Wall clock time and date at job start Sun Mar 7 2021 13:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35656 * 116.99527 * 2 1 4 4 C 1.40143 * 120.14788 * 179.97438 * 3 2 1 5 5 C 1.47536 * 120.19274 * 0.05428 * 4 3 2 6 6 O 1.21591 * 119.99593 * 359.97058 * 5 4 3 7 7 N 1.34773 * 120.00250 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00049 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47363 * 179.97438 * 8 7 5 10 10 H 1.09006 * 112.84798 * 43.79975 * 9 8 7 11 11 C 1.53775 * 113.61880 * 174.99630 * 9 8 7 12 12 C 1.53781 * 87.08053 * 139.98038 * 11 9 8 13 13 H 1.09004 * 113.61198 * 219.93564 * 12 11 9 14 14 N 1.46505 * 113.61480 * 89.11992 * 12 11 9 15 15 C 1.34420 * 126.81965 * 275.00053 * 14 12 11 16 16 N 1.30828 * 108.08006 * 179.97438 * 15 14 12 17 17 C 1.33243 * 109.82705 * 359.97438 * 16 15 14 18 18 N 1.30720 * 108.94707 * 359.75876 * 17 16 15 19 19 C 1.53776 * 87.08171 * 334.56730 * 12 11 9 20 20 C 1.39709 * 119.61686 * 180.02562 * 4 3 2 21 21 C 1.37782 * 119.90703 * 0.26302 * 20 4 3 22 22 C 1.50705 * 119.85069 * 179.74141 * 21 20 4 23 23 O 1.42901 * 109.46650 * 64.99980 * 22 21 20 24 24 Si 1.86301 * 109.47300 * 184.99761 * 22 21 20 25 25 C 1.38548 * 120.30001 * 359.48541 * 21 20 4 26 26 C 1.38053 * 120.39153 * 0.51341 * 25 21 20 27 27 H 1.08992 * 109.47448 * 299.99373 * 1 2 3 28 28 H 1.08998 * 109.47474 * 60.00057 * 1 2 3 29 29 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99664 * 359.97438 * 7 5 4 31 31 H 1.09008 * 109.47086 * 299.99451 * 8 7 5 32 32 H 1.09000 * 109.47809 * 59.99561 * 8 7 5 33 33 H 1.08996 * 113.61950 * 254.53322 * 11 9 8 34 34 H 1.09004 * 113.61498 * 25.43695 * 11 9 8 35 35 H 1.08002 * 125.96542 * 359.92043 * 15 14 12 36 36 H 1.07999 * 125.53191 * 180.02562 * 17 16 15 37 37 H 1.09002 * 113.62068 * 270.88092 * 19 12 11 38 38 H 1.08999 * 113.61314 * 139.98262 * 19 12 11 39 39 H 1.08002 * 120.04298 * 179.97438 * 20 4 3 40 40 H 1.09004 * 109.46997 * 305.00000 * 22 21 20 41 41 H 0.96693 * 114.00552 * 59.99954 * 23 22 21 42 42 H 1.48504 * 109.99614 * 58.68226 * 24 22 21 43 43 H 1.48500 * 109.99858 * 180.02562 * 24 22 21 44 44 H 1.08007 * 119.80253 * 180.23666 * 25 21 20 45 45 H 1.07997 * 119.95901 * 179.76501 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 3.4440 1.2858 0.0005 5 6 4.2550 0.0533 -0.0001 6 8 3.7095 -1.0333 -0.0005 7 7 5.6004 0.1319 -0.0001 8 6 6.4057 -1.0919 -0.0002 9 6 7.8911 -0.7251 -0.0008 10 1 8.1285 0.0804 0.6943 11 6 8.8257 -1.9400 0.1220 12 6 9.7321 -1.2479 -0.9097 13 1 10.1613 -1.9316 -1.6421 14 7 10.7288 -0.3567 -0.3109 15 6 10.5518 0.9281 0.0426 16 7 11.6778 1.3712 0.5400 17 6 12.5924 0.4024 0.5212 18 7 12.0571 -0.6769 0.0139 19 6 8.4739 -0.5181 -1.4087 20 6 4.0666 2.5365 0.0011 21 6 3.3036 3.6837 0.0066 22 6 3.9765 5.0322 0.0130 23 8 4.6987 5.2099 -1.2072 24 14 2.6882 6.3685 0.1724 25 6 1.9205 3.6033 0.0008 26 6 1.2923 2.3740 0.0002 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 6.0356 0.9988 0.0000 31 1 6.1762 -1.6778 0.8899 32 1 6.1761 -1.6779 -0.8901 33 1 9.2828 -2.0417 1.1062 34 1 8.3839 -2.8690 -0.2386 35 1 9.6395 1.4959 -0.0659 36 1 13.6097 0.4928 0.8723 37 1 7.9358 -1.0582 -2.1878 38 1 8.6469 0.5283 -1.6602 39 1 5.1445 2.6039 0.0019 40 1 4.6662 5.0900 0.8552 41 1 4.1469 5.1702 -2.0002 42 1 1.9090 6.1762 1.4219 43 1 3.3391 7.7032 0.1794 44 1 1.3302 4.5078 0.0013 45 1 0.2137 2.3195 -0.0005 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946164_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:21:08 Heat of formation + Delta-G solvation = 56.464782 kcal Electronic energy + Delta-G solvation = -29748.521303 eV Core-core repulsion = 25543.601404 eV Total energy + Delta-G solvation = -4204.919899 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.22520 -41.75567 -40.57837 -39.67869 -39.15708 -37.07043 -35.75439 -33.45669 -32.64203 -32.11747 -31.80125 -29.17497 -28.38369 -26.95228 -26.12283 -25.62453 -24.51878 -23.10598 -22.64939 -22.24402 -21.52130 -20.61276 -19.51334 -18.37119 -18.08190 -17.87620 -17.42603 -16.92077 -16.77413 -16.65679 -16.37560 -16.14336 -16.07247 -15.80450 -15.75663 -15.55448 -15.30077 -14.75116 -14.63922 -14.50678 -14.40511 -13.95866 -13.63991 -13.50915 -13.42786 -13.16685 -13.07880 -12.98445 -12.41447 -12.14149 -12.12647 -12.00257 -11.78816 -11.74244 -11.63971 -11.05702 -10.99265 -10.86649 -10.58142 -10.35903 -10.28442 -10.01492 -9.26972 -4.96607 -0.24175 0.23877 0.60770 1.27544 1.36045 1.67203 1.79951 1.94415 2.02245 2.10167 2.28797 2.70811 3.09849 3.27710 3.42908 3.48969 3.53152 3.62441 3.64747 3.71672 3.79321 3.88477 4.01415 4.11061 4.15926 4.19372 4.31640 4.37040 4.37721 4.42607 4.53414 4.58703 4.67002 4.68110 4.69734 4.73047 4.77932 4.89229 4.91259 4.95460 5.12205 5.14548 5.30148 5.30503 5.40092 5.43045 5.58723 5.89288 6.31391 6.52698 6.84334 7.06688 7.22996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.169 3.831 4 C -0.197 4.197 5 C 0.556 3.444 6 O -0.566 6.566 7 N -0.715 5.715 8 C 0.136 3.864 9 C -0.117 4.117 10 H 0.107 0.893 11 C -0.131 4.131 12 C 0.118 3.882 13 H 0.117 0.883 14 N -0.362 5.362 15 C 0.257 3.743 16 N -0.578 5.578 17 C 0.190 3.810 18 N -0.352 5.352 19 C -0.122 4.122 20 C -0.015 4.015 21 C -0.168 4.168 22 C -0.060 4.060 23 O -0.552 6.552 24 Si 0.764 3.236 25 C -0.042 4.042 26 C -0.213 4.213 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.412 0.588 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.236 0.764 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.154 0.846 40 H 0.114 0.886 41 H 0.396 0.604 42 H -0.287 1.287 43 H -0.303 1.303 44 H 0.157 0.843 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 3.474 -3.592 7.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.121 3.879 4 C -0.200 4.200 5 C 0.344 3.656 6 O -0.446 6.446 7 N -0.368 5.368 8 C 0.012 3.988 9 C -0.135 4.135 10 H 0.125 0.875 11 C -0.170 4.170 12 C 0.015 3.985 13 H 0.134 0.866 14 N -0.153 5.153 15 C -0.039 4.039 16 N -0.306 5.306 17 C -0.113 4.113 18 N -0.179 5.179 19 C -0.160 4.160 20 C -0.034 4.034 21 C -0.169 4.169 22 C -0.171 4.171 23 O -0.360 6.360 24 Si 0.671 3.329 25 C -0.060 4.060 26 C -0.232 4.232 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.250 0.750 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.267 0.733 36 H 0.252 0.748 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.171 0.829 40 H 0.131 0.869 41 H 0.246 0.754 42 H -0.214 1.214 43 H -0.231 1.231 44 H 0.174 0.826 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.340 2.768 -2.724 6.603 hybrid contribution 0.324 -0.127 0.563 0.662 sum -5.016 2.641 -2.161 6.067 Atomic orbital electron populations 1.23436 0.76598 1.05425 1.02829 1.86334 1.23132 1.26439 1.86582 1.19444 0.91471 0.85505 0.91503 1.19423 0.91088 0.94096 1.15437 1.18274 0.82733 0.88534 0.76048 1.90822 1.72597 1.30366 1.50805 1.45757 1.05017 1.10756 1.75305 1.21299 0.88772 0.86507 1.02204 1.22880 0.92482 0.99584 0.98578 0.87505 1.23367 0.95346 0.98978 0.99304 1.22442 0.86497 0.92905 0.96668 0.86552 1.50387 1.08600 1.10497 1.45766 1.26643 0.99724 0.84352 0.93214 1.70598 1.01155 1.33217 1.25597 1.26543 1.01674 0.85745 0.97315 1.78031 0.91554 1.24964 1.23387 1.23542 0.92048 1.03107 0.97281 1.21120 1.00819 0.89054 0.92395 1.20246 0.93819 0.96053 1.06758 1.24977 1.03114 0.98536 0.90460 1.86475 1.38790 1.94970 1.15785 0.93947 0.79070 0.74265 0.85578 1.21270 0.93759 0.97783 0.93141 1.21470 1.01767 0.90973 1.08964 0.91106 0.90626 0.87524 0.75002 0.92531 0.90951 0.91760 0.86133 0.73299 0.74775 0.85569 0.88380 0.82896 0.86911 0.75437 1.21365 1.23113 0.82560 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.23 8.57 -68.79 -0.59 -2.82 16 3 C 0.17 0.62 6.70 22.84 0.15 0.77 16 4 C -0.20 -0.56 5.89 -20.01 -0.12 -0.68 16 5 C 0.56 3.33 7.76 86.70 0.67 4.00 16 6 O -0.57 -8.60 15.16 16.92 0.26 -8.35 16 7 N -0.71 1.82 5.51 -466.27 -2.57 -0.75 16 8 C 0.14 -0.50 5.51 86.38 0.48 -0.03 16 9 C -0.12 1.02 3.35 -10.27 -0.03 0.98 16 10 H 0.11 -1.04 7.03 -2.38 -0.02 -1.06 16 11 C -0.13 0.80 7.44 31.12 0.23 1.03 16 12 C 0.12 -0.60 5.21 45.52 0.24 -0.36 16 13 H 0.12 -0.57 8.14 -2.38 -0.02 -0.58 16 14 N -0.36 -0.36 3.81 -328.93 -1.25 -1.62 16 15 C 0.26 -0.10 10.82 180.36 1.95 1.85 16 16 N -0.58 -3.45 11.19 -204.00 -2.28 -5.73 16 17 C 0.19 1.06 13.03 180.76 2.36 3.41 16 18 N -0.35 -2.55 12.70 -61.24 -0.78 -3.32 16 19 C -0.12 1.30 6.89 31.12 0.21 1.51 16 20 C -0.02 0.05 9.16 22.52 0.21 0.25 16 21 C -0.17 0.79 5.35 -19.90 -0.11 0.69 16 22 C -0.06 0.35 2.79 71.24 0.20 0.55 16 23 O -0.55 3.05 12.83 -148.98 -1.91 1.13 16 24 Si 0.76 -4.51 29.79 68.60 2.04 -2.46 16 25 C -0.04 0.23 8.65 22.30 0.19 0.43 16 26 C -0.21 0.61 9.03 22.34 0.20 0.81 16 27 H 0.07 -0.39 7.66 -2.39 -0.02 -0.40 16 28 H 0.08 -0.47 7.66 -2.39 -0.02 -0.49 16 29 H 0.11 -0.37 8.14 -2.38 -0.02 -0.39 16 30 H 0.41 -3.58 6.50 -92.71 -0.60 -4.18 16 31 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.07 -0.19 7.84 -2.39 -0.02 -0.21 16 33 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.12 -0.99 8.10 -2.38 -0.02 -1.01 16 35 H 0.25 -2.48 6.75 -2.91 -0.02 -2.50 16 36 H 0.24 -0.15 8.06 -2.91 -0.02 -0.18 16 37 H 0.13 -1.54 7.90 -2.39 -0.02 -1.56 16 38 H 0.10 -1.26 7.03 -2.39 -0.02 -1.27 16 39 H 0.15 -1.24 6.40 -2.91 -0.02 -1.26 16 40 H 0.11 -0.60 7.96 -2.38 -0.02 -0.61 16 41 H 0.40 -5.11 8.70 -74.06 -0.64 -5.75 16 42 H -0.29 0.24 7.11 99.48 0.71 0.94 16 43 H -0.30 -0.80 7.11 99.48 0.71 -0.09 16 44 H 0.16 -1.69 4.88 -2.91 -0.01 -1.70 16 45 H 0.16 -1.24 6.30 -2.91 -0.02 -1.26 16 Total: 0.00 -32.04 372.51 0.71 -31.33 By element: Atomic # 1 Polarization: -23.57 SS G_CDS: -0.15 Total: -23.72 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 7.95 Total: 16.30 kcal Atomic # 7 Polarization: -4.54 SS G_CDS: -6.88 Total: -11.42 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -2.24 Total: -10.03 kcal Atomic # 14 Polarization: -4.51 SS G_CDS: 2.04 Total: -2.46 kcal Total: -32.04 0.71 -31.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.795 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds