Wall clock time and date at job start Sun Mar 7 2021 10:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47191 * 2 1 4 4 C 1.50694 * 109.46715 * 119.99902 * 2 1 3 5 5 C 1.38588 * 120.32322 * 65.00165 * 4 2 1 6 6 C 1.38631 * 118.48930 * 180.02562 * 5 4 2 7 7 C 1.39270 * 119.05919 * 0.02562 * 6 5 4 8 8 C 1.48176 * 119.72352 * 179.97438 * 7 6 5 9 9 O 1.21515 * 119.99390 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00256 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00140 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47079 * 179.97438 * 11 10 8 13 13 F 1.39900 * 109.47435 * 59.99721 * 12 11 10 14 14 C 1.53006 * 109.47164 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46626 * 59.99702 * 14 12 11 16 16 C 1.52997 * 109.46991 * 60.00378 * 15 14 12 17 17 H 1.09000 * 109.47611 * 59.99933 * 16 15 14 18 18 C 1.53002 * 109.47143 * 179.97438 * 16 15 14 19 19 O 1.42903 * 109.47280 * 294.99993 * 18 16 15 20 20 C 1.52996 * 109.47131 * 299.99311 * 16 15 14 21 21 C 1.52997 * 109.47232 * 299.99599 * 12 11 10 22 22 N 1.32744 * 120.55698 * 0.26458 * 7 6 5 23 23 C 1.31498 * 121.64205 * 359.44269 * 22 7 6 24 24 H 0.96704 * 113.99663 * 300.00351 * 1 2 3 25 25 H 1.09002 * 109.46888 * 239.99838 * 2 1 3 26 26 H 1.48501 * 109.99966 * 178.67898 * 3 2 1 27 27 H 1.48497 * 110.00209 * 299.99926 * 3 2 1 28 28 H 1.08001 * 120.75801 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.47519 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99795 * 359.97438 * 10 8 7 31 31 H 1.09001 * 109.47453 * 59.99485 * 11 10 8 32 32 H 1.09000 * 109.46684 * 299.99699 * 11 10 8 33 33 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47050 * 300.00004 * 14 12 11 35 35 H 1.09002 * 109.46719 * 180.02562 * 15 14 12 36 36 H 1.08993 * 109.47839 * 299.99931 * 15 14 12 37 37 H 1.09000 * 109.47173 * 55.00063 * 18 16 15 38 38 H 1.09002 * 109.47125 * 175.00124 * 18 16 15 39 39 H 0.96699 * 113.99746 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47452 * 300.00000 * 20 16 15 41 41 H 1.09000 * 109.47054 * 180.02562 * 20 16 15 42 42 H 1.09002 * 109.47153 * 60.00008 * 21 12 11 43 43 H 1.08996 * 109.46952 * 180.02562 * 21 12 11 44 44 H 1.07994 * 119.55045 * 180.31194 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6878 -2.0634 1.4056 6 6 2.1668 -2.6785 2.5519 7 6 2.8716 -1.9194 3.4828 8 6 3.3897 -2.5618 4.7135 9 8 3.1985 -3.7460 4.9073 10 7 4.0730 -1.8326 5.6178 11 6 4.5857 -2.4678 6.8343 12 6 5.3177 -1.4268 7.6836 13 9 4.4315 -0.4015 8.0308 14 6 5.8526 -2.0901 8.9544 15 6 6.8216 -3.2116 8.5750 16 6 7.9878 -2.6289 7.7742 17 1 8.5094 -1.8872 8.3793 18 6 8.9572 -3.7503 7.3954 19 8 9.5453 -4.2921 8.5798 20 6 7.4529 -1.9656 6.5035 21 6 6.4836 -0.8436 6.8826 22 7 3.0783 -0.6240 3.2796 23 6 2.6400 -0.0167 2.1988 24 1 -0.3933 0.4418 0.7651 25 1 1.7923 -0.5139 -0.8900 26 1 3.5346 1.7702 0.0322 27 1 1.5616 2.4679 -1.2085 28 1 1.1367 -2.6257 0.6663 29 1 1.9951 -3.7313 2.7212 30 1 4.2259 -0.8873 5.4629 31 1 5.2765 -3.2664 6.5638 32 1 3.7551 -2.8836 7.4047 33 1 6.3737 -1.3483 9.5596 34 1 5.0218 -2.5052 9.5249 35 1 7.2024 -3.6845 9.4803 36 1 6.3002 -3.9533 7.9700 37 1 8.4162 -4.5351 6.8667 38 1 9.7404 -3.3513 6.7507 39 1 10.1725 -5.0093 8.4148 40 1 6.9315 -2.7072 5.8984 41 1 8.2838 -1.5508 5.9328 42 1 6.1022 -0.3710 5.9775 43 1 7.0053 -0.1023 7.4878 44 1 2.8316 1.0377 2.0655 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16921692_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:49:30 Heat of formation + Delta-G solvation = -138.125685 kcal Electronic energy + Delta-G solvation = -28052.907115 eV Core-core repulsion = 23885.625407 eV Total energy + Delta-G solvation = -4167.281707 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.83016 -41.92667 -40.64431 -39.82045 -37.87876 -37.48199 -35.74938 -33.86747 -33.03458 -32.41346 -31.85502 -28.81229 -27.18963 -25.65557 -25.03695 -24.11587 -23.62126 -22.03370 -21.87847 -20.43941 -19.27203 -18.61746 -18.21811 -17.94441 -17.64276 -17.00171 -16.82382 -16.58888 -16.42499 -16.11577 -15.98261 -15.85094 -15.69263 -15.46708 -14.90589 -14.81235 -14.55685 -14.35312 -14.25948 -14.23222 -13.90796 -13.63982 -13.57718 -13.28558 -13.05279 -12.61975 -12.55223 -12.25653 -12.18600 -12.13938 -11.59453 -11.53366 -11.30821 -11.12193 -11.07983 -10.81942 -10.71119 -10.58083 -10.42127 -10.16405 -5.00297 -0.63119 0.05883 1.24674 1.48022 1.63910 1.82727 1.97649 2.63285 2.89263 3.17012 3.23383 3.34121 3.42345 3.45272 3.51100 3.57385 3.64542 3.77147 3.80588 3.92606 4.02303 4.10394 4.21548 4.24892 4.36614 4.37860 4.40235 4.45842 4.49857 4.56553 4.59957 4.69705 4.76942 4.85458 4.92104 4.95369 4.96923 5.04846 5.07452 5.13122 5.15956 5.31388 5.36213 5.41824 6.16091 6.55099 6.70827 6.87927 6.93115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.068 4.068 3 Si 0.771 3.229 4 C -0.142 4.142 5 C -0.053 4.053 6 C -0.114 4.114 7 C 0.063 3.937 8 C 0.570 3.430 9 O -0.563 6.563 10 N -0.698 5.698 11 C 0.096 3.904 12 C 0.115 3.885 13 F -0.215 7.215 14 C -0.133 4.133 15 C -0.109 4.109 16 C -0.090 4.090 17 H 0.077 0.923 18 C 0.076 3.924 19 O -0.594 6.594 20 C -0.108 4.108 21 C -0.135 4.135 22 N -0.461 5.461 23 C 0.103 3.897 24 H 0.397 0.603 25 H 0.120 0.880 26 H -0.278 1.278 27 H -0.296 1.296 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.419 0.581 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.396 0.604 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 2.672 -1.501 3.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.179 4.179 3 Si 0.676 3.324 4 C -0.144 4.144 5 C -0.079 4.079 6 C -0.135 4.135 7 C -0.074 4.074 8 C 0.356 3.644 9 O -0.442 6.442 10 N -0.350 5.350 11 C -0.028 4.028 12 C 0.096 3.904 13 F -0.196 7.196 14 C -0.172 4.172 15 C -0.146 4.146 16 C -0.108 4.108 17 H 0.095 0.905 18 C -0.001 4.001 19 O -0.402 6.402 20 C -0.146 4.146 21 C -0.173 4.173 22 N -0.172 5.172 23 C -0.056 4.056 24 H 0.248 0.752 25 H 0.137 0.863 26 H -0.205 1.205 27 H -0.224 1.224 28 H 0.179 0.821 29 H 0.168 0.832 30 H 0.257 0.743 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.245 0.755 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.458 3.029 -1.330 4.122 hybrid contribution -0.118 -1.152 -1.062 1.572 sum 2.341 1.876 -2.393 3.837 Atomic orbital electron populations 1.86515 1.16655 1.82107 1.50579 1.25155 0.85611 1.10914 0.96222 0.93790 0.78234 0.74693 0.85655 1.21778 0.98670 0.95620 0.98346 1.21745 0.95534 0.94178 0.96410 1.22277 0.95496 1.02312 0.93379 1.21010 0.99848 0.90884 0.95651 1.18075 0.77924 0.85595 0.82807 1.90795 1.59315 1.16193 1.77860 1.45700 1.54719 1.14355 1.20179 1.22162 0.99176 0.96134 0.85299 1.21229 0.88117 0.84873 0.96133 1.92874 1.71130 1.61941 1.93609 1.22062 1.00389 0.99326 0.95379 1.21528 0.95172 0.96927 1.00989 1.21197 0.95443 0.97053 0.97110 0.90495 1.22266 0.95568 0.95572 0.86711 1.86422 1.63664 1.56794 1.33325 1.21502 0.99103 0.97216 0.96751 1.22090 0.95120 0.99201 1.00849 1.67500 1.18612 1.09003 1.22075 1.23018 0.93658 1.00778 0.88189 0.75230 0.86288 1.20484 1.22364 0.82122 0.83240 0.74304 0.88339 0.90978 0.89643 0.90188 0.90904 0.91334 0.93162 0.92615 0.75481 0.91352 0.89605 0.89908 0.89420 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.19 12.84 -148.98 -1.91 0.28 16 2 C -0.07 0.35 2.82 71.23 0.20 0.55 16 3 Si 0.77 -4.82 29.83 68.60 2.05 -2.77 16 4 C -0.14 0.48 5.36 -19.70 -0.11 0.38 16 5 C -0.05 0.09 9.83 22.45 0.22 0.31 16 6 C -0.11 -0.23 9.63 22.61 0.22 -0.01 16 7 C 0.06 0.26 6.75 41.90 0.28 0.55 16 8 C 0.57 4.00 7.81 86.88 0.68 4.68 16 9 O -0.56 -7.28 16.32 -3.76 -0.06 -7.34 16 10 N -0.70 -1.92 5.18 -465.67 -2.41 -4.33 16 11 C 0.10 0.15 4.18 86.38 0.36 0.51 16 12 C 0.11 -0.06 1.07 -10.79 -0.01 -0.07 16 13 F -0.21 -0.89 16.67 44.97 0.75 -0.14 16 14 C -0.13 0.19 5.19 30.60 0.16 0.35 16 15 C -0.11 0.17 4.83 30.59 0.15 0.31 16 16 C -0.09 0.23 2.43 -10.79 -0.03 0.20 16 17 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 18 C 0.08 -0.20 6.43 71.98 0.46 0.26 16 19 O -0.59 -0.02 13.20 -148.98 -1.97 -1.99 16 20 C -0.11 0.48 4.93 30.61 0.15 0.63 16 21 C -0.13 0.46 5.02 30.61 0.15 0.61 16 22 N -0.46 -0.71 9.54 -184.91 -1.76 -2.47 16 23 C 0.10 -0.30 9.84 84.83 0.83 0.54 16 24 H 0.40 -4.64 8.70 -74.05 -0.64 -5.29 16 25 H 0.12 -0.57 7.96 -2.39 -0.02 -0.59 16 26 H -0.28 0.49 7.11 99.48 0.71 1.20 16 27 H -0.30 -0.54 7.11 99.48 0.71 0.16 16 28 H 0.16 -0.76 8.06 -2.91 -0.02 -0.79 16 29 H 0.15 0.31 7.64 -2.91 -0.02 0.29 16 30 H 0.42 0.29 6.59 -92.70 -0.61 -0.32 16 31 H 0.10 0.08 4.81 -2.39 -0.01 0.07 16 32 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.07 0.05 7.82 -2.39 -0.02 0.03 16 36 H 0.07 -0.11 6.43 -2.39 -0.02 -0.12 16 37 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.40 -3.05 9.12 -74.06 -0.68 -3.73 16 40 H 0.07 -0.23 6.43 -2.39 -0.02 -0.25 16 41 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.08 -0.33 6.86 -2.39 -0.02 -0.35 16 43 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.19 -1.61 4.92 -2.91 -0.01 -1.63 16 Total: 0.00 -19.35 354.38 -2.42 -21.77 By element: Atomic # 1 Polarization: -11.96 SS G_CDS: -0.83 Total: -12.79 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 3.73 Total: 9.79 kcal Atomic # 7 Polarization: -2.63 SS G_CDS: -4.18 Total: -6.81 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -3.94 Total: -9.05 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.75 Total: -0.14 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.05 Total: -2.77 kcal Total: -19.35 -2.42 -21.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16921692_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.354 kcal (2) G-P(sol) polarization free energy of solvation -19.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds