25.07241 -24.18663 -23.65955 -22.10282 -21.78735 -20.45260 -19.24005 -18.69178 -18.29465 -17.93359 -17.66111 -16.97266 -16.85695 -16.59704 -16.39342 -16.16018 -16.02639 -15.85464 -15.69880 -15.48372 -14.91343 -14.80160 -14.56265 -14.40928 -14.31319 -14.25930 -13.92303 -13.63556 -13.55918 -13.37597 -13.11331 -12.67687 -12.66734 -12.31678 -12.19611 -12.17071 -11.63290 -11.43718 -11.34112 -11.19103 -11.10875 -10.91999 -10.71429 -10.66559 -10.37473 -10.10524 -5.19631 -0.60971 0.01856 1.07562 1.47096 1.60260 1.83094 1.91513 2.66571 2.89450 3.05129 3.21333 3.23267 3.29301 3.39746 3.40173 3.50440 3.60737 3.69305 3.71868 3.88317 3.96629 4.09209 4.11359 4.15783 4.26730 4.27302 4.31581 4.36974 4.47369 4.48998 4.50562 4.60888 4.68464 4.80709 4.82939 4.85556 4.91996 4.96017 5.03473 5.04273 5.21534 5.26340 5.32034 5.33852 6.25295 6.35632 6.57349 6.61895 7.07408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.067 4.067 3 Si 0.686 3.314 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.107 4.107 7 C 0.081 3.919 8 C 0.573 3.427 9 O -0.528 6.528 10 N -0.707 5.707 11 C 0.096 3.904 12 C 0.112 3.888 13 F -0.202 7.202 14 C -0.136 4.136 15 C -0.113 4.113 16 C -0.091 4.091 17 H 0.083 0.917 18 C 0.079 3.921 19 O -0.573 6.573 20 C -0.114 4.114 21 C -0.137 4.137 22 N -0.453 5.453 23 C 0.105 3.895 24 H 0.381 0.619 25 H 0.120 0.880 26 H -0.252 1.252 27 H -0.249 1.249 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.414 0.586 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.381 0.619 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 1.882 -0.930 2.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.178 4.178 3 Si 0.587 3.413 4 C -0.152 4.152 5 C -0.078 4.078 6 C -0.128 4.128 7 C -0.057 4.057 8 C 0.358 3.642 9 O -0.404 6.404 10 N -0.360 5.360 11 C -0.028 4.028 12 C 0.094 3.906 13 F -0.183 7.183 14 C -0.174 4.174 15 C -0.151 4.151 16 C -0.109 4.109 17 H 0.101 0.899 18 C 0.001 3.999 19 O -0.379 6.379 20 C -0.152 4.152 21 C -0.175 4.175 22 N -0.164 5.164 23 C -0.054 4.054 24 H 0.229 0.771 25 H 0.138 0.862 26 H -0.177 1.177 27 H -0.173 1.173 28 H 0.165 0.835 29 H 0.171 0.829 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.229 0.771 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.265 2.240 -0.794 3.283 hybrid contribution -0.040 -0.940 -1.182 1.511 sum 2.225 1.300 -1.977 3.248 Atomic orbital electron populations 1.86544 1.16548 1.81669 1.49346 1.25047 0.85620 1.10437 0.96710 0.94790 0.81264 0.77286 0.87994 1.21664 0.99419 0.95859 0.98299 1.21565 0.95800 0.93751 0.96732 1.22224 0.95292 1.02320 0.92949 1.21111 0.98665 0.90247 0.95670 1.17828 0.78169 0.85907 0.82289 1.90825 1.57769 1.14789 1.76971 1.45722 1.55538 1.14252 1.20451 1.22139 0.99414 0.95733 0.85541 1.21167 0.88150 0.85391 0.95936 1.92901 1.70530 1.61353 1.93469 1.22084 1.00411 0.99296 0.95604 1.21590 0.95084 0.97049 1.01363 1.21209 0.95646 0.97100 0.96966 0.89901 1.22205 0.95301 0.95487 0.86911 1.86463 1.63017 1.55946 1.32429 1.21551 0.98990 0.97531 0.97122 1.22094 0.95585 0.99002 1.00847 1.67511 1.18173 1.09439 1.21239 1.22602 0.94286 0.99742 0.88809 0.77102 0.86246 1.17698 1.17319 0.83451 0.82939 0.74870 0.88760 0.89898 0.89829 0.90070 0.89929 0.91326 0.93515 0.93512 0.77149 0.91062 0.90640 0.90310 0.89848 0.81885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.75 12.84 -35.23 -0.45 0.29 16 2 C -0.07 0.14 2.82 36.00 0.10 0.24 16 3 Si 0.69 -1.85 29.83 -169.99 -5.07 -6.92 16 4 C -0.15 0.19 5.36 -104.36 -0.56 -0.37 16 5 C -0.05 0.04 9.83 -39.31 -0.39 -0.35 16 6 C -0.11 -0.08 9.63 -39.05 -0.38 -0.45 16 7 C 0.08 0.14 6.75 -83.01 -0.56 -0.42 16 8 C 0.57 1.66 7.81 -12.18 -0.10 1.57 16 9 O -0.53 -2.95 16.32 5.35 0.09 -2.86 16 10 N -0.71 -0.68 5.18 -61.15 -0.32 -1.00 16 11 C 0.10 0.03 4.18 -4.05 -0.02 0.01 16 12 C 0.11 -0.05 1.07 -90.62 -0.10 -0.15 16 13 F -0.20 -0.38 16.67 2.25 0.04 -0.34 16 14 C -0.14 0.14 5.19 -26.73 -0.14 0.00 16 15 C -0.11 0.12 4.83 -26.73 -0.13 -0.01 16 16 C -0.09 0.12 2.43 -90.62 -0.22 -0.10 16 17 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 18 C 0.08 -0.10 6.43 37.16 0.24 0.14 16 19 O -0.57 0.03 13.20 -35.23 -0.46 -0.44 16 20 C -0.11 0.24 4.93 -26.71 -0.13 0.10 16 21 C -0.14 0.22 5.02 -26.71 -0.13 0.09 16 22 N -0.45 -0.39 9.54 -9.80 -0.09 -0.48 16 23 C 0.11 -0.10 9.84 -17.56 -0.17 -0.27 16 24 H 0.38 -1.95 8.70 45.56 0.40 -1.55 16 25 H 0.12 -0.22 7.96 -51.93 -0.41 -0.64 16 26 H -0.25 0.11 7.11 56.52 0.40 0.51 16 27 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 28 H 0.15 -0.30 8.06 -52.49 -0.42 -0.72 16 29 H 0.15 0.05 7.64 -52.49 -0.40 -0.35 16 30 H 0.41 0.06 6.59 -40.82 -0.27 -0.21 16 31 H 0.09 -0.01 4.81 -51.93 -0.25 -0.26 16 32 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 34 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.08 -0.01 7.82 -51.93 -0.41 -0.41 16 36 H 0.07 -0.08 6.43 -51.93 -0.33 -0.41 16 37 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.05 -0.09 8.14 -51.93 -0.42 -0.52 16 39 H 0.38 -1.49 9.12 45.56 0.42 -1.07 16 40 H 0.07 -0.12 6.43 -51.93 -0.33 -0.45 16 41 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 42 H 0.08 -0.14 6.86 -51.93 -0.36 -0.50 16 43 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 44 H 0.16 -0.57 4.92 -52.49 -0.26 -0.83 16 LS Contribution 354.38 15.07 5.34 5.34 Total: 0.00 -8.24 354.38 -8.82 -17.07 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: -5.21 Total: -10.68 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.68 Total: 0.01 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -0.41 Total: -1.48 kcal Atomic # 8 Polarization: -2.17 SS G_CDS: -0.83 Total: -3.00 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -5.07 Total: -6.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -8.24 -8.82 -17.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16921692_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.931 kcal (2) G-P(sol) polarization free energy of solvation -8.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds